Rroxscaffold_4G00282740

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000239
Physical Location & Seq
Reverse (-)
4882594 .. 4886191
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282740.1

Sequence Viewer

Length: 945 bp
ATGGCGGCATCAGAGGAAGACATCAAGCTCTCACTTCTCAGCAAAAATACGAGAGAGTTTAGCAGTGAAATCTTCAAGACCAATGCAGTAAAGCTTGCAGGCATAATTCATGAAGCTGTAACCCGTGACGAATCAATAGAGATGCAAGATTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAGATTCTACTTGGTTTCGATCTAGGCACCATGTCTGGAACAAACAATGAAGAAAGTATCCAGTTTTCAAATGCTTTTGATGTTGCAAACGGAGCTACCCTTTATCGTGTTGCTGATATCTTCTGGAAGATCAAACGGTTCTTGAACATTGGTACAGAAGCAATTGAAAGACTCCATAATCCAGAAGATGATGATGAGCTACCTCTAAAGAAAAAAGACTTCGTCTCCAGGCTTTTAGAAACTTGTGAGACTGATCCAAAGTACTTGAGAGACATAGTCCTCACTTTTATTGCTGCCGGAAAAGATACATCTGCTTCTGCTCTTTCATGGTTTCTTTATATGATGTGCAAACATCTTGATATACAAGAAAAGATTGCACAGGAAGTTAGAGAAGCAACAGGCCTAAATAATAGTTCAAGCTTTGATGAAGTTGCAGCCAACCTTACTGAAGAAGCGCTTAACAAAATGCAATATCTCCATGCAGCTTTGAATGAGACGCTCAGACTCTATCCCACAATTCCAATGAATGCGAGGATTTGTTTTTCTGATGATGTCTGGCCAGATGGATATAGTGTCAAGAGAGGGCAATTGGTGATATTCCAACTTTATTCAATGGGTCGTGTGAAGTTTATATGGGGTGATGATGCAGAAGAGTTTCGACCAGAAAGATGGCTTGACGAAAATGGCAATTTTCAGGAAGAAAGCCCTTTTAAATTCCTGGCCTTCAATGTAATTAAGAAAACTAAGCAGTTATTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

314

Amino Acids

35.9

Weight (kDa)

4.89

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 22 - 303 5.4e-46 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 1 cut(s) 896
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 2 cut(s) 337, 446
AfeI AGCGCT 1 cut(s) 639
AgsI TTSAA 9 cut(s) 76, 177, 252, 328, 350, 600, 673, 795, 910
AjnI CCWGG 2 cut(s) 410, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 7 cut(s) 28, 94, 116, 278, 382, 603, 668
AluI AGCT 7 cut(s) 28, 94, 116, 278, 382, 603, 668
Alw26I GTCTC 4 cut(s) 412, 425, 447, 671
AlwI GGATC 1 cut(s) 431
Aor51HI AGCGCT 1 cut(s) 639
AoxI GGCC 3 cut(s) 583, 740, 903
ApeKI GCWGC 3 cut(s) 476, 617, 665
ApoI RAATTY 1 cut(s) 896
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 640
AsuHPI GGTGA 2 cut(s) 787, 833
BalI TGGCCA 1 cut(s) 742
BanI GGYRCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 3 cut(s) 463, 629, 677
BccI CCATC 2 cut(s) 740, 846
BciT130I CCWGG 2 cut(s) 412, 902
BciVI GTATCC 1 cut(s) 251
BcoDI GTCTC 4 cut(s) 412, 425, 447, 671
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 641
BfuI GTATCC 1 cut(s) 251
BisI GCNGC 4 cut(s) 6, 477, 618, 666
BlsI GCNGC 4 cut(s) 7, 478, 619, 667
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 412, 902
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 412, 902
BmsI GCATC 3 cut(s) 17, 132, 817
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 2 cut(s) 412, 902
BseDI CCNNGG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 52, 697
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 463, 629, 677
BshFI GGCC 3 cut(s) 585, 742, 905
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 480
BsmAI GTCTC 4 cut(s) 412, 425, 447, 671
BsmBI CGTCTC 2 cut(s) 412, 671
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 3 cut(s) 585, 742, 905
Bsp143I GATC 3 cut(s) 202, 312, 436
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 585, 742, 905
BspCNI CTCAG 2 cut(s) 51, 696
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 202, 312, 436
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 412, 902
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 96, 100
BstDEI CTNAG 3 cut(s) 38, 683, 927
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 3 cut(s) 205, 315, 439
BstMAI GTCTC 4 cut(s) 412, 425, 447, 671
BstMBI GATC 3 cut(s) 202, 312, 436
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 2 cut(s) 412, 902
BstSCI CCNGG 2 cut(s) 410, 900
BstV1I GCAGC 3 cut(s) 463, 629, 677
BstV2I GAAGAC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 852
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 3 cut(s) 585, 742, 905
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 96, 100
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 640
CseI GACGC 1 cut(s) 688
Csp6I GTAC 2 cut(s) 336, 445
CviAII CATG 5 cut(s) 110, 214, 510, 662, 942
CviQI GTAC 2 cut(s) 336, 445
DdeI CTNAG 3 cut(s) 38, 683, 927
DpnI GATC 3 cut(s) 204, 314, 438
DpnII GATC 3 cut(s) 202, 312, 436
DraI TTTAAA 1 cut(s) 895
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 585
Eco32I GATATC 1 cut(s) 301
Eco47III AGCGCT 1 cut(s) 639
Eco57I CTGAAG 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 410, 900
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 2 cut(s) 412, 671
FaeI CATG 5 cut(s) 113, 217, 513, 665, 945
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 5 cut(s) 109, 213, 509, 661, 941
Fnu4HI GCNGC 4 cut(s) 6, 477, 618, 666
Fsp4HI GCNGC 4 cut(s) 6, 477, 618, 666
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 639
GluI GCNGC 4 cut(s) 6, 477, 618, 666
GsuI CTGGAG 1 cut(s) 394
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 3 cut(s) 585, 742, 905
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 640
Hin1II CATG 5 cut(s) 113, 217, 513, 665, 945
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HindIII AAGCTT 2 cut(s) 92, 601
HinfI GANTC 5 cut(s) 131, 173, 187, 354, 687
HpaII CCGG 1 cut(s) 480
HphI GGTGA 2 cut(s) 787, 833
Hpy188I TCNGA 3 cut(s) 13, 686, 730
HpyAV CCTTC 1 cut(s) 916
HpyCH4III ACNGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 3 cut(s) 38, 683, 927
Hsp92II CATG 5 cut(s) 113, 217, 513, 665, 945
HspAI GCGC 1 cut(s) 638
Kzo9I GATC 3 cut(s) 202, 312, 436
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 3 cut(s) 463, 629, 677
LweI GCATC 3 cut(s) 17, 132, 817
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 118, 125
MalI GATC 3 cut(s) 204, 314, 438
MboI GATC 3 cut(s) 202, 312, 436
MboII GAAGA 9 cut(s) 29, 64, 245, 295, 322, 380, 644, 845, 893
MfeI CAATTG 2 cut(s) 345, 770
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 7 cut(s) 105, 345, 699, 770, 871, 896, 915
MluNI TGGCCA 1 cut(s) 742
MlyI GAGTC 2 cut(s) 348, 681
MmeI TCCRAC 1 cut(s) 808
MnlI CCTC 5 cut(s) 7, 396, 473, 708, 758
Mox20I TGGCCA 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 837
MscI TGGCCA 1 cut(s) 742
MseI TTAA 3 cut(s) 642, 894, 918
Msp20I TGGCCA 1 cut(s) 742
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 2 cut(s) 412, 902
MunI CAATTG 2 cut(s) 345, 770
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 2 cut(s) 412, 902
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 3 cut(s) 202, 312, 436
NlaIII CATG 5 cut(s) 113, 217, 513, 665, 945
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 125
PagI TCATGA 1 cut(s) 109
PceI AGGCCT 1 cut(s) 585
PctI GAATGC 1 cut(s) 715
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 3 cut(s) 131, 173, 187
PflFI GACNNNGTC 2 cut(s) 404, 458
PkrI GCNGC 4 cut(s) 7, 478, 619, 667
PleI GAGTC 2 cut(s) 348, 681
PpsI GAGTC 2 cut(s) 348, 681
Psp6I CCWGG 2 cut(s) 410, 900
PspGI CCWGG 2 cut(s) 410, 900
PspN4I GGNNCC 1 cut(s) 211
PsyI GACNNNGTC 2 cut(s) 404, 458
RsaI GTAC 2 cut(s) 337, 446
RsaNI GTAC 2 cut(s) 336, 445
SaqAI TTAA 3 cut(s) 642, 894, 918
SatI GCNGC 4 cut(s) 6, 477, 618, 666
Sau3AI GATC 3 cut(s) 202, 312, 436
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 2 cut(s) 348, 681
ScrFI CCNGG 2 cut(s) 412, 902
SfaNI GCATC 3 cut(s) 17, 132, 817
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 7 cut(s) 105, 345, 699, 770, 871, 896, 915
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 206
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 2 cut(s) 410, 900
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 201, 841
TasI AATT 7 cut(s) 105, 345, 699, 770, 871, 896, 915
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 131, 173, 187
Tru1I TTAA 3 cut(s) 642, 894, 918
Tru9I TTAA 3 cut(s) 642, 894, 918
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 3 cut(s) 476, 617, 665
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 7 cut(s) 98, 126, 173, 246, 498, 624, 722
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 2 cut(s) 404, 458
XapI RAATTY 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.