pycom11g06340

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000239
Physical Location & Seq
Reverse (-)
4853896 .. 4854760
865 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g06340.3

Sequence Viewer

Length: 570 bp
ATGCTCTGCAAGCACCCTCATATGCAAGAAAAGGTTGCAAAGGAAGTTCGAGAAGCGGCAAATCTGAAGGACGATTCAAGCTTTGTTGAACTTGGAGATAGTCTTAATGAAGAAGCCCTTAATAAAATGCAGTATCTCTTTGCAGCTTTGACCGAGACACAGAGGCTCTACCCTGCAATTCCACTGAATTCGAAAATCTGTTCATCTGATTACACTTGGCCAGACGGATTTAGTGTAAGAAAAGGTGATATGGTGGCATACAATGCTTATAGCATGGGGAGGATGAAATATCTATGGGGTGATGATGCACATCAATTTCGGCCAAAGAGATGGCTCGATGAAAATGGCGTTTTCCAAGAAGAGAGTCCTTTCAAATTTATAGCCTTCGGGGCGGGTCCAAGGATTTGTTTAGGGAAGGACTTTGCTCGTCGACAGATGTTGACATTTTTTGCTGTGCTTTTGGGGAACTTCATATTCAAATTGAAAGAAGAGAAGAAAGTAGCCCGTTACACGACCAAGATCACCCTCAACATTGATGGGGGCCTTCATGTCCATGCCTCTCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

190

Amino Acids

21.73

Weight (kDa)

8.9

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 430
AciI CCGC 2 cut(s) 56, 392
AcoI YGGCCR 2 cut(s) 218, 320
AcsI RAATTY 2 cut(s) 187, 374
AcuI CTGAAG 1 cut(s) 86
AgsI TTSAA 5 cut(s) 78, 89, 373, 478, 484
AluBI AGCT 2 cut(s) 81, 146
AluI AGCT 2 cut(s) 81, 146
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 3 cut(s) 218, 320, 541
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 187, 374
AspS9I GGNCC 2 cut(s) 395, 541
AsuHPI GGTGA 3 cut(s) 257, 311, 514
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 395
BalI TGGCCA 1 cut(s) 220
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 324, 530
BcoDI GTCTC 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 2 cut(s) 57, 144
BlsI GCNGC 2 cut(s) 58, 145
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 395, 541
BmiI GGNNCC 2 cut(s) 396, 542
BmsI GCATC 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 309
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 3 cut(s) 220, 322, 543
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 3 cut(s) 220, 322, 543
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 519
BspACI CCGC 2 cut(s) 56, 392
BspANI GGCC 3 cut(s) 220, 322, 543
BspLI GGNNCC 2 cut(s) 396, 542
BspT104I TTCGAA 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 519
BssT1I CCWWGG 1 cut(s) 398
Bst6I CTCTTC 2 cut(s) 354, 483
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 563
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 522
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 10, 263, 389
BstV1I GCAGC 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 330
BsuRI GGCC 3 cut(s) 220, 322, 543
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 395, 541
CviAII CATG 3 cut(s) 274, 548, 554
DdeI CTNAG 1 cut(s) 563
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
EaeI YGGCCR 2 cut(s) 218, 320
Eam1104I CTCTTC 2 cut(s) 354, 483
EarI CTCTTC 2 cut(s) 354, 483
Eco130I CCWWGG 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 541
EcoRI GAATTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 3 cut(s) 277, 551, 557
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FatI CATG 3 cut(s) 273, 547, 553
FauI CCCGC 1 cut(s) 385
FauNDI CATATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 57, 144
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 57, 144
GluI GCNGC 2 cut(s) 57, 144
HaeIII GGCC 3 cut(s) 220, 322, 543
Hin1II CATG 3 cut(s) 277, 551, 557
HincII GTYRAC 2 cut(s) 431, 441
HindII GTYRAC 2 cut(s) 431, 441
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 2 cut(s) 74, 364
HphI GGTGA 3 cut(s) 257, 311, 514
Hpy166II GTNNAC 2 cut(s) 431, 441
Hpy188I TCNGA 3 cut(s) 66, 208, 566
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 431, 441
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 4 cut(s) 61, 394, 409, 554
HpyCH4V TGCA 7 cut(s) 9, 25, 38, 130, 143, 176, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 263, 389
HpyF3I CTNAG 1 cut(s) 563
Hsp92II CATG 3 cut(s) 277, 551, 557
Kzo9I GATC 1 cut(s) 519
LpnPI CCDG 2 cut(s) 186, 234
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 506
MalI GATC 1 cut(s) 521
MboI GATC 1 cut(s) 519
MboII GAAGA 4 cut(s) 122, 371, 500, 505
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 5 cut(s) 177, 187, 314, 374, 479
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 373
MnlI CCTC 5 cut(s) 27, 156, 273, 536, 568
Mox20I TGGCCA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 220
MseI TTAA 2 cut(s) 105, 120
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 10, 263, 389
NdeI CATATG 1 cut(s) 21
NdeII GATC 1 cut(s) 519
NlaIII CATG 3 cut(s) 277, 551, 557
NlaIV GGNNCC 2 cut(s) 396, 542
NspV TTCGAA 1 cut(s) 191
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 58, 145
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 396, 542
PspPI GGNCC 2 cut(s) 395, 541
RseI CAYNNNNRTG 1 cut(s) 552
SalI GTCGAC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 105, 120
SatI GCNGC 2 cut(s) 57, 144
Sau3AI GATC 1 cut(s) 519
Sau96I GGNCC 2 cut(s) 395, 541
SchI GAGTC 1 cut(s) 373
SetI ASST 4 cut(s) 36, 83, 148, 247
SfaNI GCATC 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 5 cut(s) 177, 187, 314, 374, 479
SsiI CCGC 2 cut(s) 56, 392
StyI CCWWGG 1 cut(s) 398
TaqI TCGA 4 cut(s) 49, 191, 336, 430
TaqII GACCGA 1 cut(s) 167
TasI AATT 5 cut(s) 177, 187, 314, 374, 479
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 105, 120
Tru9I TTAA 2 cut(s) 105, 120
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 6 cut(s) 123, 192, 299, 354, 460, 536
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 187, 374
XmiI GTMKAC 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.