Rmu_sc0001644.1_g000013

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001644.1
OG0000239
Physical Location & Seq
Forward (+)
77959 .. 80819
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001644.1_g000013.1.cds

Sequence Viewer

Length: 735 bp
atgttgttccgcagggatcgcggcggtgccggtcatggaggcgtgcggcggagggagtttcgcttgactgttgtgaacgacgggagagcagatggtttgggtggactttctgtggatcttgacttgttcaaatatgtagtttacacggcagatcctgcgaatgttgaatacatgctcaagacgaactttgcaaactatggcaagggagagtacctgcacggcctcatatcagatgttgtgggcaacgggatcttctctgtggatgggggaaaatggcggcatcagaggaagacatcaagctctcaattctcaacaaaagtacttagagagtttagcagtgaaattttcaagaccaatgcagtaaaggttgctgacataattcatgaagctgcaacctgcaacaaatcaatagagatgcaagatttgtttatgaaatcaaccttggattcaattgtcaaaattctacttggtttcgatctaggcaccatgtctggaacaaacaatgaagaaagtatccggttttccaatgcttttgatgatgcaaacgcatgtaccctttatcgtcttggtgatatcttttggaagatcagacggttcttgaacattggtatggaagcagtgctaagagaaaatgtgaaggtggtggatcaatttatatacaaattaatcaacacaaagattcaaacactccataatttagaagatgatgagctacctgtgagttaccttccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

244

Amino Acids

27.52

Weight (kDa)

6.97

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 222, 404
AccB1I GGYRCC 2 cut(s) 26, 482
AccII CGCG 1 cut(s) 21
AciI CCGC 6 cut(s) 10, 21, 24, 46, 49, 277
AclWI GGATC 5 cut(s) 24, 123, 146, 257, 654
AcsI RAATTY 2 cut(s) 342, 459
AfaI GTAC 3 cut(s) 212, 321, 553
AgsI TTSAA 6 cut(s) 130, 167, 349, 450, 601, 683
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 3 cut(s) 300, 389, 712
AluI AGCT 3 cut(s) 300, 389, 712
AlwI GGATC 5 cut(s) 24, 123, 146, 257, 654
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 342, 459
AseI ATTAAT 1 cut(s) 665
AsuHPI GGTGA 1 cut(s) 581
BaeI ACNNNNGTAYC 2 cut(s) 535, 568
BanI GGYRCC 2 cut(s) 26, 482
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 376
BccI CCATC 2 cut(s) 86, 257
BceAI ACGGC 2 cut(s) 162, 235
BciVI GTATCC 1 cut(s) 524
BfaI CTAG 1 cut(s) 479
BfuAI ACCTGC 2 cut(s) 222, 404
BfuI GTATCC 1 cut(s) 524
BisI GCNGC 4 cut(s) 22, 47, 278, 390
BlsI GCNGC 4 cut(s) 23, 48, 279, 391
BmcAI AGTACT 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 28, 484
BmsI GCATC 3 cut(s) 289, 405, 529
BpiI GAAGAC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 441
BsaWI WCCGGW 1 cut(s) 516
Bse118I RCCGGY 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 2 cut(s) 26, 482
BsiSI CCGG 2 cut(s) 30, 517
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
BspACI CCGC 6 cut(s) 10, 21, 24, 46, 49, 277
BspANI GGCC 1 cut(s) 222
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 28, 484
BspMI ACCTGC 2 cut(s) 222, 404
BspPI GGATC 5 cut(s) 24, 123, 146, 257, 654
BspT107I GGYRCC 2 cut(s) 26, 482
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
BssT1I CCWWGG 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 70, 594
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 323, 623
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 7 cut(s) 19, 118, 154, 252, 478, 588, 649
BstMBI GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
BstMWI GCNNNNNNNGC 2 cut(s) 18, 155
BstNSI RCATGY 2 cut(s) 175, 552
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 3 cut(s) 115, 151, 249
BstYI RGATCY 3 cut(s) 115, 151, 249
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 2 cut(s) 343, 624
BtsIMutI CAGTG 2 cut(s) 343, 624
BveI ACCTGC 2 cut(s) 222, 404
Cac8I GCNNGC 1 cut(s) 44
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 29
Csp6I GTAC 3 cut(s) 211, 320, 552
CviAII CATG 5 cut(s) 35, 172, 383, 487, 549
CviJI RGCY 4 cut(s) 222, 300, 389, 712
CviKI_1 RGCY 4 cut(s) 222, 300, 389, 712
CviQI GTAC 3 cut(s) 211, 320, 552
DdeI CTNAG 2 cut(s) 323, 623
DpnI GATC 7 cut(s) 18, 117, 153, 251, 477, 587, 648
DpnII GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 441
Eco32I GATATC 1 cut(s) 574
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 5 cut(s) 38, 175, 386, 490, 552
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 5 cut(s) 34, 171, 382, 486, 548
Fnu4HI GCNGC 4 cut(s) 22, 47, 278, 390
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 22, 47, 278, 390
FspBI CTAG 1 cut(s) 479
GluI GCNGC 4 cut(s) 22, 47, 278, 390
HaeIII GGCC 1 cut(s) 222
HapII CCGG 2 cut(s) 30, 517
Hin1II CATG 5 cut(s) 38, 175, 386, 490, 552
HinfI GANTC 2 cut(s) 446, 679
HpaII CCGG 2 cut(s) 30, 517
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 76, 104, 142
Hpy188I TCNGA 3 cut(s) 232, 285, 590
Hpy188III TCNNGA 6 cut(s) 119, 178, 349, 383, 492, 598
Hpy8I GTNNAC 3 cut(s) 76, 104, 142
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 631
HpyCH4III ACNGT 2 cut(s) 70, 594
HpyCH4V TGCA 7 cut(s) 191, 217, 359, 392, 399, 418, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 155
HpyF3I CTNAG 2 cut(s) 323, 623
Hsp92II CATG 5 cut(s) 38, 175, 386, 490, 552
Kzo9I GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
LpnPI CCDG 7 cut(s) 43, 168, 227, 409, 477, 530, 729
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 3 cut(s) 289, 405, 529
MaeI CTAG 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 722
MalI GATC 7 cut(s) 18, 117, 153, 251, 477, 587, 648
MboI GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
MboII GAAGA 5 cut(s) 244, 301, 518, 595, 713
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 3 cut(s) 115, 151, 249
MluCI AATT 8 cut(s) 305, 342, 378, 450, 459, 650, 662, 694
MnlI CCTC 4 cut(s) 32, 45, 233, 279
MseI TTAA 2 cut(s) 665, 733
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 2 cut(s) 30, 517
MunI CAATTG 1 cut(s) 450
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 18, 155
NdeII GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
NlaIII CATG 5 cut(s) 38, 175, 386, 490, 552
NlaIV GGNNCC 2 cut(s) 28, 484
NspI RCATGY 2 cut(s) 175, 552
PagI TCATGA 1 cut(s) 382
PfeI GAWTC 2 cut(s) 446, 679
PkrI GCNGC 4 cut(s) 23, 48, 279, 391
PshBI ATTAAT 1 cut(s) 665
PspN4I GGNNCC 2 cut(s) 28, 484
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 3 cut(s) 115, 151, 249
RsaI GTAC 3 cut(s) 212, 321, 553
RsaNI GTAC 3 cut(s) 211, 320, 552
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 2 cut(s) 665, 733
SatI GCNGC 4 cut(s) 22, 47, 278, 390
Sau3AI GATC 7 cut(s) 16, 115, 151, 249, 475, 585, 646
ScaI AGTACT 1 cut(s) 321
SfaNI GCATC 3 cut(s) 289, 405, 529
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 8 cut(s) 305, 342, 378, 450, 459, 650, 662, 694
SsiI CCGC 6 cut(s) 10, 21, 24, 46, 49, 277
SspMI CTAG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 2 cut(s) 70, 594
TaqI TCGA 1 cut(s) 474
TasI AATT 8 cut(s) 305, 342, 378, 450, 459, 650, 662, 694
TatI WGTACW 1 cut(s) 319
TauI GCSGC 3 cut(s) 24, 49, 280
TfiI GAWTC 2 cut(s) 446, 679
Tru1I TTAA 2 cut(s) 665, 733
Tru9I TTAA 2 cut(s) 665, 733
TscAI CASTG 2 cut(s) 343, 624
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 371, 399, 446, 519
TspRI CASTG 2 cut(s) 343, 624
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 2 cut(s) 342, 459
XceI RCATGY 2 cut(s) 175, 552
XspI CTAG 1 cut(s) 479
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.