Rroxscaffold_3G00246480

complex. Subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012323
Physical Location & Seq
Forward (+)
39603779 .. 39606564
2786 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00246480.1

Sequence Viewer

Length: 399 bp
ATGGAGCGAGAGGTGATTCAAGCAGAGCTGGTGTTGCCAAACAAGCTCAGCTTCAAGAGGGTTCAGATGAATGAGAAGTACCCAAAAGGCCAACCCAGAGGGAGATGGAAGCACCTCAAACAGATCATTCAGGCTGAGAATTATCACAACTACCCTCCTGATGAACCCAATTTGGGGGATGATAGCGCATATGAATTCCATGTTAATATAGAGTCACCACCCTCTATGCATCCGTGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCTTACTACGATCCAAGAACCAACCTCCGCTACGCCAACGCAGAAATCTTCAAGCAAATAAGATCGCTTCCCAATGAATATGTTCAAAGATATCTGGCTCTGAGGAATGCTGCTGTGGTTTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YL1_C

Protein Analysis

132

Amino Acids

15.58

Weight (kDa)

8.83

Isoelectric Point (pI)

60.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YL1_C PF08265 82 - 110 2.9e-15 YL1 nuclear protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 1 cut(s) 298
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 2 cut(s) 194, 243
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 173, 174
AgsI TTSAA 5 cut(s) 20, 55, 322, 356, 394
AluBI AGCT 3 cut(s) 28, 46, 51
AluI AGCT 3 cut(s) 28, 46, 51
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 194, 243
Asp700I GAANNNNTTC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 25, 207
BanI GGYRCC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 367
BccI CCATC 1 cut(s) 99
BisI GCNGC 1 cut(s) 381
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 174
BseGI GGATG 2 cut(s) 184, 229
BseLI CCNNNNNNNGG 2 cut(s) 173, 174
BseMII CTCAG 3 cut(s) 61, 126, 362
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 173, 174
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 3 cut(s) 123, 280, 332
Bsp1720I GCTNAGC 1 cut(s) 47
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 3 cut(s) 60, 127, 363
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 268
BssMI GATC 3 cut(s) 123, 280, 332
BstDEI CTNAG 3 cut(s) 47, 135, 371
BstF5I GGATG 2 cut(s) 184, 229
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 126, 283, 335
BstMBI GATC 3 cut(s) 123, 280, 332
BstMWI GCNNNNNNNGC 2 cut(s) 34, 43
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 184, 229
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 200
CviJI RGCY 6 cut(s) 28, 46, 51, 90, 134, 368
CviKI_1 RGCY 6 cut(s) 28, 46, 51, 90, 134, 368
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 47, 135, 371
DpnI GATC 3 cut(s) 125, 282, 334
DpnII GATC 3 cut(s) 123, 280, 332
Eco32I GATATC 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 362
EcoT22I ATGCAT 1 cut(s) 231
FaeI CATG 1 cut(s) 203
FaiI YATR 8 cut(s) 190, 192, 201, 209, 227, 254, 264, 351
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 199
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 191, 216
Fsp4HI GCNGC 1 cut(s) 381
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 90
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 2 cut(s) 16, 212
HphI GGTGA 2 cut(s) 25, 207
Hpy188I TCNGA 2 cut(s) 66, 372
Hpy188III TCNNGA 2 cut(s) 55, 158
HpyCH4V TGCA 2 cut(s) 229, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 43
HpyF3I CTNAG 3 cut(s) 47, 135, 371
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 3 cut(s) 123, 280, 332
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 14, 109, 116, 171, 243, 350
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 213
MalI GATC 3 cut(s) 125, 282, 334
MboI GATC 3 cut(s) 123, 280, 332
MboII GAAGA 1 cut(s) 310
MluCI AATT 4 cut(s) 139, 169, 194, 243
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 9 cut(s) 4, 51, 92, 125, 165, 232, 259, 305, 366
Mph1103I ATGCAT 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 34, 43
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 123, 280, 332
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 231
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 270
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 123, 280, 332
SchI GAGTC 1 cut(s) 221
SetI ASST 7 cut(s) 15, 30, 48, 53, 117, 274, 297
SfaNI GCATC 1 cut(s) 238
Sse9I AATT 4 cut(s) 139, 169, 194, 243
SsiI CCGC 1 cut(s) 298
TasI AATT 4 cut(s) 139, 169, 194, 243
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 83, 177, 207, 360
TspGWI ACGGA 1 cut(s) 222
XapI RAATTY 2 cut(s) 194, 243
XmnI GAANNNNTTC 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.