Rw1G035700

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000239
Physical Location & Seq
Forward (+)
63445774 .. 63448163
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035700.1

Sequence Viewer

Length: 999 bp
ATGACTGAGCTTGCACGAAATTACAAAACTTACAGGATACTTGACTTGTTCAAATATGTAGTTTACACGGCAGATCTTGCGAATGTTGAATACATGCTCAAGACGAACTTTGCAAACTATGGCAAGGGAGAGTACCTGCACAGCCTCATATCAGATGTTGTGGGCAACGGGATCTTCTCTGTGGATGGGGGAAAATGGCGGCATCAGAGGAAGACATCAAGCTCTCAATTCTCAACAAAAGTACTTAGAGAGTTTAGCAGTGAAATTTTCAAGACCAATGCAGTAAAGGTTGCTGACATAATTCATGAAGCTGCAACCTGCAACAAATCAATAGAGATGCAAGATTTGTTTATGAAATCAACCTTGGATTCAATTGTCAAAATTCTACTTGGTTTCGATCTAGGCACCATGTCTGGAACAAACAATGAAGAAAGTATCCGGTTTTCCAATGCTTTTGATGATGCAAACGCATGTACCCTTTATCGTCTTGGTGATATCTTTTGGAAGATCAGACGGTTCTTGAACATTGGTATGGAAGCAGTGCTAAGAGAAAATGTGAAGGTGGTGGATCAATTTATATACAAATTAATCAACACAGAGATTCAAACACTCCATAATTTAGAAGATGATGAGCTACCTCCAACCTTATATCTCCATGCAGCTTTGAATGAGACGCTTAGACTCTATCCTACAGTTCCAATGAATGCGAGGATTTGTTTCTCTGATGATACCTGGCCAGATGGAGATAGTGTCAAAAAAGGGCAACTAGTGATATACCAACCTTATTCAATGGGCCGGATGAAGTTTATATGGGGTGATGATGCAGAAGAGTTTCGACCAGAGAGATGGATTGATGAAAATGGCAATTTCCAGGAAGAAAGCCCTTTCAAATTCTTAGCCTTCAATGCCGGTCCAGGAATTTGTCTCGGAAAGGAGTATAGTTATATCCAGATGAAGATTTTTTCTGCTGTGCTTTTAAGCAGCTATATTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

332

Amino Acids

38.13

Weight (kDa)

5.41

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 206 7.1e-16 Cytochrome P450
p450 PF00067 211 - 329 5.6e-26 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 144, 326
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 1 cut(s) 199
AclWI GGATC 2 cut(s) 179, 576
AcoI YGGCCR 1 cut(s) 734
AcsI RAATTY 4 cut(s) 264, 381, 890, 918
AfaI GTAC 3 cut(s) 134, 243, 475
AhlI ACTAGT 1 cut(s) 766
AjnI CCWGG 3 cut(s) 731, 870, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 7 cut(s) 10, 222, 311, 634, 662, 984, 995
AluI AGCT 7 cut(s) 10, 222, 311, 634, 662, 984, 995
Alw26I GTCTC 2 cut(s) 665, 929
AlwI GGATC 2 cut(s) 179, 576
AoxI GGCC 2 cut(s) 734, 793
ApeKI GCWGC 3 cut(s) 311, 659, 981
ApoI RAATTY 4 cut(s) 264, 381, 890, 918
AseI ATTAAT 1 cut(s) 587
Asp700I GAANNNNTTC 1 cut(s) 831
AspS9I GGNCC 2 cut(s) 793, 911
AsuHPI GGTGA 2 cut(s) 503, 827
AvaII GGWCC 1 cut(s) 911
BaeI ACNNNNGTAYC 2 cut(s) 457, 490
BalI TGGCCA 1 cut(s) 736
BanI GGYRCC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 298, 671, 993
BccI CCATC 3 cut(s) 179, 734, 840
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 733, 872, 915
BciVI GTATCC 2 cut(s) 30, 446
BcoDI GTCTC 2 cut(s) 665, 929
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 2 cut(s) 401, 767
BfmI CTRYAG 1 cut(s) 690
BfuAI ACCTGC 2 cut(s) 144, 326
BfuI GTATCC 2 cut(s) 30, 446
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 200, 312, 660, 982
BlsI GCNGC 4 cut(s) 201, 313, 661, 983
BmcAI AGTACT 1 cut(s) 243
Bme1390I CCNGG 3 cut(s) 733, 872, 915
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 2 cut(s) 793, 911
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 3 cut(s) 733, 872, 915
BmsI GCATC 4 cut(s) 211, 327, 451, 811
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bse118I RCCGGY 1 cut(s) 908
BseBI CCWGG 3 cut(s) 733, 872, 915
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 190, 804
BseXI GCAGC 3 cut(s) 298, 671, 993
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 2 cut(s) 736, 795
BshNI GGYRCC 1 cut(s) 404
BsiSI CCGG 3 cut(s) 439, 796, 909
BsmAI GTCTC 2 cut(s) 665, 929
BsmBI CGTCTC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 2 cut(s) 736, 795
Bsp143I GATC 5 cut(s) 73, 171, 397, 507, 568
BspACI CCGC 1 cut(s) 199
BspANI GGCC 2 cut(s) 736, 795
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 406
BspMI ACCTGC 2 cut(s) 144, 326
BspPI GGATC 2 cut(s) 179, 576
BspT107I GGYRCC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 908
BssAI RCCGGY 1 cut(s) 908
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 5 cut(s) 73, 171, 397, 507, 568
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 3 cut(s) 733, 872, 915
Bst4CI ACNGT 2 cut(s) 516, 694
Bst6I CTCTTC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 6 cut(s) 6, 245, 545, 677, 895, 996
BstF5I GGATG 2 cut(s) 190, 804
BstKTI GATC 5 cut(s) 76, 174, 400, 510, 571
BstMAI GTCTC 2 cut(s) 665, 929
BstMBI GATC 5 cut(s) 73, 171, 397, 507, 568
BstMWI GCNNNNNNNGC 2 cut(s) 77, 905
BstNI CCWGG 3 cut(s) 733, 872, 915
BstNSI RCATGY 2 cut(s) 97, 474
BstSCI CCNGG 3 cut(s) 731, 870, 913
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 3 cut(s) 298, 671, 993
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 2 cut(s) 73, 171
BstXI CCANNNNNNTGG 1 cut(s) 846
BstYI RGATCY 2 cut(s) 73, 171
BsuI GTATCC 2 cut(s) 30, 446
BsuRI GGCC 2 cut(s) 736, 795
BtsCI GGATG 2 cut(s) 190, 804
BtsI GCAGTG 2 cut(s) 265, 546
BtsIMutI CAGTG 2 cut(s) 265, 546
BveI ACCTGC 2 cut(s) 144, 326
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 908
Cfr13I GGNCC 2 cut(s) 793, 911
CseI GACGC 1 cut(s) 682
Csp6I GTAC 3 cut(s) 133, 242, 474
CviAII CATG 5 cut(s) 94, 305, 409, 471, 656
CviQI GTAC 3 cut(s) 133, 242, 474
DdeI CTNAG 6 cut(s) 6, 245, 545, 677, 895, 996
DpnI GATC 5 cut(s) 75, 173, 399, 509, 570
DpnII GATC 5 cut(s) 73, 171, 397, 507, 568
EaeI YGGCCR 1 cut(s) 734
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco130I CCWWGG 1 cut(s) 363
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 911
EcoRII CCWGG 3 cut(s) 731, 870, 913
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 5 cut(s) 97, 308, 412, 474, 659
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 5 cut(s) 93, 304, 408, 470, 655
Fnu4HI GCNGC 4 cut(s) 200, 312, 660, 982
FokI GGATG 2 cut(s) 197, 811
Fsp4HI GCNGC 4 cut(s) 200, 312, 660, 982
FspBI CTAG 2 cut(s) 401, 767
GluI GCNGC 4 cut(s) 200, 312, 660, 982
HaeIII GGCC 2 cut(s) 736, 795
HapII CCGG 3 cut(s) 439, 796, 909
HgaI GACGC 1 cut(s) 682
Hin1II CATG 5 cut(s) 97, 308, 412, 474, 659
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 3 cut(s) 368, 601, 681
HpaII CCGG 3 cut(s) 439, 796, 909
HphI GGTGA 2 cut(s) 503, 827
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 5 cut(s) 154, 207, 512, 724, 929
Hpy188III TCNNGA 6 cut(s) 100, 271, 305, 414, 520, 949
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 553, 910
HpyCH4III ACNGT 2 cut(s) 516, 694
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 905
HpyF3I CTNAG 6 cut(s) 6, 245, 545, 677, 895, 996
Hsp92II CATG 5 cut(s) 97, 308, 412, 474, 659
Kzo9I GATC 5 cut(s) 73, 171, 397, 507, 568
Lsp1109I GCAGC 3 cut(s) 298, 671, 993
LweI GCATC 4 cut(s) 211, 327, 451, 811
MaeI CTAG 2 cut(s) 401, 767
MalI GATC 5 cut(s) 75, 173, 399, 509, 570
MboI GATC 5 cut(s) 73, 171, 397, 507, 568
MboII GAAGA 8 cut(s) 166, 223, 440, 517, 635, 839, 887, 967
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 2 cut(s) 73, 171
MlsI TGGCCA 1 cut(s) 736
MluNI TGGCCA 1 cut(s) 736
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 665
MnlI CCTC 4 cut(s) 155, 201, 648, 702
Mox20I TGGCCA 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 831
MscI TGGCCA 1 cut(s) 736
MseI TTAA 2 cut(s) 587, 977
MslI CAYNNNNRTG 1 cut(s) 530
Msp20I TGGCCA 1 cut(s) 736
MspI CCGG 3 cut(s) 439, 796, 909
MspR9I CCNGG 3 cut(s) 733, 872, 915
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 3 cut(s) 733, 872, 915
MwoI GCNNNNNNNGC 2 cut(s) 77, 905
NdeII GATC 5 cut(s) 73, 171, 397, 507, 568
NlaIII CATG 5 cut(s) 97, 308, 412, 474, 659
NlaIV GGNNCC 1 cut(s) 406
NspI RCATGY 2 cut(s) 97, 474
PagI TCATGA 1 cut(s) 304
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 2 cut(s) 368, 601
PfoI TCCNGGA 2 cut(s) 870, 913
PkrI GCNGC 4 cut(s) 201, 313, 661, 983
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
PshBI ATTAAT 1 cut(s) 587
Psp6I CCWGG 3 cut(s) 731, 870, 913
PspGI CCWGG 3 cut(s) 731, 870, 913
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 2 cut(s) 793, 911
PsuI RGATCY 2 cut(s) 73, 171
RsaI GTAC 3 cut(s) 134, 243, 475
RsaNI GTAC 3 cut(s) 133, 242, 474
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 2 cut(s) 587, 977
SatI GCNGC 4 cut(s) 200, 312, 660, 982
Sau3AI GATC 5 cut(s) 73, 171, 397, 507, 568
Sau96I GGNCC 2 cut(s) 793, 911
ScaI AGTACT 1 cut(s) 243
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 3 cut(s) 733, 872, 915
SfaNI GCATC 4 cut(s) 211, 327, 451, 811
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 911
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 766
SsiI CCGC 1 cut(s) 199
SspMI CTAG 2 cut(s) 401, 767
StyD4I CCNGG 3 cut(s) 731, 870, 913
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 516, 694
TaqI TCGA 2 cut(s) 396, 835
TatI WGTACW 1 cut(s) 241
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 368, 601
Tru1I TTAA 2 cut(s) 587, 977
Tru9I TTAA 2 cut(s) 587, 977
TscAI CASTG 2 cut(s) 265, 546
TseI GCWGC 3 cut(s) 311, 659, 981
TspDTI ATGAA 8 cut(s) 293, 321, 368, 441, 716, 815, 870, 968
TspRI CASTG 2 cut(s) 265, 546
VpaK11BI GGWCC 1 cut(s) 911
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 4 cut(s) 264, 381, 890, 918
XceI RCATGY 2 cut(s) 97, 474
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 2 cut(s) 401, 767
ZrmI AGTACT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.