Rorug01G0391600

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000239
Physical Location & Seq
Forward (+)
50209394 .. 50213677
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0391600.1

Sequence Viewer

Length: 1881 bp
ATGTCCCATTCTCATCGATCATCATCGGAATATCCAAAATCCAAAACCAAAGAGAGCAAGACTTTCGGCTCATCATCGGAGAAAAAGATCAAGAAAATGGGCGACGGGAATAACACCAACAACTACAAGATGTTCAAGTTCTTCAACCGCAAGTTCAAGATCAGCGAGTTGAAGCCACCTCCCGACGTCAAGGACATCTTCTCCAAGTTCGCCGCCGGCGGGGAACTCATGTCCCCCGACCAGTTCCGTACGTTCTTGATCGAACACCAGGCCGAGAAATCCGTTTCTTTGGCCGACGCCAAGCGCATCCTACATGAGTTCTCGCTCCGACGACAGCATCTTACGGACCCGAAACACAAGAAAGACAAGAAACAGTCCAAAGAGAACAAAACTGCCGCGCCGGCCCACCAAACACATGAGCACGGCCTCACTTTGGACGAATTCTTCAATTTCCTATTCGAGGAAGAATTCAACGGCCCCATCAAACGAGAGGTACACCATGATATGACTGCTCCGTTGTCGCATTATTTCATATATACAGGGCACAATTCGTACCTTACTGGGAATCAACTCAGCAGTGACTGTAGTGATGTGCCAATCATTAAGGCTTTGGAGAGAGGGGTCAAAGTAATTGAGCTTGATTTATGGCCAACGTCTTCGAAACAGGATGTTCAAGTTTATCATGGAAGGACCTTGACGGCTCCTGTGACACTCGTCAAATGCTTGAAATCCATTAAAGAACATGCTTTTGATAAATCTCCATACCCTGTTGTTATTACTTTTGAAGACCACCTTACGACCAAGCTTCGGTGTATAGTTGCAGAGATGGTTACCCAAATATTTGGAGATATGTTGTATTATCCAAAGCCAGAAGACCCGATGACAGAATTTCCTTCACCTGAAGCTTTAAAATATCGGATTATTATCTCAACCAAGCCACCAAAAGTAGGTGAAGGCAATGACAAGGATTCATCTGAAGAATCAGAAAAGAGTGACTGCAGTGATAAAGAAACTGAGAGCAAAACTGCAGTTGACATCAAACCCATCCAGTCAGAAGCACCTGAGTATGCGGAACTTATAACAATCCATGCTGGAAAACTACAAGGTGGTTTGAAAGAGGCTCTAGAGGTTGGTGAAAAAGTAAGACGTCTTAGTTTGAGTGAACAAAAACTAGAAAAGGCTGCTGAAGATCATGGAGCTGATATTGTTAGGTTCACACAGAGGAACATTCTAAGGATCTACCCCAAGGGAACACGAGTTACCTCCTCGAATTACAAACCGCATGTTGGGTGGATGCATGGAGCTCAAATGGTTGCGTTTAATATGCAGGGACGTGACAAATTACTATGGTTGATGCATGGGATGTTTAGAGCCAATGGAGGGTGCGGTTACGTGAAAAAGCCTGGCTTTTTGATGCATAAGGGCCCAAATAATGAGGTTTTTGATCCTAGAAGGCACTTGATGGTGACAAAGACATTGAAGGTGAAAGTATACGTTGGGAACGGATGGCACTTGGATTTTAGTCAAACACACTTCGATTCGTTCTCCCCACCAGACTTCTACACAAAAGTTTATATTGTTGGAGTGCCTGCAGATTGTGCCAAGTACAAAACAGAAATAAAAAACGACGAATGGATACCTGTTTGGGATGAAGAGTTTACATTCGGTATGACCGTTCCAGAGCTCGCTATACTTCGGATTGAAGTTCGAGAGTATGACAGGTCTGATAAAGATGACTTTGGTGGCCAGACGTGTTTGCCGGTCTCGGAGCTAAGAACCGGGTTCCGGTCAGTCGCACTTTACGATCATAAGGGTGAGAAATACACATCTGTAAGGCTCCTAATGCGGTTTCAATTTGAGTCAAATCTCGCACCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

626

Amino Acids

71.55

Weight (kDa)

8.48

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 169 - 312 3.4e-52 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 384 - 469 7.9e-29 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 492 - 594 1.2e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1079
AatII GACGTC 2 cut(s) 189, 1150
AccI GTMKAC 1 cut(s) 1491
AccII CGCG 1 cut(s) 398
AciI CCGC 8 cut(s) 148, 213, 219, 396, 1070, 1280, 1386, 1846
AclWI GGATC 2 cut(s) 1244, 1439
AcoI YGGCCR 3 cut(s) 291, 647, 1744
AcsI RAATTY 3 cut(s) 440, 467, 887
AcuI CTGAAG 3 cut(s) 921, 996, 1206
AcyI GRCGYC 3 cut(s) 186, 297, 1147
AfaI GTAC 4 cut(s) 250, 495, 554, 1607
AfiI CCNNNNNNNGG 8 cut(s) 219, 433, 460, 807, 947, 1286, 1380, 1785
AflIII ACRYGT 1 cut(s) 1751
AjiI CACGTC 2 cut(s) 1334, 1752
AjnI CCWGG 2 cut(s) 267, 1402
AluBI AGCT 7 cut(s) 637, 805, 905, 1199, 1304, 1684, 1771
AluI AGCT 7 cut(s) 637, 805, 905, 1199, 1304, 1684, 1771
Alw21I GWGCWC 3 cut(s) 423, 1306, 1686
Alw26I GTCTC 1 cut(s) 1768
AlwI GGATC 2 cut(s) 1244, 1439
AlwNI CAGNNNCTG 1 cut(s) 582
AoxI GGCC 8 cut(s) 270, 291, 402, 424, 475, 647, 1423, 1744
ApaI GGGCCC 1 cut(s) 1427
ApeKI GCWGC 1 cut(s) 1181
ApoI RAATTY 3 cut(s) 440, 467, 887
AspLEI GCGC 2 cut(s) 306, 400
AspS9I GGNCC 6 cut(s) 346, 403, 476, 690, 1423, 1424
AsuC2I CCSGG 1 cut(s) 1780
AsuHPI GGTGA 6 cut(s) 888, 962, 1145, 1477, 1495, 1826
AsuII TTCGAA 1 cut(s) 659
AvaII GGWCC 2 cut(s) 346, 690
BaeGI GKGCMC 2 cut(s) 546, 1427
BalI TGGCCA 2 cut(s) 649, 1746
BanII GRGCYC 3 cut(s) 1306, 1427, 1686
BauI CACGAG 1 cut(s) 1254
BbsI GAAGAC 3 cut(s) 648, 792, 879
Bbv12I GWGCWC 3 cut(s) 423, 1306, 1686
BbvI GCAGC 1 cut(s) 1168
BccI CCATC 5 cut(s) 488, 820, 1052, 1456, 1500
BceAI ACGGC 3 cut(s) 439, 490, 714
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 2 cut(s) 269, 1404
BciVI GTATCC 1 cut(s) 1629
BcnI CCSGG 1 cut(s) 1780
BcoDI GTCTC 1 cut(s) 1768
BfaI CTAG 4 cut(s) 1124, 1172, 1449, 1879
BfmI CTRYAG 4 cut(s) 583, 997, 1026, 1590
BfuI GTATCC 1 cut(s) 1629
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 3 cut(s) 213, 396, 1182
BlsI GCNGC 3 cut(s) 214, 397, 1183
Bme1390I CCNGG 3 cut(s) 269, 1404, 1780
Bme18I GGWCC 2 cut(s) 346, 690
BmgBI CACGTC 2 cut(s) 1334, 1752
BmgT120I GGNCC 6 cut(s) 346, 403, 476, 690, 1423, 1424
BmiI GGNNCC 6 cut(s) 348, 478, 702, 1425, 1784, 1838
BmrFI CCNGG 3 cut(s) 269, 1404, 1780
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 5 cut(s) 315, 346, 1284, 1344, 1404
BmuI ACTGGG 1 cut(s) 570
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 3 cut(s) 648, 792, 879
Bpu14I TTCGAA 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 1780
Bsa29I ATCGAT 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 1393
BsaBI GATNNNNATC 2 cut(s) 22, 923
BsaHI GRCGYC 3 cut(s) 186, 297, 1147
BsaI GGTCTC 1 cut(s) 1768
BsaJI CCNNGG 1 cut(s) 1245
BsaWI WCCGGW 1 cut(s) 1785
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 8 cut(s) 219, 433, 460, 807, 947, 1286, 1380, 1785
Bse118I RCCGGY 3 cut(s) 215, 400, 1759
Bse1I ACTGG 3 cut(s) 241, 565, 1048
Bse3DI GCAATG 1 cut(s) 964
Bse8I GATNNNNATC 2 cut(s) 22, 923
BseBI CCWGG 2 cut(s) 269, 1404
BseCI ATCGAT 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 1245
BseGI GGATG 7 cut(s) 306, 673, 1044, 1299, 1368, 1511, 1654
BseJI GATNNNNATC 2 cut(s) 22, 923
BseLI CCNNNNNNNGG 8 cut(s) 219, 433, 460, 807, 947, 1286, 1380, 1785
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 3 cut(s) 586, 1005, 1053
BseNI ACTGG 3 cut(s) 241, 565, 1048
BseRI GAGGAG 1 cut(s) 1255
BseSI GKGCMC 2 cut(s) 546, 1427
BseXI GCAGC 1 cut(s) 1168
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 8 cut(s) 272, 293, 404, 426, 477, 649, 1425, 1746
BshVI ATCGAT 1 cut(s) 16
BsiHKAI GWGCWC 3 cut(s) 423, 1306, 1686
BsiSI CCGG 5 cut(s) 216, 401, 1760, 1779, 1786
BsiWI CGTACG 1 cut(s) 248
BslFI GGGAC 2 cut(s) 217, 1344
BslI CCNNNNNNNGG 8 cut(s) 219, 433, 460, 807, 947, 1286, 1380, 1785
BsmAI GTCTC 1 cut(s) 1768
BsmFI GGGAC 2 cut(s) 217, 1344
BsnI GGCC 8 cut(s) 272, 293, 404, 426, 477, 649, 1425, 1746
Bso31I GGTCTC 1 cut(s) 1768
Bsp119I TTCGAA 1 cut(s) 659
Bsp120I GGGCCC 1 cut(s) 1423
Bsp1286I GDGCHC 5 cut(s) 423, 546, 1306, 1427, 1686
Bsp143I GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
BspACI CCGC 8 cut(s) 148, 213, 219, 396, 1070, 1280, 1386, 1846
BspANI GGCC 8 cut(s) 272, 293, 404, 426, 477, 649, 1425, 1746
BspCNI CTCAG 3 cut(s) 585, 1006, 1054
BspDI ATCGAT 1 cut(s) 16
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 6 cut(s) 348, 478, 702, 1425, 1784, 1838
BspMAI CTGCAG 3 cut(s) 1001, 1030, 1594
BspPI GGATC 2 cut(s) 1244, 1439
BspT104I TTCGAA 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 1768
BsrDI GCAATG 1 cut(s) 964
BsrFI RCCGGY 3 cut(s) 215, 400, 1759
BsrI ACTGG 3 cut(s) 241, 565, 1048
BssAI RCCGGY 3 cut(s) 215, 400, 1759
BssECI CCNNGG 1 cut(s) 1245
BssMI GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
BssNAI GTATAC 1 cut(s) 1492
BssNI GRCGYC 3 cut(s) 186, 297, 1147
BssSI CACGAG 1 cut(s) 1254
BssT1I CCWWGG 1 cut(s) 1245
Bst1107I GTATAC 1 cut(s) 1492
Bst2BI CACGAG 1 cut(s) 1254
Bst2UI CCWGG 2 cut(s) 269, 1404
Bst4CI ACNGT 3 cut(s) 375, 584, 1675
Bst6I CTCTTC 1 cut(s) 1647
BstACI GRCGYC 3 cut(s) 186, 297, 1147
BstAPI GCANNNNNTGC 1 cut(s) 1598
BstBAI YACGTR 1 cut(s) 1393
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 4 cut(s) 217, 402, 1590, 1686
BstDEI CTNAG 6 cut(s) 572, 1014, 1062, 1151, 1232, 1772
BstEII GGTNACC 1 cut(s) 829
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 7 cut(s) 306, 673, 1044, 1299, 1368, 1511, 1654
BstFNI CGCG 1 cut(s) 398
BstHHI GCGC 2 cut(s) 306, 400
BstKTI GATC 8 cut(s) 20, 90, 162, 261, 1192, 1239, 1447, 1807
BstMAI GTCTC 1 cut(s) 1768
BstMBI GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
BstMWI GCNNNNNNNGC 3 cut(s) 401, 1598, 1843
BstNI CCWGG 2 cut(s) 269, 1404
BstNSI RCATGY 2 cut(s) 746, 1286
BstPAI GACNNNNGTC 1 cut(s) 713
BstPI GGTNACC 1 cut(s) 829
BstSCI CCNGG 3 cut(s) 267, 1402, 1778
BstSFI CTRYAG 4 cut(s) 583, 997, 1026, 1590
BstSLI GKGCMC 2 cut(s) 546, 1427
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 1168
BstV2I GAAGAC 3 cut(s) 648, 792, 879
BstX2I RGATCY 1 cut(s) 1236
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 1 cut(s) 1236
BstZ17I GTATAC 1 cut(s) 1492
Bsu15I ATCGAT 1 cut(s) 16
BsuI GTATCC 1 cut(s) 1629
BsuRI GGCC 8 cut(s) 272, 293, 404, 426, 477, 649, 1425, 1746
BsuTUI ATCGAT 1 cut(s) 16
BtrI CACGTC 2 cut(s) 1334, 1752
BtsCI GGATG 7 cut(s) 306, 673, 1044, 1299, 1368, 1511, 1654
BtsI GCAGTG 2 cut(s) 583, 1006
BtsIMutI CAGTG 2 cut(s) 583, 1006
Cac8I GCNNGC 4 cut(s) 217, 402, 1590, 1686
CaiI CAGNNNCTG 1 cut(s) 582
CfoI GCGC 2 cut(s) 306, 400
Cfr10I RCCGGY 3 cut(s) 215, 400, 1759
Cfr13I GGNCC 6 cut(s) 346, 403, 476, 690, 1423, 1424
ClaI ATCGAT 1 cut(s) 16
CseI GACGC 1 cut(s) 305
Csp6I GTAC 4 cut(s) 249, 494, 553, 1606
CviQI GTAC 4 cut(s) 249, 494, 553, 1606
DdeI CTNAG 6 cut(s) 572, 1014, 1062, 1151, 1232, 1772
DpnI GATC 8 cut(s) 19, 89, 161, 260, 1191, 1238, 1446, 1806
DpnII GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
DraI TTTAAA 1 cut(s) 909
EaeI YGGCCR 3 cut(s) 291, 647, 1744
Eam1104I CTCTTC 1 cut(s) 1647
EarI CTCTTC 1 cut(s) 1647
Ecl136II GAGCTC 2 cut(s) 1304, 1684
Eco130I CCWWGG 1 cut(s) 1245
Eco24I GRGCYC 3 cut(s) 1306, 1427, 1686
Eco31I GGTCTC 1 cut(s) 1768
Eco47I GGWCC 2 cut(s) 346, 690
Eco53kI GAGCTC 2 cut(s) 1304, 1684
Eco57I CTGAAG 3 cut(s) 921, 996, 1206
Eco91I GGTNACC 1 cut(s) 829
EcoICRI GAGCTC 2 cut(s) 1304, 1684
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoO109I RGGNCCY 2 cut(s) 690, 1423
EcoO65I GGTNACC 1 cut(s) 829
EcoRI GAATTC 2 cut(s) 440, 467
EcoRII CCWGG 2 cut(s) 267, 1402
EcoT14I CCWWGG 1 cut(s) 1245
EcoT22I ATGCAT 3 cut(s) 1299, 1359, 1419
EcoT38I GRGCYC 3 cut(s) 1306, 1427, 1686
ErhI CCWWGG 1 cut(s) 1245
FalI AAGNNNNNCTT 6 cut(s) 182, 214, 777, 809, 1391, 1423
FaqI GGGAC 2 cut(s) 217, 1344
FauI CCCGC 1 cut(s) 212
FblI GTMKAC 1 cut(s) 1491
Fnu4HI GCNGC 3 cut(s) 213, 396, 1182
FokI GGATG 7 cut(s) 293, 680, 1031, 1306, 1375, 1518, 1661
FriOI GRGCYC 3 cut(s) 1306, 1427, 1686
Fsp4HI GCNGC 3 cut(s) 213, 396, 1182
FspBI CTAG 4 cut(s) 1124, 1172, 1449, 1879
GlaI GCGC 2 cut(s) 305, 399
GluI GCNGC 3 cut(s) 213, 396, 1182
HaeIII GGCC 8 cut(s) 272, 293, 404, 426, 477, 649, 1425, 1746
HapII CCGG 5 cut(s) 216, 401, 1760, 1779, 1786
HgaI GACGC 1 cut(s) 305
HhaI GCGC 2 cut(s) 306, 400
Hin1I GRCGYC 3 cut(s) 186, 297, 1147
Hin6I GCGC 2 cut(s) 304, 398
HinP1I GCGC 2 cut(s) 304, 398
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HindIII AAGCTT 2 cut(s) 803, 903
HinfI GANTC 5 cut(s) 565, 968, 980, 1538, 1859
HpaII CCGG 5 cut(s) 216, 401, 1760, 1779, 1786
HphI GGTGA 6 cut(s) 888, 962, 1145, 1477, 1495, 1826
Hpy166II GTNNAC 6 cut(s) 496, 1033, 1163, 1215, 1492, 1659
Hpy188III TCNNGA 7 cut(s) 91, 157, 182, 256, 1124, 1679, 1709
Hpy8I GTNNAC 6 cut(s) 496, 1033, 1163, 1215, 1492, 1659
Hpy99I CGWCG 5 cut(s) 107, 188, 299, 333, 1631
HpyAV CCTTC 5 cut(s) 681, 903, 947, 1446, 1474
HpyCH4III ACNGT 3 cut(s) 375, 584, 1675
HpyCH4IV ACGT 8 cut(s) 186, 251, 653, 1147, 1333, 1392, 1494, 1751
HpyCH4V TGCA 8 cut(s) 821, 999, 1028, 1297, 1327, 1357, 1417, 1592
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 1598, 1843
HpyF3I CTNAG 6 cut(s) 572, 1014, 1062, 1151, 1232, 1772
HpySE526I ACGT 8 cut(s) 186, 251, 653, 1147, 1333, 1392, 1494, 1751
Hsp92I GRCGYC 3 cut(s) 186, 297, 1147
HspAI GCGC 2 cut(s) 304, 398
KroI GCCGGC 2 cut(s) 215, 400
KroNI GCCGGC 2 cut(s) 217, 402
Kzo9I GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
LmnI GCTCC 7 cut(s) 330, 517, 706, 1196, 1301, 1768, 1842
Lsp1109I GCAGC 1 cut(s) 1168
LweI GCATC 5 cut(s) 315, 346, 1284, 1344, 1404
MaeI CTAG 4 cut(s) 1124, 1172, 1449, 1879
MaeII ACGT 8 cut(s) 186, 251, 653, 1147, 1333, 1392, 1494, 1751
MaeIII GTNAC 8 cut(s) 578, 706, 829, 992, 1258, 1334, 1388, 1465
MalI GATC 8 cut(s) 19, 89, 161, 260, 1191, 1238, 1446, 1806
MboI GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
MflI RGATCY 1 cut(s) 1236
MhlI GDGCHC 5 cut(s) 423, 546, 1306, 1427, 1686
MlsI TGGCCA 2 cut(s) 649, 1746
MluCI AATT 9 cut(s) 440, 448, 467, 547, 630, 887, 1270, 1340, 1853
MluNI TGGCCA 2 cut(s) 649, 1746
MlyI GAGTC 1 cut(s) 1868
MmeI TCCRAC 2 cut(s) 352, 1561
Mox20I TGGCCA 2 cut(s) 649, 1746
Mph1103I ATGCAT 3 cut(s) 1299, 1359, 1419
MreI CGCCGGCG 1 cut(s) 215
MroNI GCCGGC 2 cut(s) 215, 400
MscI TGGCCA 2 cut(s) 649, 1746
MseI TTAA 4 cut(s) 603, 735, 908, 1320
MslI CAYNNNNRTG 1 cut(s) 1812
Msp20I TGGCCA 2 cut(s) 649, 1746
MspI CCGG 5 cut(s) 216, 401, 1760, 1779, 1786
MspR9I CCNGG 3 cut(s) 269, 1404, 1780
MvaI CCWGG 2 cut(s) 269, 1404
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 401, 1598, 1843
NaeI GCCGGC 2 cut(s) 217, 402
NciI CCSGG 1 cut(s) 1780
NdeII GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
NgoMIV GCCGGC 2 cut(s) 215, 400
NlaIV GGNNCC 6 cut(s) 348, 478, 702, 1425, 1784, 1838
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 5 cut(s) 578, 706, 992, 1334, 1465
NsiI ATGCAT 3 cut(s) 1299, 1359, 1419
NspI RCATGY 2 cut(s) 746, 1286
NspV TTCGAA 1 cut(s) 659
PcsI WCGNNNNNNNCGW 2 cut(s) 1671, 1800
PdiI GCCGGC 2 cut(s) 217, 402
PfeI GAWTC 4 cut(s) 565, 968, 980, 1538
Pfl23II CGTACG 1 cut(s) 248
PkrI GCNGC 3 cut(s) 214, 397, 1183
PleI GAGTC 1 cut(s) 1867
PpsI GAGTC 1 cut(s) 1867
Ppu21I YACGTR 1 cut(s) 1393
PpuMI RGGWCCY 1 cut(s) 690
PshAI GACNNNNGTC 1 cut(s) 713
PsiI TTATAA 1 cut(s) 1079
Psp124BI GAGCTC 2 cut(s) 1306, 1686
Psp5II RGGWCCY 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 267, 1402
PspEI GGTNACC 1 cut(s) 829
PspGI CCWGG 2 cut(s) 267, 1402
PspLI CGTACG 1 cut(s) 248
PspN4I GGNNCC 6 cut(s) 348, 478, 702, 1425, 1784, 1838
PspOMI GGGCCC 1 cut(s) 1423
PspPI GGNCC 6 cut(s) 346, 403, 476, 690, 1423, 1424
PspPPI RGGWCCY 1 cut(s) 690
PsrI GAACNNNNNNTAC 2 cut(s) 1243, 1275
PstI CTGCAG 3 cut(s) 1001, 1030, 1594
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 1236
RsaI GTAC 4 cut(s) 250, 495, 554, 1607
RsaNI GTAC 4 cut(s) 249, 494, 553, 1606
RseI CAYNNNNRTG 1 cut(s) 1812
SacI GAGCTC 2 cut(s) 1306, 1686
SaqAI TTAA 4 cut(s) 603, 735, 908, 1320
SatI GCNGC 3 cut(s) 213, 396, 1182
Sau3AI GATC 8 cut(s) 17, 87, 159, 258, 1189, 1236, 1444, 1804
Sau96I GGNCC 6 cut(s) 346, 403, 476, 690, 1423, 1424
SchI GAGTC 1 cut(s) 1868
ScrFI CCNGG 3 cut(s) 269, 1404, 1780
SduI GDGCHC 5 cut(s) 423, 546, 1306, 1427, 1686
SfaNI GCATC 5 cut(s) 315, 346, 1284, 1344, 1404
SfcI CTRYAG 4 cut(s) 583, 997, 1026, 1590
SfuI TTCGAA 1 cut(s) 659
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 2 cut(s) 346, 690
SmiMI CAYNNNNRTG 1 cut(s) 1812
Sse9I AATT 9 cut(s) 440, 448, 467, 547, 630, 887, 1270, 1340, 1853
SsiI CCGC 8 cut(s) 148, 213, 219, 396, 1070, 1280, 1386, 1846
SspI AATATT 1 cut(s) 840
SspMI CTAG 4 cut(s) 1124, 1172, 1449, 1879
SstI GAGCTC 2 cut(s) 1306, 1686
StyD4I CCNGG 3 cut(s) 267, 1402, 1778
StyI CCWWGG 1 cut(s) 1245
TaaI ACNGT 3 cut(s) 375, 584, 1675
TaiI ACGT 8 cut(s) 189, 254, 656, 1150, 1336, 1395, 1497, 1754
TaqI TCGA 7 cut(s) 16, 261, 459, 659, 1268, 1536, 1708
TasI AATT 9 cut(s) 440, 448, 467, 547, 630, 887, 1270, 1340, 1853
TatI WGTACW 1 cut(s) 1605
TauI GCSGC 2 cut(s) 215, 398
TfiI GAWTC 4 cut(s) 565, 968, 980, 1538
Tru1I TTAA 4 cut(s) 603, 735, 908, 1320
Tru9I TTAA 4 cut(s) 603, 735, 908, 1320
TscAI CASTG 2 cut(s) 583, 1006
TseFI GTSAC 5 cut(s) 578, 706, 992, 1334, 1465
TseI GCWGC 1 cut(s) 1181
Tsp45I GTSAC 5 cut(s) 578, 706, 992, 1334, 1465
TspDTI ATGAA 3 cut(s) 520, 960, 1665
TspGWI ACGGA 5 cut(s) 236, 271, 359, 504, 1518
TspRI CASTG 2 cut(s) 583, 1006
VpaK11BI GGWCC 2 cut(s) 346, 690
XagI CCTNNNNNAGG 1 cut(s) 458
XapI RAATTY 3 cut(s) 440, 467, 887
XbaI TCTAGA 1 cut(s) 1123
XceI RCATGY 2 cut(s) 746, 1286
XmiI GTMKAC 1 cut(s) 1491
XspI CTAG 4 cut(s) 1124, 1172, 1449, 1879
ZraI GACGTC 2 cut(s) 187, 1148
Zsp2I ATGCAT 3 cut(s) 1299, 1359, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.