Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014439

Physical Location & Seq

Genomic Coordinates Forward (+)

4284766 .. 4291637

Gene Structure 6872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04940.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGACTCTGATGCAGAAAATCAAGGACATCGAAGATGAGATGGCTAGGACTCAAAAGAACAAAGCTACTGCCCATCACTTGGGTTTGCTGAAGGCTAAACTTGCAAAGCTAAGGAGAGACCTACTTGAGCCTCCGTCGAAAGGCGGTGGTGGTGCTGGTGAGGGTTTTGATGTTACTAAAAGCGGAGATGCAAGAGTTGGTTTGGTGGGTTTCCCTTCAGTTGGGAAATCTACACTGCTGAATAAATTAACTGGAACCTTTTCAGAGGTTGCTTCCTATGAATTCACTACTTTAACTTGCATACCAGGAGCGATCGTGTATCGAGGTGCAAAAATTCAGTTGATCGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGACAGGTTATCAGCACTGCTAGGACATGCAATTGCATTTTAATTGTTCTTGATGCAATAAAGCCAATAACTCACAAGCGTCTAATTGAAAAAGAGCTGGAGGGATTTGGCATAAGGTTAAACAAGGAACCACCTAACCTTACATTCCGGAAGAAAGATAAGGGTGGTATTAATTTCACTTCAACGGTTACAAACACACATCTGGATCTTGAAACTGTGAAGGCAATATGCAGTGAATACAGAATTCACAATGCTGATATCACTCTTAGGTTTGATGCAACGGCCGATGACCTCATAGATGTAATTGAAGGCAGTAGAATATATATGCCTTGCATCTATGTTGTGAACAAGATTGATCAGATTACACTTGAAGAGCTTGAGATTTTGGATAAACTTCCTCACTACTGTCCTGTCAGTGCTCATCTGGAGTGGAACCTTGATGGTTTGCTGGAGAAAATATGGGAGTATCTTAATTTAACTCGCATATATACAAAACCTAAAGGGATGAATCCAGACTATGAAGACCCTGTGATCCTGTCTTCTAAGACAAGGACGGTTGAGGATTTCTGTGAACGGATTCATAAAGATTTTATCAAACAATTTAAGTATGCTCTTGTTTGGGGGTCAAGCGCAAAGCACAAGCCCCAAAGAGTTGGCAAGGAACATCTGCTTGAGGACGAAGATGTTGTTCAGATTATCAAAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0018130 GO:0019001 GO:0019003 GO:0019438 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0097659 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

369

Amino Acids

41.23

Weight (kDa)

8.49

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39520
fragaria_vesca	FvH4_1g22580 FvH4_1g22580
malus_domestica	MD01G1019800.v1.1 MD15G1332300.v1.1
prunus_persica	Prupe.6G172300_v2.0.a1
pyrus_communis	pycom01g04940 pycom15g29310
rosa_chinensis	RchiOBHm_Chr2g0116591
rosa_laevigata	RLG00000018291
rosa_multiflora	Rmu_sc0004191.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127040
rosa_rugosa	Rorug02G0207800
rosa_samantha	Rh2BG274500 Rh2DG271000 Rh2DG289600
rosa_wichuraiana	Rw2G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	2 cut(s)	147, 186
AclWI	GGATC	2 cut(s)	609, 922
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	284, 336, 639
AcuI	CTGAAG	2 cut(s)	113, 204
AfiI	CCNNNNNNNGG	3 cut(s)	82, 143, 224
AgsI	TTSAA	5 cut(s)	485, 579, 608, 704, 767
AjnI	CCWGG	2 cut(s)	307, 355
AluBI	AGCT	4 cut(s)	68, 112, 493, 772
AluI	AGCT	4 cut(s)	68, 112, 493, 772
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	609, 922
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	1 cut(s)	678
ApoI	RAATTY	3 cut(s)	284, 336, 639
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	2 cut(s)	262, 972
AspLEI	GCGC	1 cut(s)	1028
AsuHPI	GGTGA	1 cut(s)	173
BbsI	GAAGAC	3 cut(s)	403, 924, 927
Bbv12I	GWGCWC	1 cut(s)	817
BccI	CCATC	4 cut(s)	37, 84, 374, 830
BceAI	ACGGC	1 cut(s)	693
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	309, 357
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	48, 417
Bme1390I	CCNGG	2 cut(s)	309, 357
BmiI	GGNNCC	3 cut(s)	259, 525, 830
BmrFI	CCNGG	2 cut(s)	309, 357
BmsI	GCATC	5 cut(s)	3, 181, 439, 661, 738
BpiI	GAAGAC	3 cut(s)	403, 924, 927
BpmI	CTGGAG	3 cut(s)	515, 842, 866
Bpu10I	CCTNAGC	2 cut(s)	113, 375
BpuEI	CTTGAG	3 cut(s)	149, 794, 1088
Bsa29I	ATCGAT	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 143, 224
Bse1I	ACTGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	309, 357
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	385, 906
BseLI	CCNNNNNNNGG	3 cut(s)	82, 143, 224
BseNI	ACTGG	1 cut(s)	259
BseX3I	CGGCCG	1 cut(s)	678
Bsh1285I	CGRYCG	2 cut(s)	318, 681
BshFI	GGCC	1 cut(s)	680
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	2 cut(s)	318, 681
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	3 cut(s)	82, 143, 224
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	680
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
BspACI	CCGC	2 cut(s)	147, 186
BspANI	GGCC	1 cut(s)	680
BspDI	ATCGAT	1 cut(s)	348
BspEI	TCCGGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	259, 525, 830
BspPI	GGATC	2 cut(s)	609, 922
BspQI	GCTCTTC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
Bst2UI	CCWGG	2 cut(s)	309, 357
Bst4CI	ACNGT	4 cut(s)	583, 613, 803, 952
Bst6I	CTCTTC	1 cut(s)	762
BstDEI	CTNAG	4 cut(s)	113, 375, 662, 939
BstF5I	GGATG	2 cut(s)	385, 906
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	6 cut(s)	318, 348, 352, 604, 754, 930
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
BstMCI	CGRYCG	2 cut(s)	318, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	309, 357
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	307, 355
BstV2I	GAAGAC	3 cut(s)	403, 924, 927
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	1 cut(s)	601
BstZI	CGGCCG	1 cut(s)	678
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	680
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	385, 906
BtsI	GCAGTG	3 cut(s)	236, 411, 634
BtsIMutI	CAGTG	4 cut(s)	236, 411, 634, 817
CfoI	GCGC	1 cut(s)	1028
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	464
CviAII	CATG	1 cut(s)	423
DdeI	CTNAG	4 cut(s)	113, 375, 662, 939
DpnI	GATC	6 cut(s)	317, 347, 351, 603, 753, 929
DpnII	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
EaeI	YGGCCR	1 cut(s)	678
EagI	CGGCCG	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EclXI	CGGCCG	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	655
Eco52I	CGGCCG	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	113, 204
EcoRI	GAATTC	2 cut(s)	284, 639
EcoRII	CCWGG	2 cut(s)	307, 355
EcoRV	GATATC	1 cut(s)	655
FaeI	CATG	1 cut(s)	426
FatI	CATG	1 cut(s)	422
FbaI	TGATCA	1 cut(s)	751
FokI	GGATG	2 cut(s)	392, 913
FspBI	CTAG	2 cut(s)	48, 417
GlaI	GCGC	1 cut(s)	1027
GsuI	CTGGAG	3 cut(s)	515, 842, 866
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	1028
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HinfI	GANTC	4 cut(s)	7, 52, 904, 973
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	742, 968
Hpy188I	TCNGA	4 cut(s)	12, 268, 756, 1089
Hpy188III	TCNNGA	6 cut(s)	446, 544, 599, 605, 821, 908
Hpy8I	GTNNAC	2 cut(s)	742, 968
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	88, 228, 610, 698
HpyCH4III	ACNGT	4 cut(s)	583, 613, 803, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	4 cut(s)	113, 375, 662, 939
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	1 cut(s)	1026
Kpn2I	TCCGGA	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	311
LweI	GCATC	5 cut(s)	3, 181, 439, 661, 738
MaeI	CTAG	2 cut(s)	48, 417
MaeIII	GTNAC	2 cut(s)	175, 583
MalI	GATC	6 cut(s)	317, 347, 351, 603, 753, 929
MboI	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
MboII	GAAGA	7 cut(s)	47, 408, 559, 779, 927, 929, 1088
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	46
MroI	TCCGGA	1 cut(s)	543
MroXI	GAANNNNTTC	2 cut(s)	262, 972
MseI	TTAA	8 cut(s)	251, 296, 437, 515, 567, 867, 872, 999
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	309, 357
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	309, 357
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	3 cut(s)	259, 525, 830
NspI	RCATGY	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	762
PdmI	GAANNNNTTC	2 cut(s)	262, 972
PfeI	GAWTC	2 cut(s)	904, 973
PflMI	CCANNNNNTGG	1 cut(s)	82
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	307, 355
PspGI	CCWGG	2 cut(s)	307, 355
PspN4I	GGNNCC	3 cut(s)	259, 525, 830
PsuI	RGATCY	1 cut(s)	601
PvuI	CGATCG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	8 cut(s)	251, 296, 437, 515, 567, 867, 872, 999
Sau3AI	GATC	6 cut(s)	315, 345, 349, 601, 751, 927
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	309, 357
SduI	GDGCHC	1 cut(s)	817
SfaNI	GCATC	5 cut(s)	3, 181, 439, 661, 738
SmlI	CTYRAG	3 cut(s)	128, 773, 1067
SmoI	CTYRAG	3 cut(s)	128, 773, 1067
SsiI	CCGC	2 cut(s)	147, 186
SspMI	CTAG	2 cut(s)	48, 417
StyD4I	CCNGG	2 cut(s)	307, 355
TaaI	ACNGT	4 cut(s)	583, 613, 803, 952
TaqI	TCGA	4 cut(s)	33, 140, 325, 348
TfiI	GAWTC	2 cut(s)	904, 973
Tru1I	TTAA	8 cut(s)	251, 296, 437, 515, 567, 867, 872, 999
Tru9I	TTAA	8 cut(s)	251, 296, 437, 515, 567, 867, 872, 999
TscAI	CASTG	4 cut(s)	243, 418, 634, 817
TspDTI	ATGAA	4 cut(s)	297, 917, 930, 965
TspGWI	ACGGA	2 cut(s)	126, 985
TspRI	CASTG	4 cut(s)	243, 418, 634, 817
Van91I	CCANNNNNTGG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	3 cut(s)	284, 336, 639
XceI	RCATGY	1 cut(s)	426
XmnI	GAANNNNTTC	2 cut(s)	262, 972
XspI	CTAG	2 cut(s)	48, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.