Rmu_co8293475.1_g000001

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8293475.1
Physical Location & Seq
Reverse (-)
1 .. 687
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8293475.1_g000001.1.cds

Sequence Viewer

Length: 546 bp
atgagtggaaaagatgaagaaggcaaccggtttacccatgcttttgaattggagcaagaagctgccttgtatcggttaattgatgtattctggaagatcaaacgtttcttaaacatcggtaaggaagcagagctaaagaaaaacatcaaagtggttgatcaatttgtgtataaattaatcaatagcaagattgaaactatccagaatccagaagttaacctattgctgaagaaaagagacttggtttcaaggcgtttggaattgaaagatactgatccaaagtacctgagagacatcgtcctctgtgttactgtcgctggacaagacacgacagctagttctctttcatggtttgtttatatgatgtgcaagcatcttcaaatacaagaaaagattgcacatgaagttagagaagtaataaatttgaaagataattcaagtgttgatgagcttgcagcaagccttaatcaagaagccctgaacagaatgcaatacctccatgcagctttaagtgaaacaatcaggctctatccttcagttccaatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

21.14

Weight (kDa)

6.91

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 103
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 2 cut(s) 248, 519
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 72
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 7 cut(s) 47, 194, 249, 265, 380, 427, 438
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 5 cut(s) 62, 133, 335, 451, 506
AluI AGCT 5 cut(s) 62, 133, 335, 451, 506
Alw26I GTCTC 2 cut(s) 231, 285
AlwI GGATC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 62, 455, 503
ApoI RAATTY 1 cut(s) 421
AseI ATTAAT 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 27
BbvI GCAGC 3 cut(s) 49, 467, 515
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 231, 285
BfaI CTAG 1 cut(s) 336
BisI GCNGC 3 cut(s) 63, 456, 504
BlsI GCNGC 3 cut(s) 64, 457, 505
BmsI GCATC 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 49, 467, 515
BshTI ACCGGT 1 cut(s) 27
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 231, 285
BsmI GAATGC 1 cut(s) 492
Bsp143I GATC 3 cut(s) 96, 157, 274
BspCNI CTCAG 1 cut(s) 279
BspPI GGATC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 3 cut(s) 96, 157, 274
Bst4CI ACNGT 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 371, 453, 460
BstDEI CTNAG 1 cut(s) 287
BstKTI GATC 3 cut(s) 99, 160, 277
BstMAI GTCTC 2 cut(s) 231, 285
BstMBI GATC 3 cut(s) 96, 157, 274
BstV1I GCAGC 3 cut(s) 49, 467, 515
Cac8I GCNNGC 3 cut(s) 371, 453, 460
Cfr10I RCCGGY 1 cut(s) 27
Csp6I GTAC 1 cut(s) 283
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 4 cut(s) 38, 348, 401, 500
CviJI RGCY 8 cut(s) 62, 133, 335, 451, 462, 476, 506, 526
CviKI_1 RGCY 8 cut(s) 62, 133, 335, 451, 462, 476, 506, 526
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 98, 159, 276
DpnII GATC 3 cut(s) 96, 157, 274
Eco57I CTGAAG 2 cut(s) 248, 519
FaeI CATG 4 cut(s) 41, 351, 404, 503
FaiI YATR 7 cut(s) 39, 171, 349, 360, 362, 402, 501
FatI CATG 4 cut(s) 37, 347, 400, 499
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 63, 456, 504
Fsp4HI GCNGC 3 cut(s) 63, 456, 504
FspBI CTAG 1 cut(s) 336
GluI GCNGC 3 cut(s) 63, 456, 504
HapII CCGG 1 cut(s) 28
Hin1II CATG 4 cut(s) 41, 351, 404, 503
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 205
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 33, 217
Hpy188III TCNNGA 4 cut(s) 91, 202, 209, 470
Hpy8I GTNNAC 2 cut(s) 33, 217
HpyAV CCTTC 2 cut(s) 14, 543
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 5 cut(s) 369, 398, 455, 490, 503
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 41, 351, 404, 503
Ksp22I TGATCA 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 96, 157, 274
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 8 cut(s) 41, 76, 215, 222, 299, 303, 491, 508
Lsp1109I GCAGC 3 cut(s) 49, 467, 515
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 307
MalI GATC 3 cut(s) 98, 159, 276
MboI GATC 3 cut(s) 96, 157, 274
MboII GAAGA 4 cut(s) 29, 106, 241, 368
MluCI AATT 7 cut(s) 47, 78, 161, 173, 260, 421, 433
MnlI CCTC 2 cut(s) 311, 506
MseI TTAA 6 cut(s) 77, 110, 176, 216, 465, 509
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 492
NdeII GATC 3 cut(s) 96, 157, 274
NlaIII CATG 4 cut(s) 41, 351, 404, 503
PctI GAATGC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 3 cut(s) 64, 457, 505
PshBI ATTAAT 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 6 cut(s) 77, 110, 176, 216, 465, 509
SatI GCNGC 3 cut(s) 63, 456, 504
Sau3AI GATC 3 cut(s) 96, 157, 274
SetI ASST 9 cut(s) 64, 106, 135, 222, 288, 337, 453, 498, 508
SfaNI GCATC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 7 cut(s) 47, 78, 161, 173, 260, 421, 433
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 106
TasI AATT 7 cut(s) 47, 78, 161, 173, 260, 421, 433
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 6 cut(s) 77, 110, 176, 216, 465, 509
Tru9I TTAA 6 cut(s) 77, 110, 176, 216, 465, 509
TseI GCWGC 3 cut(s) 62, 455, 503
TspDTI ATGAA 3 cut(s) 30, 336, 417
Tth111I GACNNNGTC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 1 cut(s) 421
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.