Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014439

Physical Location & Seq

Genomic Coordinates Forward (+)

14518916 .. 14525875

Gene Structure 6960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGACTCTAATGCAGAAAATCAAGGACATCGAAGATGAGATGGCCAGGACTCAAAAGAACAAGGCTACTGCCCATCACTTGGGTTTACTGAAGGCTAAACTTGCAAAGTTAAGGAGAGACCTACTTGAGCCCACAACAAAAGGTGGTGGTGGTGCTGGTGAAGGTTTTGACGTCACTAAAAGTGGAGATGCAAGGGTTGGCTTGGTGGGTTTCCCTTCTGTTGGGAAATCTACTCTACTGAATAAACTGACTGGGACTTTTTCAGAGGTTGCTTCCTATGAATTCACTACCTTGACTTGCATTCCAGGTGTGATTGTCTATCGAGGTGCAAAAATTCAGCTGTTGGATCTCCCTGGAATTATTGAGGGTGCAAAGGACGGTAAGGGTAGAGGAAGACAGGTTATCAGTACTGCTAGGACATGCAATTGCATTATAATTGTTCTAGATGCAATAAAGCCAATAACGCACAAACGACTTATTGAGAAAGAGCTTGAGGGATTTGGCATAAGGTTAAACAAGGAACCACCTAACCTGACCTTCAGGAAGAAAGAGAAGGGTGGGATCAATTTCACTTCAACGGTTACCAACACACATTTGGATCTTGAAACTGTGAAGGCGATTTGTAGTGAATATAGAATTCACAATGCTGATATCACTCTTAGGTTTGATGCAACTGCCGATGATCTCATAGATGTAATTGAAGGCAGTAGGGTATACATGCCTTGCATCTATGCTGTGAACAAGATTGATCAGATTACTCTTGAAGAACTTGAGATTTTGGATAAACTTCCTCACTACTGTCCAGTCAGTGCTCACCTAGAGTGGAACCTTGATGGTTTGCTGGAGAAGATATGGGAGTATCTCAATTTAACTCGCATATACACGAAACCTAAAGGGATGAATCCAGATTATGAAGATCCTGTGATCCTATCATCTAAGACGAGGACGGTTGAGGATTTCTGTGAGCGAATTCATAAAGATTTCATCAAACAATTCAAGTATGCTCTGGTTTGGGGGTCTAGCGCGAAACACAAGCCCCAAAGAGTTGGAAAGGAGCATCTGCTTGAAGATGAGGATGTTGTTCAGATCATCAAAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0018130 GO:0019001 GO:0019003 GO:0019438 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0097659 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

369

Amino Acids

41.24

Weight (kDa)

8.49

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	66 - 177	2.5e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	66 - 153	6.3e-11	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	186 - 291	5.7e-42	C-terminal region of MMR_HSR1 domain
TGS	PF02824	293 - 366	4.8e-21	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39520
fragaria_vesca	FvH4_1g22580 FvH4_1g22580
malus_domestica	MD01G1019800.v1.1 MD15G1332300.v1.1
prunus_persica	Prupe.6G172300_v2.0.a1
pyrus_communis	pycom01g04940 pycom15g29310
rosa_chinensis	RchiOBHm_Chr2g0116591
rosa_laevigata	RLG00000018291
rosa_multiflora	Rmu_sc0004191.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127040
rosa_rugosa	Rorug02G0207800
rosa_samantha	Rh2BG274500 Rh2DG271000 Rh2DG289600
rosa_wichuraiana	Rw2G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AatII	GACGTC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	1028
AclWI	GGATC	5 cut(s)	357, 572, 609, 914, 922
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	4 cut(s)	284, 336, 639, 972
AcuI	CTGAAG	2 cut(s)	113, 526
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	82, 224
AgsI	TTSAA	6 cut(s)	579, 608, 704, 767, 1000, 1070
AjnI	CCWGG	3 cut(s)	47, 307, 355
AluBI	AGCT	2 cut(s)	343, 493
AluI	AGCT	2 cut(s)	343, 493
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	5 cut(s)	357, 572, 609, 914, 922
AoxI	GGCC	1 cut(s)	45
ApoI	RAATTY	4 cut(s)	284, 336, 639, 972
AspLEI	GCGC	1 cut(s)	1028
AsuHPI	GGTGA	2 cut(s)	173, 809
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	817
BccI	CCATC	3 cut(s)	37, 84, 830
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	49, 309, 357
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	417, 446, 821, 1023
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	3 cut(s)	49, 309, 357
BmiI	GGNNCC	2 cut(s)	525, 830
BmrFI	CCNGG	3 cut(s)	49, 309, 357
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	5 cut(s)	181, 439, 661, 738, 1069
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	866
BpuEI	CTTGAG	3 cut(s)	149, 515, 794
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 224
Bse1I	ACTGG	2 cut(s)	259, 806
BseBI	CCWGG	3 cut(s)	49, 309, 357
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	906, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	82, 224
BseNI	ACTGG	2 cut(s)	259, 806
Bsh1236I	CGCG	1 cut(s)	1028
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	817
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	82, 224
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	135, 817
Bsp143I	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	1028
BspLI	GGNNCC	2 cut(s)	525, 830
BspPI	GGATC	5 cut(s)	357, 572, 609, 914, 922
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	259, 806
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	3 cut(s)	49, 309, 357
Bst4CI	ACNGT	5 cut(s)	383, 583, 613, 803, 952
BstACI	GRCGYC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	662, 939
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	906, 1084
BstFNI	CGCG	1 cut(s)	1028
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	8 cut(s)	352, 567, 604, 688, 754, 922, 930, 1092
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 466
BstNI	CCWGG	3 cut(s)	49, 309, 357
BstNSI	RCATGY	2 cut(s)	426, 724
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	3 cut(s)	47, 307, 355
BstUI	CGCG	1 cut(s)	1028
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	3 cut(s)	349, 601, 919
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	3 cut(s)	349, 601, 919
BstZ17I	GTATAC	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	906, 1084
BtsIMutI	CAGTG	1 cut(s)	817
CfoI	GCGC	1 cut(s)	1028
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	2 cut(s)	423, 721
CviJI	RGCY	9 cut(s)	47, 68, 98, 133, 204, 343, 460, 493, 1039
CviKI_1	RGCY	9 cut(s)	47, 68, 98, 133, 204, 343, 460, 493, 1039
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	662, 939
DpnI	GATC	8 cut(s)	351, 566, 603, 687, 753, 921, 929, 1091
DpnII	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
EaeI	YGGCCR	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	655
Eco57I	CTGAAG	2 cut(s)	113, 526
Eco91I	GGTNACC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	583
EcoRI	GAATTC	3 cut(s)	284, 639, 972
EcoRII	CCWGG	3 cut(s)	47, 307, 355
EcoRV	GATATC	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	426, 724
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	422, 720
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	717
FokI	GGATG	2 cut(s)	913, 1091
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	4 cut(s)	417, 446, 821, 1023
GlaI	GCGC	1 cut(s)	1027
GsuI	CTGGAG	1 cut(s)	866
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	426, 724
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HinfI	GANTC	3 cut(s)	7, 52, 904
HphI	GGTGA	2 cut(s)	173, 809
Hpy166II	GTNNAC	3 cut(s)	89, 718, 742
Hpy188I	TCNGA	3 cut(s)	268, 756, 1089
Hpy188III	TCNNGA	5 cut(s)	446, 544, 605, 764, 908
Hpy8I	GTNNAC	3 cut(s)	89, 718, 742
HpyAV	CCTTC	7 cut(s)	88, 158, 228, 550, 550, 610, 698
HpyCH4III	ACNGT	5 cut(s)	383, 583, 613, 803, 952
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 466
HpyF3I	CTNAG	2 cut(s)	662, 939
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	426, 724
HspAI	GCGC	1 cut(s)	1026
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
LmnI	GCTCC	1 cut(s)	1057
LweI	GCATC	5 cut(s)	181, 439, 661, 738, 1069
MaeI	CTAG	4 cut(s)	417, 446, 821, 1023
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	175, 583
MalI	GATC	8 cut(s)	351, 566, 603, 687, 753, 921, 929, 1091
MboI	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
MboII	GAAGA	7 cut(s)	47, 408, 559, 779, 862, 929, 1082
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	3 cut(s)	349, 601, 919
MhlI	GDGCHC	2 cut(s)	135, 817
MlsI	TGGCCA	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	327, 1030
MnlI	CCTC	9 cut(s)	262, 320, 361, 386, 490, 804, 939, 949, 1069
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	113, 515, 872
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	3 cut(s)	49, 309, 357
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	3 cut(s)	49, 309, 357
MvnI	CGCG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	2 cut(s)	104, 466
NdeII	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
NlaIII	CATG	2 cut(s)	426, 724
NlaIV	GGNNCC	2 cut(s)	525, 830
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	2 cut(s)	426, 724
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	904
PflMI	CCANNNNNTGG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	437
Psp6I	CCWGG	3 cut(s)	47, 307, 355
PspEI	GGTNACC	1 cut(s)	583
PspGI	CCWGG	3 cut(s)	47, 307, 355
PspN4I	GGNNCC	2 cut(s)	525, 830
PsuI	RGATCY	3 cut(s)	349, 601, 919
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	113, 515, 872
Sau3AI	GATC	8 cut(s)	349, 564, 601, 685, 751, 919, 927, 1089
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	49, 309, 357
SduI	GDGCHC	2 cut(s)	135, 817
SfaNI	GCATC	5 cut(s)	181, 439, 661, 738, 1069
SmlI	CTYRAG	3 cut(s)	128, 494, 773
SmoI	CTYRAG	3 cut(s)	128, 494, 773
SspMI	CTAG	4 cut(s)	417, 446, 821, 1023
StyD4I	CCNGG	3 cut(s)	47, 307, 355
TaaI	ACNGT	5 cut(s)	383, 583, 613, 803, 952
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	33, 325
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	3 cut(s)	113, 515, 872
Tru9I	TTAA	3 cut(s)	113, 515, 872
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	5 cut(s)	297, 917, 930, 965, 976
TspRI	CASTG	1 cut(s)	817
Van91I	CCANNNNNTGG	1 cut(s)	82
XapI	RAATTY	4 cut(s)	284, 336, 639, 972
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	426, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	4 cut(s)	417, 446, 821, 1023
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.