Rorug06G0412800

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000239
Physical Location & Seq
Forward (+)
55407511 .. 55410191
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0412800.1

Sequence Viewer

Length: 390 bp
ATGGGTAAGAAGAAACCTCAGAAAACGAAGGAGCTTTCAGTAGCAATAGCAGAAGCTTCATCAACTGGAGATGAAGCTCAGCAGCAACAATCACAGCCTCAGCCTCAGACCCCAAGAAAGCGAGGAAGACCTCGAAAGATCATTGAAGAGCAATCATCAACAAAAATAGAAGAAGCTGCTGCAGCTCAAGATGTTGAAGCAAGTCAGTCCAAAAAAGCTAAAGCCAGTGAGGAAGAGGAAGAAGATAAGCAAGAACAACAAGAAGAGCAGCAGCAAAAGATTAAAGAAGAAGGGCCATCATCGACAAAAGCTAAAGAGAGTGAGTCAAGGAGGGAGCCTTCGAGAAGTAGAGCTAGGAGGAAAAGCAAACCCAGAAAGAGTAGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

9.46

Isoelectric Point (pI)

110.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 146, 197
AluBI AGCT 8 cut(s) 34, 56, 77, 176, 185, 218, 311, 353
AluI AGCT 8 cut(s) 34, 56, 77, 176, 185, 218, 311, 353
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 6 cut(s) 82, 176, 179, 182, 268, 271
AspS9I GGNCC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
BccI CCATC 1 cut(s) 304
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 6 cut(s) 84, 178, 181, 184, 270, 273
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 70, 225
BseMII CTCAG 4 cut(s) 32, 92, 113, 119
BseNI ACTGG 2 cut(s) 70, 225
BseXI GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
BshFI GGCC 1 cut(s) 295
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 138
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 4 cut(s) 31, 91, 112, 118
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 184
BspQI GCTCTTC 2 cut(s) 141, 258
BsrI ACTGG 2 cut(s) 70, 225
BssMI GATC 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 141, 228, 258
BstDEI CTNAG 4 cut(s) 18, 78, 99, 105
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
BstV2I GAAGAC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 18, 78, 99, 105
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 141, 228, 258
EarI CTCTTC 3 cut(s) 141, 228, 258
Fnu4HI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
Fsp4HI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
FspBI CTAG 1 cut(s) 354
GluI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 21, 108
Hpy188III TCNNGA 2 cut(s) 188, 342
HpyAV CCTTC 3 cut(s) 22, 284, 348
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 4 cut(s) 18, 78, 99, 105
Kzo9I GATC 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 141, 258
LmnI GCTCC 2 cut(s) 31, 334
LpnPI CCDG 3 cut(s) 51, 238, 385
Lsp1109I GCAGC 6 cut(s) 94, 163, 166, 194, 280, 283
MaeI CTAG 1 cut(s) 354
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 9 cut(s) 22, 138, 158, 182, 245, 251, 254, 275, 299
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 9 cut(s) 27, 108, 114, 116, 141, 223, 229, 324, 351
MseI TTAA 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 336
PciSI GCTCTTC 2 cut(s) 141, 258
PkrI GCNGC 6 cut(s) 84, 178, 181, 184, 270, 273
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 184
SapI GCTCTTC 2 cut(s) 141, 258
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 6 cut(s) 83, 177, 180, 183, 269, 272
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SspMI CTAG 1 cut(s) 354
TaqI TCGA 3 cut(s) 133, 302, 341
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 232
TseI GCWGC 6 cut(s) 82, 176, 179, 182, 268, 271
TspDTI ATGAA 2 cut(s) 48, 87
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.