Prupe.7G004000_v2.0.a1

complex. Subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
435658 .. 439367
3710 bp
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UTR
Exon/CDS
Intron
Prupe.7G004000.3

Sequence Viewer

Length: 375 bp
ATGGAGCCCGAGGTGGTTCATGCAGAGCTGGTGTTGCCAACCCACTTGAGCTTCAAGCGGATTCAAATGTACGAGAAGTACCCAAAAGGCCAATCAAGAGGGAGACACTGGAAACACCTCAAGCAGATCATTCAGGCCGAGAATTACCAGAATTACCCACCCAATGAACCCAATTATGTTAATATAGAGTCGCCGCCCTCTATGCATCCATGCAAGAGAATTTGTGATATAACAGGATACGAGGCACCTTACTATGACCCAAGGACCGGCCTCCGCTATGCCAATGCTGATATCTTCAAGCTCATAAGATCTCTCCCCAATGAATATGTCCAAAGATATCTGGCTCTCAGAAATGCCGCTGTGGTTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

14.63

Weight (kDa)

9.23

Isoelectric Point (pI)

59.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 4 cut(s) 58, 194, 274, 357
AcsI RAATTY 1 cut(s) 219
AfaI GTAC 2 cut(s) 71, 80
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 4 cut(s) 55, 65, 298, 370
AluBI AGCT 3 cut(s) 28, 51, 301
AluI AGCT 3 cut(s) 28, 51, 301
Alw26I GTCTC 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 3 cut(s) 88, 135, 268
ApoI RAATTY 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 9
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 97
BfuI GTATCC 1 cut(s) 230
BglII AGATCT 1 cut(s) 308
BisI GCNGC 2 cut(s) 194, 357
BlsI GCNGC 2 cut(s) 195, 358
Bme18I GGWCC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 6, 246
BmsI GCATC 1 cut(s) 214
BpuEI CTTGAG 2 cut(s) 67, 104
BsaJI CCNNGG 2 cut(s) 9, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 9, 260
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 1 cut(s) 113
BshFI GGCC 3 cut(s) 90, 137, 270
BshNI GGYRCC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 3 cut(s) 90, 137, 270
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 126, 308
BspACI CCGC 4 cut(s) 58, 194, 274, 357
BspANI GGCC 3 cut(s) 90, 137, 270
BspCNI CTCAG 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 6, 246
BspT107I GGYRCC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 9, 260
BssMI GATC 2 cut(s) 126, 308
BssT1I CCWWGG 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 2 cut(s) 129, 311
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 126, 308
BstMWI GCNNNNNNNGC 2 cut(s) 34, 202
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuI GTATCC 1 cut(s) 230
BsuRI GGCC 3 cut(s) 90, 137, 270
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 70, 79
CviAII CATG 2 cut(s) 20, 210
CviJI RGCY 8 cut(s) 7, 28, 51, 90, 137, 270, 301, 344
CviKI_1 RGCY 8 cut(s) 7, 28, 51, 90, 137, 270, 301, 344
CviQI GTAC 2 cut(s) 70, 79
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 128, 310
DpnII GATC 2 cut(s) 126, 308
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 9
Eco32I GATATC 2 cut(s) 292, 338
Eco47I GGWCC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 8
EcoRV GATATC 2 cut(s) 292, 338
EcoT14I CCWWGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 2 cut(s) 23, 213
FatI CATG 2 cut(s) 19, 209
Fnu4HI GCNGC 2 cut(s) 194, 357
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 194, 357
GluI GCNGC 2 cut(s) 194, 357
HaeIII GGCC 3 cut(s) 90, 137, 270
HapII CCGG 1 cut(s) 267
Hin1II CATG 2 cut(s) 23, 213
HinfI GANTC 2 cut(s) 61, 188
HpaII CCGG 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 23, 205, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 202
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 2 cut(s) 23, 213
Kzo9I GATC 2 cut(s) 126, 308
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 14, 94, 119, 161, 219, 280, 326
LweI GCATC 1 cut(s) 214
MalI GATC 2 cut(s) 128, 310
MboI GATC 2 cut(s) 126, 308
MboII GAAGA 1 cut(s) 286
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 142, 151, 172, 219
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 6 cut(s) 4, 92, 128, 208, 235, 281
Mph1103I ATGCAT 1 cut(s) 207
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 34, 202
NdeII GATC 2 cut(s) 126, 308
NlaIII CATG 2 cut(s) 23, 213
NlaIV GGNNCC 2 cut(s) 6, 246
NmeAIII GCCGAG 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 207
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 195, 358
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 6, 246
PspPI GGNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 71, 80
RsaNI GTAC 2 cut(s) 70, 79
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 194, 357
Sau3AI GATC 2 cut(s) 126, 308
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 9
SetI ASST 6 cut(s) 15, 30, 53, 120, 250, 303
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 46, 119
SmoI CTYRAG 2 cut(s) 46, 119
Sse9I AATT 4 cut(s) 142, 151, 172, 219
SsiI CCGC 4 cut(s) 58, 194, 274, 357
StyI CCWWGG 1 cut(s) 260
TasI AATT 4 cut(s) 142, 151, 172, 219
TauI GCSGC 2 cut(s) 196, 359
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 8, 180, 336
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 264
XapI RAATTY 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.