Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014439

Physical Location & Seq

Genomic Coordinates Reverse (-)

17724420 .. 17731183

Gene Structure 6764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGACTTTGATGCAGAAAATTAAGGACATCGAAGATGAGATGGCTAGGACTCAAAAGAACAAGGCTACTGCCCATCACTTGGGCTTGCTGAAGGCTAAACTTGCAAAGCTCAGGAGAGACCTACTTGAGCCTCCATCAAAAGGTGGTGGTGGTGCGGGTGAAGGTTTTGATGTCACTAAAAGCGGAGATGCAAGAGTTGGTTTGGTGGGTTTCCCTTCAGTTGGGAAATCTACACTGCTGAACAAATTAACAGGGACCTTCTCAGAGGTTGCTTCCTATGAATTCACGACCTTGACTTGCATCCCAGGTGTGATCGTGTATAGAGGTGCAAAAATTCAGTTGTTAGATCTACCTGGAATTATTGAGGGTGCTAAGGATGGAAAAGGTAGAGGAAGACAGGTTATCAGCACTGCTAGGACATGCAATTGCATTTTAATTGTTCTTGATGCAATAAAGCCAATAACTCACAAGCGTCTAATTGAGAAAGAGCTTGAGGGATTTGGCATAAGGTTAAACAAGGAACCACCTAATCTGACCTTCAGGAAGAAAGATAAGGGTGGGATTAATTTCACGTCAACAGTTACCAACACACATCTGGATCTTGATACTGTGAAGGCAATATGTAGCGAATACAGAATTCACAATGCTGATATCACTCTTAGGTTTGATGCAACTGCTGATGACCTCATAGATGTAATTGAAGGCAGTAGGATATATATGCCTTGCATCTATGTTGTGAACAAGATTGATCAGATTACACTTGAAGAGCTTGAGATTTTGGATAAACTTCCTCACTACTGTCCAGTCAGTGCTCACCTGGAATGGAATCTCGATGGTTTGCTGGAGAAAATATGGGAGTATCTTAATTTAACTCGCATATATACAAAACCTAAAGGGATGAATCCAGACTATGAAGATCCTGTGATTCTGTCGTCTAAGACAAGAACGGTTGAGGATTTCTGTGAACGGATTCATAAAGATTTTATTAAACAATTTAAGTATGCTCTGGTTTGGGGGTCAAGCGCGAAACACAAGCCCCAAAGAGTTGGCAAGGAGCATCTCCTCGAAGATGAAGATGTTGTTCAGATTATCAAAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0018130 GO:0019001 GO:0019003 GO:0019438 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0097659 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

369

Amino Acids

41.24

Weight (kDa)

8.49

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39520
fragaria_vesca	FvH4_1g22580 FvH4_1g22580
malus_domestica	MD01G1019800.v1.1 MD15G1332300.v1.1
prunus_persica	Prupe.6G172300_v2.0.a1
pyrus_communis	pycom01g04940 pycom15g29310
rosa_chinensis	RchiOBHm_Chr2g0116591
rosa_laevigata	RLG00000018291
rosa_multiflora	Rmu_sc0004191.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127040
rosa_rugosa	Rorug02G0207800
rosa_samantha	Rh2BG274500 Rh2DG271000 Rh2DG289600
rosa_wichuraiana	Rw2G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccII	CGCG	1 cut(s)	1028
AciI	CCGC	2 cut(s)	158, 186
AclWI	GGATC	2 cut(s)	609, 914
AcsI	RAATTY	3 cut(s)	284, 336, 639
AcuI	CTGAAG	3 cut(s)	113, 204, 526
AfiI	CCNNNNNNNGG	3 cut(s)	82, 143, 224
AgsI	TTSAA	2 cut(s)	704, 767
AjiI	CACGTC	1 cut(s)	576
AjnI	CCWGG	3 cut(s)	307, 355, 819
AluBI	AGCT	3 cut(s)	112, 493, 772
AluI	AGCT	3 cut(s)	112, 493, 772
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	609, 914
ApoI	RAATTY	3 cut(s)	284, 336, 639
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	972
AspLEI	GCGC	1 cut(s)	1028
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	173, 809
AvaII	GGWCC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	403
Bbv12I	GWGCWC	1 cut(s)	817
BccI	CCATC	5 cut(s)	37, 84, 145, 374, 830
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	309, 357, 821
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	48, 417
BglII	AGATCT	1 cut(s)	349
Bme1390I	CCNGG	3 cut(s)	309, 357, 821
Bme18I	GGWCC	1 cut(s)	258
BmgBI	CACGTC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	259, 525
BmrFI	CCNGG	3 cut(s)	309, 357, 821
BmsI	GCATC	7 cut(s)	3, 181, 312, 439, 661, 738, 1069
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	866
Bpu10I	CCTNAGC	2 cut(s)	113, 375
BpuEI	CTTGAG	3 cut(s)	149, 515, 794
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 143, 224
Bse1I	ACTGG	1 cut(s)	806
BseBI	CCWGG	3 cut(s)	309, 357, 821
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	3 cut(s)	303, 385, 906
BseLI	CCNNNNNNNGG	3 cut(s)	82, 143, 224
BseMII	CTCAG	2 cut(s)	127, 279
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	1055
Bsh1236I	CGCG	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	817
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	82, 143, 224
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp143I	GATC	5 cut(s)	315, 349, 601, 751, 919
BspACI	CCGC	2 cut(s)	158, 186
BspCNI	CTCAG	2 cut(s)	126, 278
BspFNI	CGCG	1 cut(s)	1028
BspLI	GGNNCC	2 cut(s)	259, 525
BspPI	GGATC	2 cut(s)	609, 914
BspQI	GCTCTTC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	5 cut(s)	315, 349, 601, 751, 919
Bst2UI	CCWGG	3 cut(s)	309, 357, 821
Bst4CI	ACNGT	4 cut(s)	583, 613, 803, 952
Bst6I	CTCTTC	1 cut(s)	762
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	5 cut(s)	113, 265, 375, 662, 939
BstF5I	GGATG	3 cut(s)	303, 385, 906
BstFNI	CGCG	1 cut(s)	1028
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	5 cut(s)	318, 352, 604, 754, 922
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	315, 349, 601, 751, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	3 cut(s)	309, 357, 821
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	307, 355, 819
BstUI	CGCG	1 cut(s)	1028
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	3 cut(s)	349, 601, 919
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	3 cut(s)	349, 601, 919
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	3 cut(s)	303, 385, 906
BtsI	GCAGTG	2 cut(s)	236, 411
BtsIMutI	CAGTG	3 cut(s)	236, 411, 817
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	1028
Cfr13I	GGNCC	1 cut(s)	258
CseI	GACGC	1 cut(s)	464
CviAII	CATG	1 cut(s)	423
DdeI	CTNAG	5 cut(s)	113, 265, 375, 662, 939
DpnI	GATC	5 cut(s)	317, 351, 603, 753, 921
DpnII	GATC	5 cut(s)	315, 349, 601, 751, 919
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	3 cut(s)	113, 204, 526
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRI	GAATTC	2 cut(s)	284, 639
EcoRII	CCWGG	3 cut(s)	307, 355, 819
EcoRV	GATATC	1 cut(s)	655
FaeI	CATG	1 cut(s)	426
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	1 cut(s)	422
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	751
FokI	GGATG	3 cut(s)	290, 392, 913
FspBI	CTAG	2 cut(s)	48, 417
GlaI	GCGC	1 cut(s)	1027
GsuI	CTGGAG	1 cut(s)	866
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	1028
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	5 cut(s)	52, 829, 904, 928, 973
HphI	GGTGA	2 cut(s)	173, 809
Hpy166II	GTNNAC	3 cut(s)	579, 742, 968
Hpy188I	TCNGA	4 cut(s)	268, 537, 756, 1089
Hpy188III	TCNNGA	8 cut(s)	115, 289, 446, 544, 599, 605, 833, 908
Hpy8I	GTNNAC	3 cut(s)	579, 742, 968
HpyAV	CCTTC	7 cut(s)	88, 158, 228, 271, 550, 610, 698
HpyCH4III	ACNGT	4 cut(s)	583, 613, 803, 952
HpyCH4IV	ACGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	5 cut(s)	113, 265, 375, 662, 939
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	1 cut(s)	1026
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	315, 349, 601, 751, 919
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	1057
LweI	GCATC	7 cut(s)	3, 181, 312, 439, 661, 738, 1069
MaeI	CTAG	2 cut(s)	48, 417
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	175, 583
MalI	GATC	5 cut(s)	317, 351, 603, 753, 921
MboI	GATC	5 cut(s)	315, 349, 601, 751, 919
MboII	GAAGA	7 cut(s)	47, 408, 559, 779, 929, 1082, 1088
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	3 cut(s)	349, 601, 919
MhlI	GDGCHC	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	9 cut(s)	24, 251, 437, 515, 567, 867, 872, 990, 999
MspR9I	CCNGG	3 cut(s)	309, 357, 821
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	3 cut(s)	309, 357, 821
MvnI	CGCG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	5 cut(s)	315, 349, 601, 751, 919
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	2 cut(s)	259, 525
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	4 cut(s)	829, 904, 928, 973
PflMI	CCANNNNNTGG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	3 cut(s)	307, 355, 819
PspGI	CCWGG	3 cut(s)	307, 355, 819
PspN4I	GGNNCC	2 cut(s)	259, 525
PspPI	GGNCC	1 cut(s)	258
PspPPI	RGGWCCY	1 cut(s)	258
PsuI	RGATCY	3 cut(s)	349, 601, 919
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	9 cut(s)	24, 251, 437, 515, 567, 867, 872, 990, 999
Sau3AI	GATC	5 cut(s)	315, 349, 601, 751, 919
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	309, 357, 821
SduI	GDGCHC	1 cut(s)	817
SfaNI	GCATC	7 cut(s)	3, 181, 312, 439, 661, 738, 1069
SinI	GGWCC	1 cut(s)	258
SmlI	CTYRAG	3 cut(s)	128, 494, 773
SmoI	CTYRAG	3 cut(s)	128, 494, 773
SsiI	CCGC	2 cut(s)	158, 186
SspMI	CTAG	2 cut(s)	48, 417
StyD4I	CCNGG	3 cut(s)	307, 355, 819
TaaI	ACNGT	4 cut(s)	583, 613, 803, 952
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	3 cut(s)	33, 834, 1068
TfiI	GAWTC	4 cut(s)	829, 904, 928, 973
Tru1I	TTAA	9 cut(s)	24, 251, 437, 515, 567, 867, 872, 990, 999
Tru9I	TTAA	9 cut(s)	24, 251, 437, 515, 567, 867, 872, 990, 999
TscAI	CASTG	3 cut(s)	243, 418, 817
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	5 cut(s)	297, 917, 930, 965, 1089
TspGWI	ACGGA	1 cut(s)	985
TspRI	CASTG	3 cut(s)	243, 418, 817
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	258
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	3 cut(s)	284, 336, 639
XceI	RCATGY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	2 cut(s)	48, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.