Rh1CG379000

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000239
Physical Location & Seq
Forward (+)
64786040 .. 64814340
28301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG379000.1

Sequence Viewer

Length: 834 bp
ATGGATTTTCTTTCCACTGCTTTACCACCCACAGCAATAAGTTTAGCTGTAATACTCTTGGCCGTTATTTTTTGGCCGGCGAAGAACAAGAGGTACCCTCCTATTGCCGGAACTGTCTTGCACCAAGTCATCAATTTCCCAAGGCTGCATCATTACCACGCTGAGCTTGCATGCAAGTACAAAACTTACAGGATACTAGACTTGTTCAAACATGCTGTCTACACAGTAGATCCTGCAAATGTGCAATACATACTCAAAACAAATGTTGCAAACTATGGCAAGGGATTTTACCTGCATAGCATTCTGTCCGATCTTATGGGAGATGGAATCTTCGCTGTGGATGGGGACAAATGGCTGCATCAAAGGAAGACATCAGGCTCTCACTTCTCAACCAAAGTACTTAGAGACTTCAGTAGTGAAATCTTCAAAACCAATGGGGTAAAACTTGCTGGCATAATTTATGAAGCTGTAACCTGCGACGAATCAATGGATATCCAAGACTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAGATTCTACTCGGCATCGAACTAGGCACCATGTCTGGAACAAATAATGAAGAAAATATTCGGTTTTCCAATGCTTTTGATGATGCAAACCAAGCTACCCTTCATCGTATTTATGATATCTTCTGGAAGATCAAGCGGTTCCTGAACATTGGCATGGAAGCAGAGCTAAGAAAAAATATAGAAGTGGTGGATCACTTTATATACAAATTAATCAACAGAAAGATTGAAACATTCCAAAATTCAGAAAATGATAAGCTATATGTGAGTTATATATTTACATTCCTTTCTGTTCTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

277

Amino Acids

31.76

Weight (kDa)

7.78

Isoelectric Point (pI)

31.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 42 - 261 8.3e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 300, 482
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 93, 560
AccI GTMKAC 1 cut(s) 219
AciI CCGC 1 cut(s) 670
AclWI GGATC 2 cut(s) 224, 732
AcoI YGGCCR 2 cut(s) 60, 74
AcsI RAATTY 1 cut(s) 772
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 3 cut(s) 95, 179, 399
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 4 cut(s) 208, 427, 528, 761
AjuI GAANNNNNNNTTGG 4 cut(s) 503, 535, 618, 650
AluBI AGCT 6 cut(s) 47, 166, 467, 629, 700, 790
AluI AGCT 6 cut(s) 47, 166, 467, 629, 700, 790
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 2 cut(s) 224, 732
AoxI GGCC 2 cut(s) 60, 74
ApeKI GCWGC 2 cut(s) 145, 355
ApoI RAATTY 1 cut(s) 772
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AseI ATTAAT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 591
Asp718I GGTACC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 93, 560
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 132, 342
BccI CCATC 2 cut(s) 317, 335
BceAI ACGGC 1 cut(s) 47
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 2 cut(s) 197, 557
BfuAI ACCTGC 2 cut(s) 300, 482
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 2 cut(s) 146, 356
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 2 cut(s) 147, 357
BmcAI AGTACT 1 cut(s) 399
BmiI GGNNCC 3 cut(s) 95, 562, 674
BmsI GCATC 4 cut(s) 157, 367, 558, 607
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu1102I GCTNAGC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 140, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 140, 519
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 132, 342
BshFI GGCC 2 cut(s) 62, 76
BshNI GGYRCC 2 cut(s) 93, 560
BsiSI CCGG 2 cut(s) 77, 108
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 2 cut(s) 62, 76
Bsp143I GATC 4 cut(s) 229, 310, 663, 724
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 1 cut(s) 670
BspANI GGCC 2 cut(s) 62, 76
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 95, 562, 674
BspMI ACCTGC 2 cut(s) 300, 482
BspPI GGATC 2 cut(s) 224, 732
BspT107I GGYRCC 2 cut(s) 93, 560
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 140, 519
BssMI GATC 4 cut(s) 229, 310, 663, 724
BssT1I CCWWGG 2 cut(s) 140, 519
Bst4CI ACNGT 2 cut(s) 115, 226
BstC8I GCNNGC 4 cut(s) 78, 168, 172, 451
BstDEI CTNAG 3 cut(s) 162, 401, 701
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 4 cut(s) 232, 313, 666, 727
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 4 cut(s) 229, 310, 663, 724
BstMWI GCNNNNNNNGC 2 cut(s) 167, 626
BstNSI RCATGY 2 cut(s) 174, 215
BstV1I GCAGC 2 cut(s) 132, 342
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 62, 76
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 2 cut(s) 300, 482
Cac8I GCNNGC 4 cut(s) 78, 168, 172, 451
Cfr10I RCCGGY 1 cut(s) 76
Csp6I GTAC 3 cut(s) 94, 178, 398
CviAII CATG 4 cut(s) 171, 212, 565, 688
CviQI GTAC 3 cut(s) 94, 178, 398
DdeI CTNAG 3 cut(s) 162, 401, 701
DpnI GATC 4 cut(s) 231, 312, 665, 726
DpnII GATC 4 cut(s) 229, 310, 663, 724
EaeI YGGCCR 2 cut(s) 60, 74
Eco130I CCWWGG 2 cut(s) 140, 519
Eco32I GATATC 2 cut(s) 493, 652
Eco57I CTGAAG 1 cut(s) 394
EcoRV GATATC 2 cut(s) 493, 652
EcoT14I CCWWGG 2 cut(s) 140, 519
ErhI CCWWGG 2 cut(s) 140, 519
FaeI CATG 4 cut(s) 174, 215, 568, 691
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 359
FatI CATG 4 cut(s) 170, 211, 564, 687
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 146, 356
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 146, 356
FspBI CTAG 2 cut(s) 197, 557
GluI GCNGC 2 cut(s) 146, 356
HaeIII GGCC 2 cut(s) 62, 76
HapII CCGG 2 cut(s) 77, 108
Hin1II CATG 4 cut(s) 174, 215, 568, 691
HinfI GANTC 4 cut(s) 327, 482, 524, 538
HpaII CCGG 2 cut(s) 77, 108
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 310, 778, 828
Hpy188III TCNNGA 4 cut(s) 535, 570, 658, 676
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 115, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 626
HpyF3I CTNAG 3 cut(s) 162, 401, 701
Hsp92II CATG 4 cut(s) 174, 215, 568, 691
KpnI GGTACC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 4 cut(s) 229, 310, 663, 724
Lsp1109I GCAGC 2 cut(s) 132, 342
LweI GCATC 4 cut(s) 157, 367, 558, 607
MaeI CTAG 2 cut(s) 197, 557
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 231, 312, 665, 726
MboI GATC 4 cut(s) 229, 310, 663, 724
MboII GAAGA 7 cut(s) 94, 322, 379, 415, 596, 646, 673
MflI RGATCY 1 cut(s) 229
MluCI AATT 4 cut(s) 133, 456, 740, 772
MnlI CCTC 2 cut(s) 84, 108
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 1 cut(s) 686
MspI CCGG 2 cut(s) 77, 108
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 167, 626
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 4 cut(s) 229, 310, 663, 724
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 4 cut(s) 174, 215, 568, 691
NlaIV GGNNCC 3 cut(s) 95, 562, 674
NmeAIII GCCGAG 1 cut(s) 525
NspI RCATGY 2 cut(s) 174, 215
PaeI GCATGC 1 cut(s) 174
PctI GAATGC 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 4 cut(s) 327, 482, 524, 538
PkrI GCNGC 2 cut(s) 147, 357
PshBI ATTAAT 1 cut(s) 743
PspN4I GGNNCC 3 cut(s) 95, 562, 674
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 3 cut(s) 95, 179, 399
RsaNI GTAC 3 cut(s) 94, 178, 398
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 2 cut(s) 146, 356
Sau3AI GATC 4 cut(s) 229, 310, 663, 724
ScaI AGTACT 1 cut(s) 399
SfaNI GCATC 4 cut(s) 157, 367, 558, 607
SmiMI CAYNNNNRTG 1 cut(s) 686
SphI GCATGC 1 cut(s) 174
Sse9I AATT 4 cut(s) 133, 456, 740, 772
SsiI CCGC 1 cut(s) 670
SspI AATATT 1 cut(s) 592
SspMI CTAG 2 cut(s) 197, 557
StyI CCWWGG 2 cut(s) 140, 519
TaaI ACNGT 2 cut(s) 115, 226
TaqI TCGA 1 cut(s) 552
TasI AATT 4 cut(s) 133, 456, 740, 772
TatI WGTACW 2 cut(s) 177, 397
TfiI GAWTC 4 cut(s) 327, 482, 524, 538
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 145, 355
TspDTI ATGAA 4 cut(s) 477, 524, 597, 626
TspRI CASTG 1 cut(s) 22
VspI ATTAAT 1 cut(s) 743
XapI RAATTY 1 cut(s) 772
XceI RCATGY 2 cut(s) 174, 215
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 197, 557
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.