Rorug01G0273300

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
38575386 .. 38578677
3292 bp
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UTR
Exon/CDS
Intron
Rorug01G0273300.1

Sequence Viewer

Length: 267 bp
ATGAGGCGGGGGAACAAAATTTGTGTTGCCTCCAACACTTACTCAAGAACTAGAAAGAGAACGGGAAGCTCTCAAGGCCTCAATCATCTTCTCCAGCAATTGCAACCAGAAACCATCATTGTTTCAGTCACTGGGGTCTTTACCGAGCTTATTCAGCAGATGCAAGTAAAAGGTGTGCAGATTGAGGAGTTGTATTCATTGGACATTGATTCTCTGAACAATCTGAGAAAATTCAGAAGCCGAGGAAGAAATTTTTACAAGAGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.15

Weight (kDa)

10.42

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AcsI RAATTY 3 cut(s) 18, 230, 250
AluBI AGCT 2 cut(s) 69, 148
AluI AGCT 2 cut(s) 69, 148
AlwNI CAGNNNCTG 1 cut(s) 131
AoxI GGCC 1 cut(s) 76
ApoI RAATTY 3 cut(s) 18, 230, 250
BccI CCATC 1 cut(s) 122
BfaI CTAG 1 cut(s) 51
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 28, 57
BsaJI CCNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 78
BsnI GGCC 1 cut(s) 78
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 75, 154
BsuRI GGCC 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 131
CviJI RGCY 4 cut(s) 69, 78, 148, 240
CviKI_1 RGCY 4 cut(s) 69, 78, 148, 240
DdeI CTNAG 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 78
FspBI CTAG 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 78
HinfI GANTC 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 216, 225, 236
Hpy188III TCNNGA 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 103, 163, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 154
HpyF3I CTNAG 1 cut(s) 224
LpnPI CCDG 3 cut(s) 107, 117, 120
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 2 cut(s) 80, 258
MfeI CAATTG 1 cut(s) 98
MluCI AATT 4 cut(s) 18, 98, 230, 250
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 4 cut(s) 40, 89, 178, 236
MunI CAATTG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 75, 154
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 127
PceI AGGCCT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 131
SetI ASST 3 cut(s) 71, 150, 175
SfaNI GCATC 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 43, 72
SmoI CTYRAG 2 cut(s) 43, 72
Sse9I AATT 4 cut(s) 18, 98, 230, 250
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 1 cut(s) 7
SspMI CTAG 1 cut(s) 51
StuI AGGCCT 1 cut(s) 78
TasI AATT 4 cut(s) 18, 98, 230, 250
TfiI GAWTC 1 cut(s) 209
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 1 cut(s) 136
XapI RAATTY 3 cut(s) 18, 230, 250
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.