Pentatricopeptide repeat-containing protein At5g66520-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1221 |
| AbsI | CCTCGAGG | 1 cut(s) | 266 |
| AccB1I | GGYRCC | 1 cut(s) | 48 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1232 |
| AccI | GTMKAC | 2 cut(s) | 1198, 1702 |
| AclWI | GGATC | 7 cut(s) | 216, 624, 693, 706, 1070, 1083, 1385 |
| AcuI | CTGAAG | 3 cut(s) | 274, 620, 756 |
| AcyI | GRCGYC | 2 cut(s) | 49, 1093 |
| AdeI | CACNNNGTG | 1 cut(s) | 1247 |
| AfaI | GTAC | 6 cut(s) | 26, 110, 507, 593, 1187, 1769 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 172, 184, 1049, 1232 |
| AflII | CTTAAG | 1 cut(s) | 1102 |
| AflIII | ACRYGT | 2 cut(s) | 1201, 1665 |
| AgsI | TTSAA | 7 cut(s) | 229, 280, 464, 1121, 1426, 1468, 1649 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1368 |
| AjnI | CCWGG | 1 cut(s) | 195 |
| Alw21I | GWGCWC | 2 cut(s) | 327, 1252 |
| Alw26I | GTCTC | 1 cut(s) | 1070 |
| Alw44I | GTGCAC | 1 cut(s) | 323 |
| AlwI | GGATC | 7 cut(s) | 216, 624, 693, 706, 1070, 1083, 1385 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 411 |
| Ama87I | CYCGRG | 1 cut(s) | 266 |
| AoxI | GGCC | 4 cut(s) | 121, 192, 270, 476 |
| ApaLI | GTGCAC | 1 cut(s) | 323 |
| ApeKI | GCWGC | 8 cut(s) | 794, 797, 809, 821, 827, 911, 914, 1535 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1586, 1618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspLEI | GCGC | 2 cut(s) | 51, 343 |
| AspS9I | GGNCC | 4 cut(s) | 175, 193, 477, 1370 |
| AsuC2I | CCSGG | 1 cut(s) | 696 |
| AsuHPI | GGTGA | 3 cut(s) | 1309, 1441, 1485 |
| AsuII | TTCGAA | 1 cut(s) | 485 |
| AvaI | CYCGRG | 1 cut(s) | 266 |
| AvaII | GGWCC | 2 cut(s) | 175, 1370 |
| BaeGI | GKGCMC | 2 cut(s) | 327, 989 |
| BamHI | GGATCC | 2 cut(s) | 698, 1075 |
| BanI | GGYRCC | 1 cut(s) | 48 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 8, 40 |
| BauI | CACGAG | 1 cut(s) | 1655 |
| Bbv12I | GWGCWC | 2 cut(s) | 327, 1252 |
| BbvI | GCAGC | 8 cut(s) | 781, 784, 796, 808, 839, 901, 923, 1522 |
| BccI | CCATC | 1 cut(s) | 730 |
| BceAI | ACGGC | 1 cut(s) | 50 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 791, 825, 1490, 1524 |
| BciT130I | CCWGG | 1 cut(s) | 197 |
| BcnI | CCSGG | 1 cut(s) | 696 |
| BcoDI | GTCTC | 1 cut(s) | 1070 |
| BfaI | CTAG | 2 cut(s) | 1568, 1802 |
| BfmI | CTRYAG | 3 cut(s) | 412, 915, 1536 |
| BfoI | RGCGCY | 1 cut(s) | 52 |
| BfrI | CTTAAG | 1 cut(s) | 1102 |
| BlpI | GCTNAGC | 1 cut(s) | 401 |
| BmcAI | AGTACT | 1 cut(s) | 110 |
| Bme1390I | CCNGG | 2 cut(s) | 197, 696 |
| Bme18I | GGWCC | 2 cut(s) | 175, 1370 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1368 |
| BmeT110I | CYCGRG | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 4 cut(s) | 175, 193, 477, 1370 |
| BmiI | GGNNCC | 4 cut(s) | 50, 78, 700, 1077 |
| BmrFI | CCNGG | 2 cut(s) | 197, 696 |
| BmrI | ACTGGG | 1 cut(s) | 91 |
| BmsI | GCATC | 5 cut(s) | 1136, 1290, 1319, 1474, 1737 |
| BmuI | ACTGGG | 1 cut(s) | 91 |
| BoxI | GACNNNNGTC | 1 cut(s) | 161 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 847, 879 |
| BpmI | CTGGAG | 2 cut(s) | 516, 1548 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 401 |
| Bpu14I | TTCGAA | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 1 cut(s) | 803 |
| BpuMI | CCSGG | 1 cut(s) | 696 |
| BsaAI | YACGTR | 1 cut(s) | 1202 |
| BsaHI | GRCGYC | 2 cut(s) | 49, 1093 |
| BsaJI | CCNNGG | 2 cut(s) | 183, 195 |
| BsaWI | WCCGGW | 2 cut(s) | 368, 389 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 77, 95, 107, 125, 441, 471, 968, 998 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 172, 184, 1049, 1232 |
| Bse1I | ACTGG | 7 cut(s) | 97, 106, 210, 533, 556, 1372, 1583 |
| Bse3DI | GCAATG | 1 cut(s) | 964 |
| BseBI | CCWGG | 1 cut(s) | 197 |
| BseDI | CCNNGG | 2 cut(s) | 183, 195 |
| BseGI | GGATG | 4 cut(s) | 508, 722, 1334, 1728 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 172, 184, 1049, 1232 |
| BseMI | GCAATG | 1 cut(s) | 964 |
| BseMII | CTCAG | 5 cut(s) | 392, 579, 642, 1169, 1704 |
| BseNI | ACTGG | 7 cut(s) | 97, 106, 210, 533, 556, 1372, 1583 |
| BseRI | GAGGAG | 4 cut(s) | 203, 462, 681, 989 |
| BseSI | GKGCMC | 2 cut(s) | 327, 989 |
| BseXI | GCAGC | 8 cut(s) | 781, 784, 796, 808, 839, 901, 923, 1522 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1753 |
| BshFI | GGCC | 4 cut(s) | 123, 194, 272, 478 |
| BshNI | GGYRCC | 1 cut(s) | 48 |
| BsiEI | CGRYCG | 1 cut(s) | 1753 |
| BsiHKAI | GWGCWC | 2 cut(s) | 327, 1252 |
| BsiHKCI | CYCGRG | 1 cut(s) | 266 |
| BsiSI | CCGG | 5 cut(s) | 46, 83, 369, 390, 695 |
| BslFI | GGGAC | 4 cut(s) | 79, 532, 878, 1607 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 172, 184, 1049, 1232 |
| BsmAI | GTCTC | 1 cut(s) | 1070 |
| BsmFI | GGGAC | 4 cut(s) | 79, 532, 878, 1607 |
| BsmI | GAATGC | 1 cut(s) | 343 |
| BsnI | GGCC | 4 cut(s) | 123, 194, 272, 478 |
| BsoBI | CYCGRG | 1 cut(s) | 266 |
| Bsp119I | TTCGAA | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 3 cut(s) | 327, 989, 1252 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 401 |
| BspANI | GGCC | 4 cut(s) | 123, 194, 272, 478 |
| BspCNI | CTCAG | 5 cut(s) | 393, 580, 643, 1170, 1705 |
| BspHI | TCATGA | 1 cut(s) | 126 |
| BspLI | GGNNCC | 4 cut(s) | 50, 78, 700, 1077 |
| BspMAI | CTGCAG | 3 cut(s) | 416, 919, 1540 |
| BspPI | GGATC | 7 cut(s) | 216, 624, 693, 706, 1070, 1083, 1385 |
| BspQI | GCTCTTC | 1 cut(s) | 444 |
| BspT104I | TTCGAA | 1 cut(s) | 485 |
| BspT107I | GGYRCC | 1 cut(s) | 48 |
| BspTI | CTTAAG | 1 cut(s) | 1102 |
| BsrDI | GCAATG | 1 cut(s) | 964 |
| BsrI | ACTGG | 7 cut(s) | 97, 106, 210, 533, 556, 1372, 1583 |
| BssECI | CCNNGG | 2 cut(s) | 183, 195 |
| BssNAI | GTATAC | 1 cut(s) | 1199 |
| BssNI | GRCGYC | 2 cut(s) | 49, 1093 |
| BssSI | CACGAG | 1 cut(s) | 1655 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst1107I | GTATAC | 1 cut(s) | 1199 |
| Bst2BI | CACGAG | 1 cut(s) | 1655 |
| Bst2UI | CCWGG | 1 cut(s) | 197 |
| Bst4CI | ACNGT | 1 cut(s) | 1293 |
| Bst6I | CTCTTC | 2 cut(s) | 293, 444 |
| BstACI | GRCGYC | 2 cut(s) | 49, 1093 |
| BstAFI | CTTAAG | 1 cut(s) | 1102 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 411, 821 |
| BstBAI | YACGTR | 1 cut(s) | 1202 |
| BstBI | TTCGAA | 1 cut(s) | 485 |
| BstDEI | CTNAG | 8 cut(s) | 401, 443, 588, 610, 651, 1097, 1178, 1713 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 182 |
| BstF5I | GGATG | 4 cut(s) | 508, 722, 1334, 1728 |
| BstH2I | RGCGCY | 1 cut(s) | 52 |
| BstHHI | GCGC | 2 cut(s) | 51, 343 |
| BstMAI | GTCTC | 1 cut(s) | 1070 |
| BstMCI | CGRYCG | 1 cut(s) | 1753 |
| BstNI | CCWGG | 1 cut(s) | 197 |
| BstNSI | RCATGY | 2 cut(s) | 575, 1669 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 161 |
| BstSCI | CCNGG | 2 cut(s) | 195, 694 |
| BstSFI | CTRYAG | 3 cut(s) | 412, 915, 1536 |
| BstSLI | GKGCMC | 2 cut(s) | 327, 989 |
| BstV1I | GCAGC | 8 cut(s) | 781, 784, 796, 808, 839, 901, 923, 1522 |
| BstX2I | RGATCY | 2 cut(s) | 698, 1075 |
| BstYI | RGATCY | 2 cut(s) | 698, 1075 |
| BstZ17I | GTATAC | 1 cut(s) | 1199 |
| BsuRI | GGCC | 4 cut(s) | 123, 194, 272, 478 |
| BtsCI | GGATG | 4 cut(s) | 508, 722, 1334, 1728 |
| BtsI | GCAGTG | 2 cut(s) | 412, 421 |
| BtsIMutI | CAGTG | 6 cut(s) | 298, 412, 421, 540, 563, 1289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 411 |
| CciI | TCATGA | 1 cut(s) | 126 |
| CfoI | GCGC | 2 cut(s) | 51, 343 |
| Cfr13I | GGNCC | 4 cut(s) | 175, 193, 477, 1370 |
| CseI | GACGC | 2 cut(s) | 1082, 1573 |
| Csp6I | GTAC | 6 cut(s) | 25, 109, 506, 592, 1186, 1768 |
| CviAII | CATG | 8 cut(s) | 127, 329, 512, 572, 1031, 1139, 1244, 1666 |
| CviQI | GTAC | 6 cut(s) | 25, 109, 506, 592, 1186, 1768 |
| DdeI | CTNAG | 8 cut(s) | 401, 443, 588, 610, 651, 1097, 1178, 1713 |
| DinI | GGCGCC | 1 cut(s) | 50 |
| DraIII | CACNNNGTG | 1 cut(s) | 1247 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1368 |
| Eam1104I | CTCTTC | 2 cut(s) | 293, 444 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1368 |
| EarI | CTCTTC | 2 cut(s) | 293, 444 |
| EciI | GGCGGA | 2 cut(s) | 47, 69 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco147I | AGGCCT | 1 cut(s) | 272 |
| Eco47I | GGWCC | 2 cut(s) | 175, 1370 |
| Eco57I | CTGAAG | 3 cut(s) | 274, 620, 756 |
| Eco88I | CYCGRG | 1 cut(s) | 266 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 182 |
| EcoO109I | RGGNCCY | 1 cut(s) | 175 |
| EcoRII | CCWGG | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| EcoT22I | ATGCAT | 2 cut(s) | 1489, 1794 |
| EgeI | GGCGCC | 1 cut(s) | 50 |
| EheI | GGCGCC | 1 cut(s) | 50 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| FaeI | CATG | 8 cut(s) | 130, 332, 515, 575, 1034, 1142, 1247, 1669 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 272, 304, 423, 455, 426, 458, 1667, 1699 |
| FaqI | GGGAC | 4 cut(s) | 79, 532, 878, 1607 |
| FatI | CATG | 8 cut(s) | 126, 328, 511, 571, 1030, 1138, 1243, 1665 |
| FblI | GTMKAC | 2 cut(s) | 1198, 1702 |
| FokI | GGATG | 4 cut(s) | 515, 709, 1341, 1715 |
| FspBI | CTAG | 2 cut(s) | 1568, 1802 |
| GlaI | GCGC | 2 cut(s) | 50, 342 |
| GsuI | CTGGAG | 2 cut(s) | 516, 1548 |
| HaeII | RGCGCY | 1 cut(s) | 52 |
| HaeIII | GGCC | 4 cut(s) | 123, 194, 272, 478 |
| HapII | CCGG | 5 cut(s) | 46, 83, 369, 390, 695 |
| HgaI | GACGC | 2 cut(s) | 1082, 1573 |
| HhaI | GCGC | 2 cut(s) | 51, 343 |
| Hin1I | GRCGYC | 2 cut(s) | 49, 1093 |
| Hin1II | CATG | 8 cut(s) | 130, 332, 515, 575, 1034, 1142, 1247, 1669 |
| Hin6I | GCGC | 2 cut(s) | 49, 341 |
| HinP1I | GCGC | 2 cut(s) | 49, 341 |
| HincII | GTYRAC | 1 cut(s) | 1362 |
| HindII | GTYRAC | 1 cut(s) | 1362 |
| HindIII | AAGCTT | 2 cut(s) | 876, 1781 |
| HinfI | GANTC | 6 cut(s) | 256, 731, 977, 1208, 1582, 1639 |
| HpaII | CCGG | 5 cut(s) | 46, 83, 369, 390, 695 |
| HphI | GGTGA | 3 cut(s) | 1309, 1441, 1485 |
| Hpy166II | GTNNAC | 8 cut(s) | 325, 1040, 1186, 1199, 1207, 1362, 1654, 1703 |
| Hpy188III | TCNNGA | 8 cut(s) | 127, 154, 166, 782, 866, 1131, 1625, 1655 |
| Hpy8I | GTNNAC | 8 cut(s) | 325, 1040, 1186, 1199, 1207, 1362, 1654, 1703 |
| HpyAV | CCTTC | 6 cut(s) | 163, 283, 738, 780, 1420, 1442 |
| HpyCH4III | ACNGT | 1 cut(s) | 1293 |
| HpyCH4IV | ACGT | 2 cut(s) | 23, 1201 |
| HpyF3I | CTNAG | 8 cut(s) | 401, 443, 588, 610, 651, 1097, 1178, 1713 |
| HpySE526I | ACGT | 2 cut(s) | 23, 1201 |
| Hsp92I | GRCGYC | 2 cut(s) | 49, 1093 |
| Hsp92II | CATG | 8 cut(s) | 130, 332, 515, 575, 1034, 1142, 1247, 1669 |
| HspAI | GCGC | 2 cut(s) | 49, 341 |
| KasI | GGCGCC | 1 cut(s) | 48 |
| LguI | GCTCTTC | 1 cut(s) | 444 |
| LmnI | GCTCC | 4 cut(s) | 82, 535, 868, 908 |
| Lsp1109I | GCAGC | 8 cut(s) | 781, 784, 796, 808, 839, 901, 923, 1522 |
| LweI | GCATC | 5 cut(s) | 1136, 1290, 1319, 1474, 1737 |
| MaeI | CTAG | 2 cut(s) | 1568, 1802 |
| MaeII | ACGT | 2 cut(s) | 23, 1201 |
| MaeIII | GTNAC | 4 cut(s) | 293, 407, 537, 1239 |
| MflI | RGATCY | 2 cut(s) | 698, 1075 |
| MhlI | GDGCHC | 3 cut(s) | 327, 989, 1252 |
| MluCI | AATT | 7 cut(s) | 376, 481, 603, 938, 1020, 1216, 1628 |
| Mly113I | GGCGCC | 1 cut(s) | 49 |
| MlyI | GAGTC | 2 cut(s) | 986, 1202 |
| Mph1103I | ATGCAT | 2 cut(s) | 1489, 1794 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MseI | TTAA | 8 cut(s) | 429, 711, 842, 1019, 1103, 1266, 1413, 1616 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1482, 1659 |
| MspA1I | CMGCKG | 3 cut(s) | 400, 830, 914 |
| MspCI | CTTAAG | 1 cut(s) | 1102 |
| MspI | CCGG | 5 cut(s) | 46, 83, 369, 390, 695 |
| MspR9I | CCNGG | 2 cut(s) | 197, 696 |
| Mva1269I | GAATGC | 1 cut(s) | 343 |
| MvaI | CCWGG | 1 cut(s) | 197 |
| NarI | GGCGCC | 1 cut(s) | 49 |
| NciI | CCSGG | 1 cut(s) | 696 |
| NlaIII | CATG | 8 cut(s) | 130, 332, 515, 575, 1034, 1142, 1247, 1669 |
| NlaIV | GGNNCC | 4 cut(s) | 50, 78, 700, 1077 |
| NmuCI | GTSAC | 4 cut(s) | 293, 407, 537, 1239 |
| NsiI | ATGCAT | 2 cut(s) | 1489, 1794 |
| NspI | RCATGY | 2 cut(s) | 575, 1669 |
| NspV | TTCGAA | 1 cut(s) | 485 |
| PaeR7I | CTCGAG | 1 cut(s) | 266 |
| PagI | TCATGA | 1 cut(s) | 126 |
| PceI | AGGCCT | 1 cut(s) | 272 |
| PciI | ACATGT | 1 cut(s) | 1665 |
| PciSI | GCTCTTC | 1 cut(s) | 444 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 20 |
| PctI | GAATGC | 1 cut(s) | 343 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PfeI | GAWTC | 4 cut(s) | 256, 731, 1582, 1639 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1232 |
| PfoI | TCCNGGA | 1 cut(s) | 694 |
| PleI | GAGTC | 2 cut(s) | 985, 1202 |
| PluTI | GGCGCC | 1 cut(s) | 52 |
| PpsI | GAGTC | 2 cut(s) | 985, 1202 |
| Ppu21I | YACGTR | 1 cut(s) | 1202 |
| PpuMI | RGGWCCY | 1 cut(s) | 175 |
| PscI | ACATGT | 1 cut(s) | 1665 |
| PshAI | GACNNNNGTC | 1 cut(s) | 161 |
| PsiI | TTATAA | 1 cut(s) | 1221 |
| Psp5II | RGGWCCY | 1 cut(s) | 175 |
| Psp6I | CCWGG | 1 cut(s) | 195 |
| PspGI | CCWGG | 1 cut(s) | 195 |
| PspN4I | GGNNCC | 4 cut(s) | 50, 78, 700, 1077 |
| PspPI | GGNCC | 4 cut(s) | 175, 193, 477, 1370 |
| PspPPI | RGGWCCY | 1 cut(s) | 175 |
| PspXI | VCTCGAGB | 1 cut(s) | 266 |
| PstI | CTGCAG | 3 cut(s) | 416, 919, 1540 |
| PstNI | CAGNNNCTG | 1 cut(s) | 411 |
| PsuI | RGATCY | 2 cut(s) | 698, 1075 |
| PvuII | CAGCTG | 3 cut(s) | 400, 830, 914 |
| RsaI | GTAC | 6 cut(s) | 26, 110, 507, 593, 1187, 1769 |
| RsaNI | GTAC | 6 cut(s) | 25, 109, 506, 592, 1186, 1768 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1482, 1659 |
| SapI | GCTCTTC | 1 cut(s) | 444 |
| SaqAI | TTAA | 8 cut(s) | 429, 711, 842, 1019, 1103, 1266, 1413, 1616 |
| Sau96I | GGNCC | 4 cut(s) | 175, 193, 477, 1370 |
| ScaI | AGTACT | 1 cut(s) | 110 |
| SchI | GAGTC | 2 cut(s) | 986, 1202 |
| ScrFI | CCNGG | 2 cut(s) | 197, 696 |
| SduI | GDGCHC | 3 cut(s) | 327, 989, 1252 |
| SfaNI | GCATC | 5 cut(s) | 1136, 1290, 1319, 1474, 1737 |
| SfcI | CTRYAG | 3 cut(s) | 412, 915, 1536 |
| SfoI | GGCGCC | 1 cut(s) | 50 |
| Sfr274I | CTCGAG | 1 cut(s) | 266 |
| SfuI | TTCGAA | 1 cut(s) | 485 |
| SinI | GGWCC | 2 cut(s) | 175, 1370 |
| SlaI | CTCGAG | 1 cut(s) | 266 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1482, 1659 |
| SmlI | CTYRAG | 3 cut(s) | 266, 782, 1102 |
| SmoI | CTYRAG | 3 cut(s) | 266, 782, 1102 |
| Sse9I | AATT | 7 cut(s) | 376, 481, 603, 938, 1020, 1216, 1628 |
| SseBI | AGGCCT | 1 cut(s) | 272 |
| SspDI | GGCGCC | 1 cut(s) | 48 |
| SspI | AATATT | 1 cut(s) | 1174 |
| SspMI | CTAG | 2 cut(s) | 1568, 1802 |
| StuI | AGGCCT | 1 cut(s) | 272 |
| StyD4I | CCNGG | 2 cut(s) | 195, 694 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 1 cut(s) | 1293 |
| TaiI | ACGT | 2 cut(s) | 26, 1204 |
| TaqI | TCGA | 4 cut(s) | 135, 267, 485, 1797 |
| TaqII | GACCGA | 1 cut(s) | 173 |
| TasI | AATT | 7 cut(s) | 376, 481, 603, 938, 1020, 1216, 1628 |
| TatI | WGTACW | 3 cut(s) | 108, 505, 1767 |
| TauI | GCSGC | 5 cut(s) | 54, 815, 827, 1093, 1335 |
| TfiI | GAWTC | 4 cut(s) | 256, 731, 1582, 1639 |
| Tru1I | TTAA | 8 cut(s) | 429, 711, 842, 1019, 1103, 1266, 1413, 1616 |
| Tru9I | TTAA | 8 cut(s) | 429, 711, 842, 1019, 1103, 1266, 1413, 1616 |
| TscAI | CASTG | 6 cut(s) | 298, 412, 421, 540, 563, 1296 |
| TseFI | GTSAC | 4 cut(s) | 293, 407, 537, 1239 |
| TseI | GCWGC | 8 cut(s) | 794, 797, 809, 821, 827, 911, 914, 1535 |
| Tsp45I | GTSAC | 4 cut(s) | 293, 407, 537, 1239 |
| TspDTI | ATGAA | 6 cut(s) | 350, 500, 951, 1011, 1019, 1565 |
| TspRI | CASTG | 6 cut(s) | 298, 412, 421, 540, 563, 1296 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1232 |
| Vha464I | CTTAAG | 1 cut(s) | 1102 |
| VneI | GTGCAC | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 2 cut(s) | 175, 1370 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 182 |
| XceI | RCATGY | 2 cut(s) | 575, 1669 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1233 |
| XhoI | CTCGAG | 1 cut(s) | 266 |
| XmiI | GTMKAC | 2 cut(s) | 1198, 1702 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 2 cut(s) | 1568, 1802 |
| ZrmI | AGTACT | 1 cut(s) | 110 |
| Zsp2I | ATGCAT | 2 cut(s) | 1489, 1794 |