Rorug01G0273400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000239
Physical Location & Seq
Forward (+)
38593022 .. 38593830
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0273400.1

Sequence Viewer

Length: 600 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCGACGTGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACATCCGAGGAAGGTAGCGTATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

199

Amino Acids

21.7

Weight (kDa)

4.86

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 584
AciI CCGC 1 cut(s) 534
AclI AACGTT 1 cut(s) 555
AclWI GGATC 3 cut(s) 141, 333, 346
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 2 cut(s) 91, 328
AfiI CCNNNNNNNGG 1 cut(s) 455
AgsI TTSAA 1 cut(s) 431
AhlI ACTAGT 2 cut(s) 314, 365
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 2 cut(s) 92, 420
AluBI AGCT 4 cut(s) 53, 199, 568, 590
AluI AGCT 4 cut(s) 53, 199, 568, 590
Alw21I GWGCWC 2 cut(s) 456, 570
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 452
AlwI GGATC 3 cut(s) 141, 333, 346
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 584
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 3 cut(s) 50, 293, 590
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 360
BaeGI GKGCMC 3 cut(s) 164, 306, 456
BamHI GGATCC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 262, 570
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 456, 570
BbvI GCAGC 3 cut(s) 62, 280, 577
BccI CCATC 2 cut(s) 374, 589
BceAI ACGGC 2 cut(s) 72, 472
BciT130I CCWGG 2 cut(s) 94, 422
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 365
BfaI CTAG 3 cut(s) 315, 366, 598
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 591
BlpI GCTNAGC 1 cut(s) 569
BlsI GCNGC 3 cut(s) 52, 295, 592
Bme1390I CCNGG 2 cut(s) 94, 422
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 4 cut(s) 6, 245, 340, 361
BmrFI CCNGG 2 cut(s) 94, 422
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 529
Bpu1102I GCTNAGC 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 113, 584
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 306, 492
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 205, 299
BseAI TCCGGA 1 cut(s) 584
BseBI CCWGG 2 cut(s) 94, 422
BseDI CCNNGG 2 cut(s) 306, 492
BseGI GGATG 3 cut(s) 392, 488, 581
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 2 cut(s) 543, 583
BseNI ACTGG 2 cut(s) 205, 299
BseRI GAGGAG 3 cut(s) 44, 423, 426
BseSI GKGCMC 3 cut(s) 164, 306, 456
BseXI GCAGC 3 cut(s) 62, 280, 577
BsiHKAI GWGCWC 2 cut(s) 456, 570
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 262, 306, 456, 570
Bsp13I TCCGGA 1 cut(s) 584
Bsp143I GATC 4 cut(s) 133, 186, 338, 415
Bsp1720I GCTNAGC 1 cut(s) 569
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 534
BspCNI CTCAG 2 cut(s) 542, 582
BspEI TCCGGA 1 cut(s) 584
BspLI GGNNCC 4 cut(s) 6, 245, 340, 361
BspPI GGATC 3 cut(s) 141, 333, 346
BsrI ACTGG 2 cut(s) 205, 299
BssECI CCNNGG 2 cut(s) 306, 492
BssMI GATC 4 cut(s) 133, 186, 338, 415
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 422
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 465
BstDEI CTNAG 2 cut(s) 529, 569
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 3 cut(s) 392, 488, 581
BstKTI GATC 4 cut(s) 136, 189, 341, 418
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 133, 186, 338, 415
BstNI CCWGG 2 cut(s) 94, 422
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 92, 420
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 456
BstV1I GCAGC 3 cut(s) 62, 280, 577
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 3 cut(s) 133, 186, 338
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 338
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 3 cut(s) 392, 488, 581
BtsIMutI CAGTG 2 cut(s) 306, 550
Cfr13I GGNCC 1 cut(s) 360
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 1 cut(s) 307
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 529, 569
DpnI GATC 4 cut(s) 135, 188, 340, 417
DpnII GATC 4 cut(s) 133, 186, 338, 415
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 570
Eco47I GGWCC 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 92, 420
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 570
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 310
FaiI YATR 3 cut(s) 210, 216, 308
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 591
FokI GGATG 3 cut(s) 379, 475, 568
FriOI GRGCYC 2 cut(s) 262, 570
Fsp4HI GCNGC 3 cut(s) 51, 294, 591
FspBI CTAG 3 cut(s) 315, 366, 598
GluI GCNGC 3 cut(s) 51, 294, 591
GsuI CTGGAG 3 cut(s) 93, 179, 282
HapII CCGG 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 1 cut(s) 310
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 585
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 363, 454
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 563, 585
Hpy8I GTNNAC 2 cut(s) 363, 454
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 5 cut(s) 69, 144, 252, 465, 555
HpyCH4V TGCA 2 cut(s) 400, 454
HpyF3I CTNAG 2 cut(s) 529, 569
HpySE526I ACGT 5 cut(s) 69, 144, 252, 465, 555
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 1 cut(s) 310
Kpn2I TCCGGA 1 cut(s) 584
Kzo9I GATC 4 cut(s) 133, 186, 338, 415
LmnI GCTCC 2 cut(s) 301, 587
Lsp1109I GCAGC 3 cut(s) 62, 280, 577
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 366, 598
MaeII ACGT 5 cut(s) 69, 144, 252, 465, 555
MaeIII GTNAC 3 cut(s) 473, 512, 536
MalI GATC 4 cut(s) 135, 188, 340, 417
MboI GATC 4 cut(s) 133, 186, 338, 415
MboII GAAGA 2 cut(s) 428, 493
MflI RGATCY 3 cut(s) 133, 186, 338
MhlI GDGCHC 5 cut(s) 164, 262, 306, 456, 570
MluCI AATT 1 cut(s) 352
MroI TCCGGA 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 94, 422
MvaI CCWGG 2 cut(s) 94, 422
NcoI CCATGG 1 cut(s) 306
NdeII GATC 4 cut(s) 133, 186, 338, 415
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 4 cut(s) 6, 245, 340, 361
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 592
Psp124BI GAGCTC 1 cut(s) 570
Psp1406I AACGTT 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 92, 420
PspEI GGTNACC 1 cut(s) 473
PspGI CCWGG 2 cut(s) 92, 420
PspN4I GGNNCC 4 cut(s) 6, 245, 340, 361
PspPI GGNCC 1 cut(s) 360
PsuI RGATCY 3 cut(s) 133, 186, 338
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 591
Sau3AI GATC 4 cut(s) 133, 186, 338, 415
Sau96I GGNCC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 94, 422
SduI GDGCHC 5 cut(s) 164, 262, 306, 456, 570
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 563
SmoI CTYRAG 3 cut(s) 128, 261, 563
SpeI ACTAGT 2 cut(s) 314, 365
Sse9I AATT 1 cut(s) 352
SsiI CCGC 1 cut(s) 534
SspMI CTAG 3 cut(s) 315, 366, 598
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 92, 420
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 5 cut(s) 72, 147, 255, 468, 558
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 352
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 306, 550
TseI GCWGC 3 cut(s) 50, 293, 590
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 306, 550
VneI GTGCAC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 360
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 366, 598
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.