RchiOBHm_Chr1g0375531

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000239
Physical Location & Seq
Forward (+)
62910224 .. 62912296
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59924

Sequence Viewer

Length: 414 bp
ATGATGTGCAAGCATCTTGATGTACAAGAAAAGATTGCACAGGAAGTTAGAGAAGTAACAGGCCTAAATAATAATTCAAGCGCTGATGAAGTTGCAGCCAACCTTACTGAAGAAGCCCTTAACAAAATGCAATATCTCCATGCAGCTTTGAATGAGACTCTTAGACTCTATCCTACAGTTTCAATGAATGCGAGGATTTGTTTCTCTGATGATACCTGGCTAGATGGAGATAGTGTCAAAAAAGGGCAACTAGTGATATACCAACCTTATTCAATGGGCCGGATGAAGTTTATATGGGGTGATGATGCAGAAGAGTTTCGACCAGAGAGATGGATTGATGAAAATGGCAATTTCCAGGAAGAAATCCCTTTCAAATTCTTAGCCTTCAATGCCAGTCCAGGAATTTGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

4.63

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 137 1.9e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 374, 402
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 82
AgsI TTSAA 6 cut(s) 78, 151, 183, 273, 373, 388
AhlI ACTAGT 1 cut(s) 250
AjnI CCWGG 3 cut(s) 215, 354, 397
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 82
AoxI GGCC 2 cut(s) 61, 277
ApeKI GCWGC 2 cut(s) 95, 143
ApoI RAATTY 2 cut(s) 374, 402
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 311
BbvI GCAGC 2 cut(s) 107, 155
BccI CCATC 2 cut(s) 218, 324
BciT130I CCWGG 3 cut(s) 217, 356, 399
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 2 cut(s) 221, 251
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 2 cut(s) 96, 144
BlsI GCNGC 2 cut(s) 97, 145
Bme1390I CCNGG 3 cut(s) 217, 356, 399
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 3 cut(s) 217, 356, 399
BmsI GCATC 2 cut(s) 22, 295
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse1I ACTGG 1 cut(s) 393
BseBI CCWGG 3 cut(s) 217, 356, 399
BseGI GGATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 107, 155
BshFI GGCC 2 cut(s) 63, 279
BsiSI CCGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 2 cut(s) 63, 279
Bsp1407I TGTACA 1 cut(s) 22
BspANI GGCC 2 cut(s) 63, 279
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 393
Bst2UI CCWGG 3 cut(s) 217, 356, 399
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 161, 379
BstF5I GGATG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 3 cut(s) 217, 356, 399
BstSCI CCNGG 3 cut(s) 215, 354, 397
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 107, 155
BstXI CCANNNNNNTGG 1 cut(s) 330
BsuRI GGCC 2 cut(s) 63, 279
BtsCI GGATG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 23
CviAII CATG 1 cut(s) 140
CviJI RGCY 7 cut(s) 63, 98, 116, 146, 220, 279, 383
CviKI_1 RGCY 7 cut(s) 63, 98, 116, 146, 220, 279, 383
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 161, 379
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 63
Eco47III AGCGCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 215, 354, 397
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 141, 259, 293, 295
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 96, 144
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 96, 144
FspBI CTAG 2 cut(s) 221, 251
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 96, 144
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 2 cut(s) 63, 279
HapII CCGG 1 cut(s) 280
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 2 cut(s) 157, 165
HpaII CCGG 1 cut(s) 280
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 208, 413
Hpy188III TCNNGA 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 6 cut(s) 9, 38, 95, 130, 143, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 161, 379
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 107, 155
LweI GCATC 2 cut(s) 22, 295
MaeI CTAG 2 cut(s) 221, 251
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 3 cut(s) 122, 323, 371
MluCI AATT 4 cut(s) 73, 349, 374, 402
MlyI GAGTC 2 cut(s) 151, 159
MnlI CCTC 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 3 cut(s) 217, 356, 399
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 3 cut(s) 217, 356, 399
MwoI GCNNNNNNNGC 1 cut(s) 389
NlaIII CATG 1 cut(s) 143
PceI AGGCCT 1 cut(s) 63
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 315
PfoI TCCNGGA 2 cut(s) 354, 397
PkrI GCNGC 2 cut(s) 97, 145
PleI GAGTC 2 cut(s) 151, 159
PpsI GAGTC 2 cut(s) 151, 159
Psp6I CCWGG 3 cut(s) 215, 354, 397
PspGI CCWGG 3 cut(s) 215, 354, 397
PspPI GGNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 96, 144
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 151, 159
ScrFI CCNGG 3 cut(s) 217, 356, 399
SetI ASST 4 cut(s) 105, 148, 218, 268
SfaNI GCATC 2 cut(s) 22, 295
SfcI CTRYAG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 250
Sse9I AATT 4 cut(s) 73, 349, 374, 402
SseBI AGGCCT 1 cut(s) 63
SspMI CTAG 2 cut(s) 221, 251
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 3 cut(s) 215, 354, 397
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 319
TasI AATT 4 cut(s) 73, 349, 374, 402
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 2 cut(s) 95, 143
TspDTI ATGAA 4 cut(s) 102, 200, 299, 354
XapI RAATTY 2 cut(s) 374, 402
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 2 cut(s) 221, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.