RLG00000026657

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000239
Physical Location & Seq
Reverse (-)
4653446 .. 4661844
8399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026657

Sequence Viewer

Length: 639 bp
ATGGTCTTCAACATTATTATTGCCGGAAGAGACTCGACAGGTACGACTCTCTCATGGTTTCTTTGTATGATGTGCAAGCATCTTCATATACAAGAAAAGGTTGCCCAGGAAGTCAGAGAAGCTATAAATCTGAAAGATGTTTCAAATGTTGATGAGCTTGCTACCAGCATTAATCAAGAATCCGTTAACAAAATGCAATATCTCCATGCAGTTTTGACTGAGACACTCAGACTCTATCCTCCTCTTCCTATGAATGCGAAGATGTGTTTATCCGATGATATCTGGCCAGATGGATTTAGTGTCAAAAAAGGAGATATGGTGGTATACCAGCCTTATGCAATGGGCAGGATGAAATTTCTATGGGGTGATGATGCAGAAGAGTTTCGGCCAGAGAGATGGCTCAATGAACACGGCCATTTCAAGGATGAAAGCCCTTTCAAATTCACAGCCTTCCAGGCCGGTCCAAGAATTTGTCTTGGAAAGGAACATGCTTATATGCAGATGAAGATCTTTTCTGCTGGGCTTCTAGGTAGCTATATATTCAAGCTAGCTGATGAGAAAAAAGTGGTTAACTACAAGACCATGGTCAGTCTCCAAATTTATGGAGGACTTTATGTGCATGCCCACCCAAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

213

Amino Acids

24.39

Weight (kDa)

7.08

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 193 5.3e-47 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AcoI YGGCCR 3 cut(s) 284, 386, 412
AcsI RAATTY 4 cut(s) 353, 440, 468, 597
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 5 cut(s) 10, 144, 421, 439, 544
AjnI CCWGG 2 cut(s) 105, 453
AluBI AGCT 5 cut(s) 122, 157, 534, 547, 551
AluI AGCT 5 cut(s) 122, 157, 534, 547, 551
Alw26I GTCTC 3 cut(s) 24, 215, 596
AoxI GGCC 4 cut(s) 284, 386, 412, 456
ApoI RAATTY 4 cut(s) 353, 440, 468, 597
AseI ATTAAT 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 377
AsuNHI GCTAGC 1 cut(s) 547
AvaII GGWCC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 286
BccI CCATC 2 cut(s) 284, 390
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 2 cut(s) 107, 455
BcoDI GTCTC 3 cut(s) 24, 215, 596
BfaI CTAG 2 cut(s) 527, 548
BglI GCCNNNNNGGC 1 cut(s) 455
BglII AGATCT 1 cut(s) 507
Bme1390I CCNGG 2 cut(s) 107, 455
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 2 cut(s) 107, 455
BmsI GCATC 2 cut(s) 88, 361
BmtI GCTAGC 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 506
BsaJI CCNNGG 2 cut(s) 105, 582
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 506
BseBI CCWGG 2 cut(s) 107, 455
BseDI CCNNGG 2 cut(s) 105, 582
BseGI GGATG 2 cut(s) 354, 430
BseJI GATNNNNATC 1 cut(s) 506
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 210, 241
BseRI GAGGAG 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 518
BshFI GGCC 4 cut(s) 286, 388, 414, 458
BsiSI CCGG 2 cut(s) 24, 459
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 24, 215, 596
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 4 cut(s) 286, 388, 414, 458
Bsp143I GATC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 582
BspANI GGCC 4 cut(s) 286, 388, 414, 458
BspCNI CTCAG 2 cut(s) 211, 240
BspOI GCTAGC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 105, 582
BssMI GATC 1 cut(s) 507
BssNAI GTATAC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 582
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 107, 455
Bst6I CTCTTC 3 cut(s) 22, 249, 372
BstC8I GCNNGC 4 cut(s) 77, 159, 549, 621
BstDEI CTNAG 2 cut(s) 219, 227
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 2 cut(s) 354, 430
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 3 cut(s) 24, 215, 596
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 2 cut(s) 107, 455
BstNSI RCATGY 2 cut(s) 491, 623
BstPAI GACNNNNGTC 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 105, 453
BstX2I RGATCY 1 cut(s) 507
BstXI CCANNNNNNTGG 2 cut(s) 396, 602
BstYI RGATCY 1 cut(s) 507
BstZ17I GTATAC 1 cut(s) 325
BsuRI GGCC 4 cut(s) 286, 388, 414, 458
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 2 cut(s) 354, 430
Cac8I GCNNGC 4 cut(s) 77, 159, 549, 621
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 42
CviAII CATG 5 cut(s) 54, 206, 488, 583, 620
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 219, 227
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
EaeI YGGCCR 3 cut(s) 284, 386, 412
Eam1104I CTCTTC 3 cut(s) 22, 249, 372
EarI CTCTTC 3 cut(s) 22, 249, 372
Eco130I CCWWGG 1 cut(s) 582
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 105, 453
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 5 cut(s) 57, 209, 491, 586, 623
FatI CATG 5 cut(s) 53, 205, 487, 582, 619
FblI GTMKAC 1 cut(s) 324
FokI GGATG 2 cut(s) 361, 437
FspBI CTAG 2 cut(s) 527, 548
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 4 cut(s) 286, 388, 414, 458
HapII CCGG 2 cut(s) 24, 459
Hin1II CATG 5 cut(s) 57, 209, 491, 586, 623
HincII GTYRAC 2 cut(s) 187, 571
HindII GTYRAC 2 cut(s) 187, 571
HinfI GANTC 4 cut(s) 32, 46, 179, 231
HpaI GTTAAC 2 cut(s) 187, 571
HpaII CCGG 2 cut(s) 24, 459
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 187, 325, 571
Hpy188I TCNGA 4 cut(s) 116, 132, 230, 274
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 3 cut(s) 187, 325, 571
HpyAV CCTTC 1 cut(s) 460
HpyCH4V TGCA 7 cut(s) 75, 196, 209, 338, 374, 499, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 219, 227
Hsp92II CATG 5 cut(s) 57, 209, 491, 586, 623
KspAI GTTAAC 2 cut(s) 187, 571
Kzo9I GATC 1 cut(s) 507
LweI GCATC 2 cut(s) 88, 361
MaeI CTAG 2 cut(s) 527, 548
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 6 cut(s) 39, 74, 236, 271, 389, 517
MflI RGATCY 1 cut(s) 507
MlsI TGGCCA 1 cut(s) 286
MluCI AATT 4 cut(s) 353, 440, 468, 597
MluNI TGGCCA 1 cut(s) 286
MlyI GAGTC 3 cut(s) 26, 40, 225
MnlI CCTC 3 cut(s) 249, 252, 599
Mox20I TGGCCA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 286
MseI TTAA 3 cut(s) 171, 186, 570
Msp20I TGGCCA 1 cut(s) 286
MspI CCGG 2 cut(s) 24, 459
MspR9I CCNGG 2 cut(s) 107, 455
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 2 cut(s) 107, 455
MwoI GCNNNNNNNGC 1 cut(s) 455
NcoI CCATGG 1 cut(s) 582
NdeII GATC 1 cut(s) 507
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 5 cut(s) 57, 209, 491, 586, 623
NspI RCATGY 2 cut(s) 491, 623
PaeI GCATGC 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 179
PleI GAGTC 3 cut(s) 26, 40, 225
PpsI GAGTC 3 cut(s) 26, 40, 225
PshAI GACNNNNGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 105, 453
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 2 cut(s) 105, 453
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 171, 186, 570
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 461
SchI GAGTC 3 cut(s) 26, 40, 225
ScrFI CCNGG 2 cut(s) 107, 455
SetI ASST 8 cut(s) 43, 102, 124, 159, 532, 536, 549, 553
SfaNI GCATC 2 cut(s) 88, 361
SinI GGWCC 1 cut(s) 461
SphI GCATGC 1 cut(s) 623
Sse9I AATT 4 cut(s) 353, 440, 468, 597
SspMI CTAG 2 cut(s) 527, 548
StyD4I CCNGG 2 cut(s) 105, 453
StyI CCWWGG 1 cut(s) 582
TaqI TCGA 1 cut(s) 35
TasI AATT 4 cut(s) 353, 440, 468, 597
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 171, 186, 570
Tru9I TTAA 3 cut(s) 171, 186, 570
TspDTI ATGAA 6 cut(s) 74, 266, 365, 420, 441, 518
TspGWI ACGGA 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 4 cut(s) 353, 440, 468, 597
XceI RCATGY 2 cut(s) 491, 623
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 2 cut(s) 527, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.