Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014439

Physical Location & Seq

Genomic Coordinates Reverse (-)

18370865 .. 18374239

Gene Structure 3375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCGACTATTATGCAGAAGATCAAAGAAATTGAAGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAAGGCCAAGCTTGCTAAGCTTCGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGGTGGTGCTGGAGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGGATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGGTTGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGCTAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAGAGGAAGACAGGTTATAAGTACGGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGCCATAAAACCAATTACTCACAAGCGTCTCATTGAAAAAGAGCTCGAAGGATTCGGAATAAGGTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCTAACTTCTACAGTCGCTGTCACACACCTTGACCTTGACACCGTCAAGGCGATTTGCGGTGAGTACAGGATGCACAATGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCATTGATGTCATCGAGGGCAGTCGGATTTATATGCCCTGTATCTATGCTGTCAACAAGATCGATTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAGTGCGCATCTGGAGTGGAATCTTGATGGACTTCTGGACAAGATATGGGAATACTTGGATCTAACTCGAATCTACACAAAACCAAAGGCAATGAATCCGGATTATGATGATCCCGTAATCTTATCATCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAAACAATTCAAGTACGCTCTGGTTTGGGGTTCAAGTGCCAAACACAAGCCACAAAGAGTTGGAAAGGAACACGAGCTTGAGGACGAGGATGTTGTTCAGATCGTTAAAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0018130 GO:0019001 GO:0019003 GO:0019438 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0097659 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

369

Amino Acids

41.14

Weight (kDa)

8.62

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	67 - 178	7.4e-24	50S ribosome-binding GTPase
FeoB_N	PF02421	67 - 153	4.6e-11	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	187 - 292	2.8e-40	C-terminal region of MMR_HSR1 domain
TGS	PF02824	294 - 367	1.1e-20	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39520
fragaria_vesca	FvH4_1g22580 FvH4_1g22580
malus_domestica	MD01G1019800.v1.1 MD15G1332300.v1.1
prunus_persica	Prupe.6G172300_v2.0.a1
pyrus_communis	pycom01g04940 pycom15g29310
rosa_chinensis	RchiOBHm_Chr2g0116591
rosa_laevigata	RLG00000018291
rosa_multiflora	Rmu_sc0004191.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127040
rosa_rugosa	Rorug02G0207800
rosa_samantha	Rh2BG274500 Rh2DG271000 Rh2DG289600
rosa_wichuraiana	Rw2G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
Acc16I	TGCGCA	1 cut(s)	819
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	2 cut(s)	910, 972
AciI	CCGC	4 cut(s)	134, 150, 630, 681
AclWI	GGATC	2 cut(s)	879, 917
AcsI	RAATTY	2 cut(s)	535, 780
AfaI	GTAC	3 cut(s)	415, 638, 1007
AfiI	CCNNNNNNNGG	2 cut(s)	143, 227
AgsI	TTSAA	7 cut(s)	35, 488, 520, 759, 779, 1003, 1026
AjnI	CCWGG	2 cut(s)	310, 358
AluBI	AGCT	7 cut(s)	68, 103, 112, 253, 335, 496, 1069
AluI	AGCT	7 cut(s)	68, 103, 112, 253, 335, 496, 1069
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	879, 917
AlwNI	CAGNNNCTG	1 cut(s)	590
Aor13HI	TCCGGA	2 cut(s)	910, 972
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	535, 780
AspLEI	GCGC	2 cut(s)	669, 820
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	644, 652
AvaII	GGWCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	498
BauI	CACGAG	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	498
BccI	CCATC	3 cut(s)	37, 377, 833
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	312, 360
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	2 cut(s)	198, 420
BfmI	CTRYAG	1 cut(s)	582
BglII	AGATCT	1 cut(s)	352
BlpI	GCTNAGC	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	312, 360
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	122, 528
BmrFI	CCNGG	2 cut(s)	312, 360
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	6 cut(s)	442, 444, 633, 664, 829, 978
BmuI	ACTGGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	2 cut(s)	183, 845
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	788, 1091
Bsa29I	ATCGAT	1 cut(s)	753
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	2 cut(s)	910, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 227
Bse1I	ACTGG	3 cut(s)	213, 262, 343
Bse3DI	GCAATG	1 cut(s)	909
BseAI	TCCGGA	2 cut(s)	910, 972
BseBI	CCWGG	2 cut(s)	312, 360
BseCI	ATCGAT	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	4 cut(s)	648, 938, 969, 1087
BseLI	CCNNNNNNNGG	2 cut(s)	143, 227
BseMI	GCAATG	1 cut(s)	909
BseNI	ACTGG	3 cut(s)	213, 262, 343
BshFI	GGCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	911, 973
BslFI	GGGAC	2 cut(s)	134, 274
BslI	CCNNNNNNNGG	2 cut(s)	143, 227
BsmAI	GTCTC	1 cut(s)	485
BsmBI	CGTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	134, 274
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp13I	TCCGGA	2 cut(s)	910, 972
Bsp143I	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	134, 150, 630, 681
BspANI	GGCC	1 cut(s)	98
BspDI	ATCGAT	1 cut(s)	753
BspEI	TCCGGA	2 cut(s)	910, 972
BspLI	GGNNCC	2 cut(s)	122, 528
BspPI	GGATC	2 cut(s)	879, 917
BsrDI	GCAATG	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	213, 262, 343
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
BssSI	CACGAG	1 cut(s)	1064
Bst2BI	CACGAG	1 cut(s)	1064
Bst2UI	CCWGG	2 cut(s)	312, 360
Bst4CI	ACNGT	4 cut(s)	586, 616, 806, 955
Bst6I	CTCTTC	1 cut(s)	941
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	4 cut(s)	648, 938, 969, 1087
BstHHI	GCGC	2 cut(s)	669, 820
BstKTI	GATC	6 cut(s)	24, 355, 753, 874, 925, 1095
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 109
BstNI	CCWGG	2 cut(s)	312, 360
BstNSI	RCATGY	3 cut(s)	306, 429, 991
BstSCI	CCNGG	2 cut(s)	310, 358
BstSFI	CTRYAG	1 cut(s)	582
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	352, 871
BstYI	RGATCY	2 cut(s)	352, 871
Bsu15I	ATCGAT	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	98
BsuTUI	ATCGAT	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	648, 938, 969, 1087
BtsIMutI	CAGTG	1 cut(s)	820
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	2 cut(s)	669, 820
Cfr13I	GGNCC	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	753
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	414, 637, 1006
CviAII	CATG	3 cut(s)	303, 426, 988
CviQI	GTAC	3 cut(s)	414, 637, 1006
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	6 cut(s)	23, 354, 752, 873, 924, 1094
DpnII	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
Eam1104I	CTCTTC	1 cut(s)	941
EarI	CTCTTC	1 cut(s)	941
Ecl136II	GAGCTC	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	310, 358
EcoT22I	ATGCAT	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	3 cut(s)	306, 429, 991
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	2 cut(s)	134, 274
FatI	CATG	3 cut(s)	302, 425, 987
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	4 cut(s)	655, 925, 956, 1094
FriOI	GRGCYC	1 cut(s)	498
FspAI	RTGCGCAY	1 cut(s)	819
FspBI	CTAG	2 cut(s)	198, 420
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	2 cut(s)	668, 819
GsuI	CTGGAG	2 cut(s)	183, 845
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	911, 973
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	669, 820
Hin1II	CATG	3 cut(s)	306, 429, 991
Hin6I	GCGC	2 cut(s)	667, 818
HinP1I	GCGC	2 cut(s)	667, 818
HincII	GTYRAC	2 cut(s)	6, 745
HindII	GTYRAC	2 cut(s)	6, 745
HindIII	AAGCTT	2 cut(s)	101, 110
HinfI	GANTC	7 cut(s)	194, 504, 755, 832, 882, 907, 976
HpaII	CCGG	2 cut(s)	911, 973
HphI	GGTGA	2 cut(s)	644, 652
Hpy166II	GTNNAC	3 cut(s)	6, 291, 745
Hpy188I	TCNGA	6 cut(s)	117, 215, 271, 509, 717, 1092
Hpy188III	TCNNGA	8 cut(s)	198, 292, 449, 824, 836, 848, 911, 973
Hpy8I	GTNNAC	3 cut(s)	6, 291, 745
HpyAV	CCTTC	4 cut(s)	134, 161, 231, 494
HpyCH4III	ACNGT	4 cut(s)	586, 616, 806, 955
HpyCH4V	TGCA	8 cut(s)	16, 131, 306, 429, 435, 646, 677, 969
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 109
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	306, 429, 991
HspAI	GCGC	2 cut(s)	667, 818
Kpn2I	TCCGGA	2 cut(s)	910, 972
Kzo9I	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
LmnI	GCTCC	2 cut(s)	332, 526
LweI	GCATC	6 cut(s)	442, 444, 633, 664, 829, 978
MaeI	CTAG	2 cut(s)	198, 420
MaeIII	GTNAC	2 cut(s)	178, 592
MalI	GATC	6 cut(s)	23, 354, 752, 873, 924, 1094
MboI	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
MboII	GAAGA	6 cut(s)	31, 47, 70, 347, 411, 958
MflI	RGATCY	2 cut(s)	352, 871
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	5 cut(s)	30, 465, 535, 780, 998
MmeI	TCCRAC	5 cut(s)	184, 193, 208, 695, 1033
Mph1103I	ATGCAT	1 cut(s)	308
MroI	TCCGGA	2 cut(s)	910, 972
MseI	TTAA	6 cut(s)	92, 245, 440, 539, 993, 1098
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	911, 973
MspR9I	CCNGG	2 cut(s)	312, 360
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	312, 360
MwoI	GCNNNNNNNGC	2 cut(s)	104, 109
NdeII	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
NlaIII	CATG	3 cut(s)	306, 429, 991
NlaIV	GGNNCC	2 cut(s)	122, 528
NmuCI	GTSAC	2 cut(s)	178, 592
NsbI	TGCGCA	1 cut(s)	819
NsiI	ATGCAT	1 cut(s)	308
NspI	RCATGY	3 cut(s)	306, 429, 991
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	7 cut(s)	194, 504, 755, 832, 882, 907, 976
PflFI	GACNNNGTC	1 cut(s)	614
PpuMI	RGGWCCY	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	310, 358
PspGI	CCWGG	2 cut(s)	310, 358
PspN4I	GGNNCC	2 cut(s)	122, 528
PspPI	GGNCC	1 cut(s)	121
PspPPI	RGGWCCY	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	352, 871
PsyI	GACNNNGTC	1 cut(s)	614
RsaI	GTAC	3 cut(s)	415, 638, 1007
RsaNI	GTAC	3 cut(s)	414, 637, 1006
SacI	GAGCTC	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	6 cut(s)	92, 245, 440, 539, 993, 1098
Sau3AI	GATC	6 cut(s)	21, 352, 750, 871, 922, 1092
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	312, 360
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	6 cut(s)	442, 444, 633, 664, 829, 978
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	121
SmlI	CTYRAG	2 cut(s)	767, 1070
SmoI	CTYRAG	2 cut(s)	767, 1070
Sse9I	AATT	5 cut(s)	30, 465, 535, 780, 998
SsiI	CCGC	4 cut(s)	134, 150, 630, 681
SspMI	CTAG	2 cut(s)	198, 420
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	310, 358
TaaI	ACNGT	4 cut(s)	586, 616, 806, 955
TaqI	TCGA	5 cut(s)	5, 498, 705, 753, 880
TasI	AATT	5 cut(s)	30, 465, 535, 780, 998
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	7 cut(s)	194, 504, 755, 832, 882, 907, 976
Tru1I	TTAA	6 cut(s)	92, 245, 440, 539, 993, 1098
Tru9I	TTAA	6 cut(s)	92, 245, 440, 539, 993, 1098
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	178, 592
Tsp45I	GTSAC	2 cut(s)	178, 592
TspDTI	ATGAA	1 cut(s)	920
TspRI	CASTG	1 cut(s)	820
Tth111I	GACNNNGTC	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	121
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	535, 780
XbaI	TCTAGA	1 cut(s)	197
XceI	RCATGY	3 cut(s)	306, 429, 991
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	198, 420
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.