Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014439

Physical Location & Seq

Genomic Coordinates Forward (+)

29656555 .. 29663309

Gene Structure 6755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGACTGTTATGCAGAAAATCAAGGACATCGAAGATGAGATGGCTAGGACTCAAAAGAACAAGGCTACTGCCCATCACTTGGGTTTGCTGAAGGCTAAACTTGCAAAGTTAAGGAGAGACCTACTTGAGCCCACAACGAAAGGCGGTGGTGGTGCTGGTGAGGGTTTTGACGTCACTAAAAGTGGAGATGCAAGAGTTGGTTTGGTGGGTTTCCCTTCAGTTGGGAAATCTACTCTGCTGAATAAATTGACTGGGACTTTTTCAGAGGTTGCTTCCTATGAATTCACTACCTTAACCTGCATTCCAGGTGTGATTGTCTATCGAGGTGCAAAGATTCAGCTGTTGGATCTCCCTGGAATTATTGAGGGTGCGAAGGACGGAAAGGGTAGAGGAAGACAGGTTATCAGCACTGCTAGGACATGCAATTGCATATTAATTGTTCTAGATGCAATAAAGCCAATAACTCACAAACGTCTAATTGAGAAAGAGCTTGAGGGATTTGGCATAAGGTTAAACAAGGAACCACCTAATCTGACCTTCAGGAAGAAAGAGAAGGGTGGGATCAATTTCACTTCAACGGTTACCAACACACATTTGGATCTTGAAACTGTGAAGGCGATTTGTAGTGAATATAGAATTCACAATGCTGATATCACTCTTAGGTTTGATGCAACTGCCGATGACCTCATAGATGTAATTGAAGGCAGTAGGGTATACATGCCCTGCATCTATGCTGTGAACAAGATTGATCAGATTACTCTTGAAGAACTTGAGATTTTGGATAAACTTCCTCACTACTGTCCAGTCAGTGCTCACCTAGAGTGGAACCTTGACGGTTTGCTGGAGAAGATATGGGAGTATCTAAATTTAACTCGCATATACACGAAACCTAAAGGGATGAATCCAGATTATGAAGACCCTGTGATCCTATCATCTAAGACAAGGACAGTTGAGGATTTCTGTGAGCGAATTCATAAAGATTTTATTAAACAATTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0018130 GO:0019001 GO:0019003 GO:0019438 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0097659 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

334

Amino Acids

37.35

Weight (kDa)

8.33

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	66 - 177	1.5e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	66 - 152	1e-10	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	186 - 291	4.7e-42	C-terminal region of MMR_HSR1 domain
TGS	PF02824	293 - 334	1.3e-06	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39520
fragaria_vesca	FvH4_1g22580 FvH4_1g22580
malus_domestica	MD01G1019800.v1.1 MD15G1332300.v1.1
prunus_persica	Prupe.6G172300_v2.0.a1
pyrus_communis	pycom01g04940 pycom15g29310
rosa_chinensis	RchiOBHm_Chr2g0116591
rosa_laevigata	RLG00000018291
rosa_multiflora	Rmu_sc0004191.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127040
rosa_rugosa	Rorug02G0207800
rosa_samantha	Rh2BG274500 Rh2DG271000 Rh2DG289600
rosa_wichuraiana	Rw2G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	4 cut(s)	357, 572, 609, 922
AcsI	RAATTY	4 cut(s)	284, 639, 868, 972
AcuI	CTGAAG	3 cut(s)	113, 204, 526
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	82, 224
AgsI	TTSAA	5 cut(s)	579, 608, 704, 767, 1000
AjnI	CCWGG	2 cut(s)	307, 355
AluBI	AGCT	2 cut(s)	343, 493
AluI	AGCT	2 cut(s)	343, 493
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	4 cut(s)	357, 572, 609, 922
ApoI	RAATTY	4 cut(s)	284, 639, 868, 972
AseI	ATTAAT	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	173, 809
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	403, 924
Bbv12I	GWGCWC	1 cut(s)	817
BccI	CCATC	2 cut(s)	37, 84
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	309, 357
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	48, 417, 446, 821
BfuAI	ACCTGC	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	309, 357
BmiI	GGNNCC	2 cut(s)	525, 830
BmrFI	CCNGG	2 cut(s)	309, 357
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	181, 439, 661, 738
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	2 cut(s)	403, 924
BpmI	CTGGAG	1 cut(s)	866
BpuEI	CTTGAG	3 cut(s)	149, 515, 794
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 224
Bse1I	ACTGG	2 cut(s)	259, 806
BseBI	CCWGG	2 cut(s)	309, 357
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	906
BseLI	CCNNNNNNNGG	2 cut(s)	82, 224
BseNI	ACTGG	2 cut(s)	259, 806
BsiHKAI	GWGCWC	1 cut(s)	817
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	82, 224
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	135, 817
Bsp143I	GATC	5 cut(s)	349, 564, 601, 751, 927
BspACI	CCGC	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	525, 830
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	4 cut(s)	357, 572, 609, 922
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	259, 806
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	5 cut(s)	349, 564, 601, 751, 927
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	309, 357
Bst4CI	ACNGT	6 cut(s)	10, 583, 613, 803, 839, 952
BstACI	GRCGYC	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	662, 939
BstEII	GGTNACC	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	906
BstKTI	GATC	5 cut(s)	352, 567, 604, 754, 930
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	349, 564, 601, 751, 927
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	309, 357
BstNSI	RCATGY	2 cut(s)	426, 724
BstPI	GGTNACC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	307, 355
BstV2I	GAAGAC	2 cut(s)	403, 924
BstX2I	RGATCY	2 cut(s)	349, 601
BstYI	RGATCY	2 cut(s)	349, 601
BstZ17I	GTATAC	1 cut(s)	718
BtsCI	GGATG	1 cut(s)	906
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 817
BveI	ACCTGC	1 cut(s)	308
CviAII	CATG	2 cut(s)	423, 721
CviJI	RGCY	7 cut(s)	47, 68, 98, 133, 343, 460, 493
CviKI_1	RGCY	7 cut(s)	47, 68, 98, 133, 343, 460, 493
DdeI	CTNAG	2 cut(s)	662, 939
DpnI	GATC	5 cut(s)	351, 566, 603, 753, 929
DpnII	GATC	5 cut(s)	349, 564, 601, 751, 927
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	655
Eco57I	CTGAAG	3 cut(s)	113, 204, 526
Eco91I	GGTNACC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	583
EcoRI	GAATTC	3 cut(s)	284, 639, 972
EcoRII	CCWGG	2 cut(s)	307, 355
EcoRV	GATATC	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	426, 724
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	422, 720
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	717
FokI	GGATG	1 cut(s)	913
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	4 cut(s)	48, 417, 446, 821
GsuI	CTGGAG	1 cut(s)	866
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	426, 724
HinfI	GANTC	3 cut(s)	52, 337, 904
HphI	GGTGA	2 cut(s)	173, 809
Hpy166II	GTNNAC	2 cut(s)	718, 742
Hpy188I	TCNGA	3 cut(s)	268, 537, 756
Hpy188III	TCNNGA	5 cut(s)	446, 544, 605, 764, 908
Hpy8I	GTNNAC	2 cut(s)	718, 742
HpyAV	CCTTC	7 cut(s)	88, 228, 370, 550, 550, 610, 698
HpyCH4III	ACNGT	6 cut(s)	10, 583, 613, 803, 839, 952
HpyCH4IV	ACGT	2 cut(s)	174, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	662, 939
HpySE526I	ACGT	2 cut(s)	174, 475
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	426, 724
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	349, 564, 601, 751, 927
LweI	GCATC	4 cut(s)	181, 439, 661, 738
MaeI	CTAG	4 cut(s)	48, 417, 446, 821
MaeII	ACGT	2 cut(s)	174, 475
MaeIII	GTNAC	2 cut(s)	175, 583
MalI	GATC	5 cut(s)	351, 566, 603, 753, 929
MboI	GATC	5 cut(s)	349, 564, 601, 751, 927
MboII	GAAGA	6 cut(s)	47, 408, 559, 779, 862, 929
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	2 cut(s)	349, 601
MhlI	GDGCHC	2 cut(s)	135, 817
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	9 cut(s)	157, 262, 320, 361, 386, 490, 698, 804, 949
MseI	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	2 cut(s)	309, 357
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	2 cut(s)	309, 357
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	5 cut(s)	349, 564, 601, 751, 927
NlaIII	CATG	2 cut(s)	426, 724
NlaIV	GGNNCC	2 cut(s)	525, 830
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	2 cut(s)	426, 724
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	337, 904
PflMI	CCANNNNNTGG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	307, 355
PspEI	GGTNACC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	307, 355
PspN4I	GGNNCC	2 cut(s)	525, 830
PsuI	RGATCY	2 cut(s)	349, 601
PvuII	CAGCTG	1 cut(s)	343
SaqAI	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
Sau3AI	GATC	5 cut(s)	349, 564, 601, 751, 927
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	309, 357
SduI	GDGCHC	2 cut(s)	135, 817
SfaNI	GCATC	4 cut(s)	181, 439, 661, 738
SmlI	CTYRAG	3 cut(s)	128, 494, 773
SmoI	CTYRAG	3 cut(s)	128, 494, 773
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	4 cut(s)	48, 417, 446, 821
StyD4I	CCNGG	2 cut(s)	307, 355
TaaI	ACNGT	6 cut(s)	10, 583, 613, 803, 839, 952
TaiI	ACGT	2 cut(s)	177, 478
TaqI	TCGA	2 cut(s)	33, 325
TfiI	GAWTC	2 cut(s)	337, 904
Tru1I	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
Tru9I	TTAA	6 cut(s)	113, 296, 437, 515, 872, 990
TscAI	CASTG	2 cut(s)	418, 817
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	297, 917, 930, 965
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	418, 817
Van91I	CCANNNNNTGG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	437
XapI	RAATTY	4 cut(s)	284, 639, 868, 972
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	426, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	4 cut(s)	48, 417, 446, 821
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.