Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000239

Physical Location & Seq

Genomic Coordinates Reverse (-)

19477420 .. 19482843

Gene Structure 5424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGGCGTCTAACGGTGACGGAGATTTCAGCTTCCCGACTGGGAACGGCCCGGCGGCGGTGAGGAACGGCAACGGAGCGGCGAGGAACGGGCTGGCGAAGATCCATACGACGCCGAAGAACGGAAATGGGGTGTGCCACGACGACAGCTCGGCGACGGTGAAGGCTCAGACCATCGACCAGCTTCATTCGCTGCAGAAGAAGAAGTCGGCACCGACGACACCCATCAAGGGCACTCAGGGAGACTTTGCTGTCGCTCTCTCCGAGGAGGAACGCCAGATGCAGCAGCTCCAGTCCATCAGTAACTCTCTGGCGTCGCTGACGAGAGGGACTGGACCAAAGGTTGTGAGAGGAGACCCTGCTCAGCAGTCTCCTCATCATACCCCGAAGGTGTCATCGCACCACCATCATTTCACTCCCACCATCAGCGTCAGTGACAGTGCCCTCAAGTTCACCCATGTCCTCTACAACCTCTCTCCTGCTGAGCTATATGAGCAGGCGATAAATAACGAAAAGGGGTCGTTCGTTACGTCAACAGGCGCATTAGCAACACTTTCTGGAGCCAAGACAGGTCGGTCTCCAAGAGATAAACGCGTCGTCAAGGATGAGACCACAGAAGAGGAGCTTTGGTGGGGAAGGGGTTCACCGAACATTGAGATGGACGAGCACACTTTCATGGTCAACAGGGAAAGAGCTGTGGATTACCTGAATTCTTTGGACAAGGTCTTTGTAAATGACCAATACTTGAACTGGGATCCAGAAAACAGAATCAAAGTGCGGATTGTCTCTGCCAGGGCTTATCATTCTTTGTTCATGCACAACATGTGTATCCGACCCAGTCCTGAAGAGCTGGAGAATTTTGGTACTCCGGACTTCACTATTTACAATGCTGGTCAGTTCCCGTGTAATCGTTACACCCACTATATGACATCCTCCACTAGCATAGATCTTAATCTTGGTAGGAAGGAAATGGTCATCCTCGGCACCATGTATGCCGGGGAAATGAAGAAAGGCCTTTTCAGTCTCATGCATTATCTCATGCCTAAGCGACAAATCCTATCCCTACATTCTGGCTGCAATATGGGGAAAGATGGAGATGTCGCACTCTTCTTTGGATTGTCAGGTACTGGGAAGACAACTCTGTCTACTGATCACAATAGATACCTAATTGGAGATGATGAACACTGTTGGACTGAGAATGGTGTATCAAATATCGAAGGTGGTTGCTATGCCAAGTGTATTGATCTCTCGAGGGAGAAAGAACCTGACATTTGGAATGCCATCAAGTTTGGTGCTGTGTTGGAAAATGTCGTGTTTGATGAGCATACTCGAGAAGTGGATTATTCTGACAAATCTGTTACAGAGAATACTCGGGCAGCCTACCCCATTGAGTACATTCCCAATGCAAAAATACCGTGTGTTGGTCCTCATCCGAAGAATGTGATACTTTTGGCATGTGATGCATTTGGTGTGCTCCCACCTGTGAGCAAGTTAAACCTGGCACAGACCATGTACCATTTCATTAGTGGCTATACTGCACTGGTTGCTGGAACTGAAGAGGGCATTAAGGAGCCACAGGCAACATTCTCGGCTTGCTTTGGTGCTGCATTTATAATGTTGCATCCAACGAAGTATGCAGCAATGCTTGCTCAGAAAATGCAGCAGCATGGTGCAACTGGATGGCTGGTCAACACTGGCTGGTCTGGTGGAAGGTATGGTTCTGGAAAGCGCATTAAGCTACCCTACACCAGGAAAATCATCGACGCCATACACTCTGGCAGCCTCTTGAATGCAAATTACAAGAAGACTGAAGTGTTTGGACTTGAGATCCCCACTGAGATTGAGGGAGTGCCTTCAGAAATACTGGATCCAGTGAACACTTGGTCGGACAAGAATGCATACCAGGAAACACTCCTGAAGTTGGCTGGTCTATTTAAGAACAACTTTGAGACTTTCACAAACTACAAGATTGGCAAGGACAACAAGCTGACTGAAGAAATTCTCGCTGCTGGTCCAAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0018130 GO:0019001 GO:0019003 GO:0019438 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0097659 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

673

Amino Acids

74.25

Weight (kDa)

6.57

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	152 - 619	6e-215	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica	MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica	Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis	pycom02g16380 pycom11g06340
rosa_chinensis	RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata	RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora	Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii	Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa	Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha	Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana	Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1610
AasI	GACNNNNNNGTC	3 cut(s)	248, 571, 1138
AccB1I	GGYRCC	2 cut(s)	208, 980
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	1142
AccII	CGCG	1 cut(s)	591
AccIII	TCCGGA	1 cut(s)	865
AciI	CCGC	4 cut(s)	53, 56, 77, 775
AclWI	GGATC	6 cut(s)	94, 746, 759, 1819, 1859, 1872
AcsI	RAATTY	4 cut(s)	706, 853, 1995, 2014
AcuI	CTGAAG	6 cut(s)	861, 1572, 1827, 1836, 1934, 2010
AcyI	GRCGYC	4 cut(s)	5, 110, 311, 1761
AfaI	GTAC	4 cut(s)	862, 1123, 1391, 1511
AfiI	CCNNNNNNNGG	6 cut(s)	55, 119, 227, 1418, 1746, 1918
AflIII	ACRYGT	2 cut(s)	589, 819
AgsI	TTSAA	2 cut(s)	745, 1786
AjnI	CCWGG	4 cut(s)	788, 1494, 1745, 1899
Alw21I	GWGCWC	2 cut(s)	666, 1473
Alw26I	GTCTC	8 cut(s)	234, 345, 372, 579, 599, 787, 1025, 1940
AlwI	GGATC	6 cut(s)	94, 746, 759, 1819, 1859, 1872
AlwNI	CAGNNNCTG	1 cut(s)	1124
Ama87I	CYCGRG	3 cut(s)	1246, 1326, 1368
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	2 cut(s)	46, 1009
ApoI	RAATTY	4 cut(s)	706, 853, 1995, 2014
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
Asp700I	GAANNNNTTC	2 cut(s)	637, 1995
AspLEI	GCGC	2 cut(s)	539, 1728
AspS9I	GGNCC	4 cut(s)	47, 332, 1421, 2009
AsuC2I	CCSGG	2 cut(s)	50, 994
AsuHPI	GGTGA	5 cut(s)	26, 70, 169, 442, 633
AvaI	CYCGRG	3 cut(s)	1246, 1326, 1368
AvaII	GGWCC	3 cut(s)	332, 1421, 2009
BaeGI	GKGCMC	2 cut(s)	233, 442
BaeI	ACNNNNGTAYC	2 cut(s)	808, 841
BamHI	GGATCC	2 cut(s)	751, 1864
BanI	GGYRCC	2 cut(s)	208, 980
BbsI	GAAGAC	2 cut(s)	1136, 1808
Bbv12I	GWGCWC	2 cut(s)	666, 1473
BccI	CCATC	9 cut(s)	179, 230, 302, 411, 428, 649, 1082, 1286, 1671
BceAI	ACGGC	2 cut(s)	61, 82
BcgI	CGANNNNNNTGC	2 cut(s)	1566, 1600
BciT130I	CCWGG	4 cut(s)	790, 1496, 1747, 1901
BciVI	GTATCC	1 cut(s)	836
BclI	TGATCA	1 cut(s)	1147
BcnI	CCSGG	2 cut(s)	50, 994
BcoDI	GTCTC	8 cut(s)	234, 345, 372, 579, 599, 787, 1025, 1940
BfaI	CTAG	2 cut(s)	936, 2020
BfmI	CTRYAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	836
BglII	AGATCT	1 cut(s)	943
BlpI	GCTNAGC	2 cut(s)	360, 480
Bme1390I	CCNGG	6 cut(s)	50, 790, 994, 1496, 1747, 1901
Bme18I	GGWCC	3 cut(s)	332, 1421, 2009
BmeT110I	CYCGRG	3 cut(s)	1246, 1326, 1368
BmgT120I	GGNCC	4 cut(s)	47, 332, 1421, 2009
BmiI	GGNNCC	6 cut(s)	210, 559, 753, 982, 1569, 1866
BmrFI	CCNGG	6 cut(s)	50, 790, 994, 1496, 1747, 1901
BmrI	ACTGGG	4 cut(s)	48, 757, 828, 1134
BmsI	GCATC	3 cut(s)	267, 1447, 1627
BmuI	ACTGGG	4 cut(s)	48, 757, 828, 1134
BpiI	GAAGAC	2 cut(s)	1136, 1808
BpmI	CTGGAG	3 cut(s)	272, 576, 869
Bpu10I	CCTNAGC	1 cut(s)	1041
Bpu1102I	GCTNAGC	2 cut(s)	360, 480
BpuEI	CTTGAG	2 cut(s)	428, 1841
BpuMI	CCSGG	2 cut(s)	50, 994
BsaBI	GATNNNNATC	1 cut(s)	948
BsaHI	GRCGYC	4 cut(s)	5, 110, 311, 1761
BsaI	GGTCTC	3 cut(s)	345, 579, 599
BsaJI	CCNNGG	4 cut(s)	261, 789, 976, 993
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 119, 227, 1418, 1746, 1918
Bse3DI	GCAATG	1 cut(s)	1644
Bse8I	GATNNNNATC	1 cut(s)	948
BseAI	TCCGGA	1 cut(s)	865
BseBI	CCWGG	4 cut(s)	790, 1496, 1747, 1901
BseDI	CCNNGG	4 cut(s)	261, 789, 976, 993
BseGI	GGATG	6 cut(s)	607, 926, 972, 1426, 1618, 1682
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	6 cut(s)	55, 119, 227, 1418, 1746, 1918
BseMI	GCAATG	1 cut(s)	1644
BseMII	CTCAG	7 cut(s)	179, 248, 374, 471, 1182, 1661, 1824
BseRI	GAGGAG	4 cut(s)	278, 360, 363, 632
BseSI	GKGCMC	2 cut(s)	233, 442
BsgI	GTGCAG	1 cut(s)	1518
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	48, 1011
BshNI	GGYRCC	2 cut(s)	208, 980
BsiHKAI	GWGCWC	2 cut(s)	666, 1473
BsiHKCI	CYCGRG	3 cut(s)	1246, 1326, 1368
BsiSI	CCGG	3 cut(s)	50, 866, 993
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	6 cut(s)	55, 119, 227, 1418, 1746, 1918
BsmAI	GTCTC	8 cut(s)	234, 345, 372, 579, 599, 787, 1025, 1940
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	3 cut(s)	1279, 1792, 1897
BsnI	GGCC	2 cut(s)	48, 1011
Bso31I	GGTCTC	3 cut(s)	345, 579, 599
BsoBI	CYCGRG	3 cut(s)	1246, 1326, 1368
Bsp1286I	GDGCHC	4 cut(s)	233, 442, 666, 1473
Bsp13I	TCCGGA	1 cut(s)	865
Bsp143I	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
Bsp1720I	GCTNAGC	2 cut(s)	360, 480
BspACI	CCGC	4 cut(s)	53, 56, 77, 775
BspANI	GGCC	2 cut(s)	48, 1011
BspCNI	CTCAG	7 cut(s)	178, 247, 373, 472, 1183, 1660, 1825
BspEI	TCCGGA	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	6 cut(s)	210, 559, 753, 982, 1569, 1866
BspMAI	CTGCAG	1 cut(s)	195
BspPI	GGATC	6 cut(s)	94, 746, 759, 1819, 1859, 1872
BspQI	GCTCTTC	1 cut(s)	837
BspT107I	GGYRCC	2 cut(s)	208, 980
BspTNI	GGTCTC	3 cut(s)	345, 579, 599
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	1644
BssECI	CCNNGG	4 cut(s)	261, 789, 976, 993
BssMI	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
BssNI	GRCGYC	4 cut(s)	5, 110, 311, 1761
Bst2UI	CCWGG	4 cut(s)	790, 1496, 1747, 1901
Bst4CI	ACNGT	5 cut(s)	14, 157, 437, 1184, 1413
Bst6I	CTCTTC	4 cut(s)	609, 837, 1109, 1548
BstACI	GRCGYC	4 cut(s)	5, 110, 311, 1761
BstAPI	GCANNNNNTGC	3 cut(s)	1457, 1541, 1643
BstC8I	GCNNGC	4 cut(s)	93, 495, 1591, 1644
BstDEI	CTNAG	8 cut(s)	165, 234, 360, 480, 1041, 1191, 1647, 1833
BstENI	CCTNNNNNAGG	1 cut(s)	1744
BstF5I	GGATG	6 cut(s)	607, 926, 972, 1426, 1618, 1682
BstFNI	CGCG	1 cut(s)	591
BstHHI	GCGC	2 cut(s)	539, 1728
BstKTI	GATC	7 cut(s)	102, 754, 946, 1150, 1243, 1827, 1867
BstMAI	GTCTC	8 cut(s)	234, 345, 372, 579, 599, 787, 1025, 1940
BstMBI	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
BstMWI	GCNNNNNNNGC	6 cut(s)	187, 490, 1457, 1541, 1643, 1732
BstNI	CCWGG	4 cut(s)	790, 1496, 1747, 1901
BstNSI	RCATGY	2 cut(s)	823, 1455
BstSCI	CCNGG	6 cut(s)	48, 788, 992, 1494, 1745, 1899
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	2 cut(s)	233, 442
BstUI	CGCG	1 cut(s)	591
BstV2I	GAAGAC	2 cut(s)	1136, 1808
BstX2I	RGATCY	5 cut(s)	99, 751, 943, 1824, 1864
BstYI	RGATCY	5 cut(s)	99, 751, 943, 1824, 1864
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	2 cut(s)	48, 1011
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	6 cut(s)	607, 926, 972, 1426, 1618, 1682
BtsIMutI	CAGTG	7 cut(s)	436, 442, 1180, 1535, 1689, 1830, 1875
Cac8I	GCNNGC	4 cut(s)	93, 495, 1591, 1644
CaiI	CAGNNNCTG	1 cut(s)	1124
CfoI	GCGC	2 cut(s)	539, 1728
Cfr13I	GGNCC	4 cut(s)	47, 332, 1421, 2009
CseI	GACGC	5 cut(s)	118, 300, 415, 580, 1769
Csp6I	GTAC	4 cut(s)	861, 1122, 1390, 1510
CspCI	CAANNNNNGTGG	2 cut(s)	1819, 1854
CviQI	GTAC	4 cut(s)	861, 1122, 1390, 1510
DdeI	CTNAG	8 cut(s)	165, 234, 360, 480, 1041, 1191, 1647, 1833
DpnI	GATC	7 cut(s)	101, 753, 945, 1149, 1242, 1826, 1866
DpnII	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
DrdI	GACNNNNNNGTC	3 cut(s)	248, 571, 1138
DseDI	GACNNNNNNGTC	3 cut(s)	248, 571, 1138
Eam1104I	CTCTTC	4 cut(s)	609, 837, 1109, 1548
EarI	CTCTTC	4 cut(s)	609, 837, 1109, 1548
Eco147I	AGGCCT	1 cut(s)	1011
Eco31I	GGTCTC	3 cut(s)	345, 579, 599
Eco47I	GGWCC	3 cut(s)	332, 1421, 2009
Eco57I	CTGAAG	6 cut(s)	861, 1572, 1827, 1836, 1934, 2010
Eco88I	CYCGRG	3 cut(s)	1246, 1326, 1368
EcoNI	CCTNNNNNAGG	1 cut(s)	1744
EcoRI	GAATTC	1 cut(s)	706
EcoRII	CCWGG	4 cut(s)	788, 1494, 1745, 1899
EcoT22I	ATGCAT	3 cut(s)	1029, 1462, 1897
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 1925, 1957
FaqI	GGGAC	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	1142
FokI	GGATG	6 cut(s)	614, 913, 959, 1413, 1605, 1689
FspBI	CTAG	2 cut(s)	936, 2020
GlaI	GCGC	2 cut(s)	538, 1727
GsuI	CTGGAG	3 cut(s)	272, 576, 869
HaeIII	GGCC	2 cut(s)	48, 1011
HapII	CCGG	3 cut(s)	50, 866, 993
HgaI	GACGC	5 cut(s)	118, 300, 415, 580, 1769
HhaI	GCGC	2 cut(s)	539, 1728
Hin1I	GRCGYC	4 cut(s)	5, 110, 311, 1761
Hin6I	GCGC	2 cut(s)	537, 1726
HinP1I	GCGC	2 cut(s)	537, 1726
HincII	GTYRAC	3 cut(s)	531, 679, 1687
HindII	GTYRAC	3 cut(s)	531, 679, 1687
HinfI	GANTC	1 cut(s)	765
HpaII	CCGG	3 cut(s)	50, 866, 993
HphI	GGTGA	5 cut(s)	26, 70, 169, 442, 633
Hpy166II	GTNNAC	7 cut(s)	450, 531, 641, 679, 1143, 1687, 1873
Hpy188I	TCNGA	8 cut(s)	168, 262, 830, 1345, 1431, 1650, 1855, 1885
Hpy8I	GTNNAC	7 cut(s)	450, 531, 641, 679, 1143, 1687, 1873
Hpy99I	CGWCG	7 cut(s)	112, 143, 157, 217, 316, 596, 1763
HpyAV	CCTTC	7 cut(s)	154, 379, 627, 955, 1208, 1701, 1860
HpyCH4III	ACNGT	5 cut(s)	14, 157, 437, 1184, 1413
HpyCH4IV	ACGT	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	187, 490, 1457, 1541, 1643, 1732
HpyF3I	CTNAG	8 cut(s)	165, 234, 360, 480, 1041, 1191, 1647, 1833
HpySE526I	ACGT	1 cut(s)	527
Hsp92I	GRCGYC	4 cut(s)	5, 110, 311, 1761
HspAI	GCGC	2 cut(s)	537, 1726
Kpn2I	TCCGGA	1 cut(s)	865
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	6 cut(s)	74, 291, 557, 619, 1476, 1567
LweI	GCATC	3 cut(s)	267, 1447, 1627
MaeI	CTAG	2 cut(s)	936, 2020
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	6 cut(s)	14, 299, 431, 523, 908, 1354
MalI	GATC	7 cut(s)	101, 753, 945, 1149, 1242, 1826, 1866
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
MflI	RGATCY	5 cut(s)	99, 751, 943, 1824, 1864
MhlI	GDGCHC	4 cut(s)	233, 442, 666, 1473
MluCI	AATT	6 cut(s)	706, 853, 1164, 1792, 1995, 2014
MluI	ACGCGT	1 cut(s)	589
MmeI	TCCRAC	5 cut(s)	853, 1166, 1278, 1646, 1863
Mph1103I	ATGCAT	3 cut(s)	1029, 1462, 1897
MroI	TCCGGA	1 cut(s)	865
MroXI	GAANNNNTTC	2 cut(s)	637, 1995
MseI	TTAA	5 cut(s)	948, 1490, 1563, 1731, 1932
MslI	CAYNNNNRTG	2 cut(s)	653, 671
MspI	CCGG	3 cut(s)	50, 866, 993
MspR9I	CCNGG	6 cut(s)	50, 790, 994, 1496, 1747, 1901
Mva1269I	GAATGC	3 cut(s)	1279, 1792, 1897
MvaI	CCWGG	4 cut(s)	790, 1496, 1747, 1901
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	6 cut(s)	187, 490, 1457, 1541, 1643, 1732
NciI	CCSGG	2 cut(s)	50, 994
NdeII	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
NlaIV	GGNNCC	6 cut(s)	210, 559, 753, 982, 1569, 1866
NmeAIII	GCCGAG	3 cut(s)	128, 957, 1565
NmuCI	GTSAC	2 cut(s)	14, 431
NsiI	ATGCAT	3 cut(s)	1029, 1462, 1897
NspI	RCATGY	2 cut(s)	823, 1455
PaeR7I	CTCGAG	2 cut(s)	1246, 1326
PceI	AGGCCT	1 cut(s)	1011
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	3 cut(s)	212, 258, 524
PctI	GAATGC	3 cut(s)	1279, 1792, 1897
PdmI	GAANNNNTTC	2 cut(s)	637, 1995
PfeI	GAWTC	1 cut(s)	765
PflFI	GACNNNGTC	2 cut(s)	719, 834
PscI	ACATGT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	1610
Psp6I	CCWGG	4 cut(s)	788, 1494, 1745, 1899
PspGI	CCWGG	4 cut(s)	788, 1494, 1745, 1899
PspN4I	GGNNCC	6 cut(s)	210, 559, 753, 982, 1569, 1866
PspPI	GGNCC	4 cut(s)	47, 332, 1421, 2009
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	1124
PsuI	RGATCY	5 cut(s)	99, 751, 943, 1824, 1864
PsyI	GACNNNGTC	2 cut(s)	719, 834
RsaI	GTAC	4 cut(s)	862, 1123, 1391, 1511
RsaNI	GTAC	4 cut(s)	861, 1122, 1390, 1510
RseI	CAYNNNNRTG	2 cut(s)	653, 671
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	5 cut(s)	948, 1490, 1563, 1731, 1932
Sau3AI	GATC	7 cut(s)	99, 751, 943, 1147, 1240, 1824, 1864
Sau96I	GGNCC	4 cut(s)	47, 332, 1421, 2009
ScrFI	CCNGG	6 cut(s)	50, 790, 994, 1496, 1747, 1901
SduI	GDGCHC	4 cut(s)	233, 442, 666, 1473
SfaNI	GCATC	3 cut(s)	267, 1447, 1627
SfcI	CTRYAG	1 cut(s)	191
Sfr274I	CTCGAG	2 cut(s)	1246, 1326
SinI	GGWCC	3 cut(s)	332, 1421, 2009
SlaI	CTCGAG	2 cut(s)	1246, 1326
SmiMI	CAYNNNNRTG	2 cut(s)	653, 671
SmlI	CTYRAG	4 cut(s)	443, 1246, 1326, 1820
SmoI	CTYRAG	4 cut(s)	443, 1246, 1326, 1820
Sse9I	AATT	6 cut(s)	706, 853, 1164, 1792, 1995, 2014
SseBI	AGGCCT	1 cut(s)	1011
SsiI	CCGC	4 cut(s)	53, 56, 77, 775
SspMI	CTAG	2 cut(s)	936, 2020
StuI	AGGCCT	1 cut(s)	1011
StyD4I	CCNGG	6 cut(s)	48, 788, 992, 1494, 1745, 1899
TaaI	ACNGT	5 cut(s)	14, 157, 437, 1184, 1413
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	5 cut(s)	174, 1212, 1247, 1327, 1758
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	6 cut(s)	706, 853, 1164, 1792, 1995, 2014
TatI	WGTACW	1 cut(s)	1389
TauI	GCSGC	2 cut(s)	56, 80
TfiI	GAWTC	1 cut(s)	765
Tru1I	TTAA	5 cut(s)	948, 1490, 1563, 1731, 1932
Tru9I	TTAA	5 cut(s)	948, 1490, 1563, 1731, 1932
TscAI	CASTG	7 cut(s)	436, 442, 1187, 1542, 1696, 1837, 1875
TseFI	GTSAC	2 cut(s)	14, 431
Tsp45I	GTSAC	2 cut(s)	14, 431
TspDTI	ATGAA	6 cut(s)	173, 661, 799, 1016, 1191, 1507
TspGWI	ACGGA	3 cut(s)	33, 87, 135
TspRI	CASTG	7 cut(s)	436, 442, 1187, 1542, 1696, 1837, 1875
Tth111I	GACNNNGTC	2 cut(s)	719, 834
VpaK11BI	GGWCC	3 cut(s)	332, 1421, 2009
XagI	CCTNNNNNAGG	1 cut(s)	1744
XapI	RAATTY	4 cut(s)	706, 853, 1995, 2014
XceI	RCATGY	2 cut(s)	823, 1455
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1520, 1875
XhoI	CTCGAG	2 cut(s)	1246, 1326
XmiI	GTMKAC	1 cut(s)	1142
XmnI	GAANNNNTTC	2 cut(s)	637, 1995
XspI	CTAG	2 cut(s)	936, 2020
Zsp2I	ATGCAT	3 cut(s)	1029, 1462, 1897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.