Rroxscaffold_4G00282840

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000239
Physical Location & Seq
Reverse (-)
4968544 .. 4969842
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282840.1

Sequence Viewer

Length: 792 bp
ATGAAATCAACCTTGGATTCAATTGTCAAGATTCTACTTGGTATTGATCTAGGCACCATGTGTGGAAGAAATAATGAAGAAAGCATTCGGTTTTCCAATGCTTTTGATGATGCAAACGAAGCTACCCTATATCGTGTTGCGGATATCTTCTGGAGGATCAAACGGTTCTTGAACATTGGCAGGGAAGCAGTGCTAAGAAAAAATATGAAAGCGGTGGATCAATTTGTATACAAATTAATCAACAGAAAGATTGAAACACTCCATAATTCAGAAGATGATGCGCAACTTTTAAAGAAAAGAGACTTTATCTCGAGGCTTTTGGAAACTAGAGAGACCGATCCAAAGTACTTGAGAGACATGGTCCTCAGTTTTATTTCTGCCGGCAAAGACACAAATGCTTCTACTCTTTCATGGTTTTTCTATATGATGTGCAAGCATCTCGATATACAAGAAAAGATTGCACATGAAGTTAGAGAAGCAACAGGTCTGAATAATAGTTCAACGGCTGATGAAGTTGCAGCCAACCTTACTGAAGAAGCCCTTAACAAAATGCAATATCTCCATGCAGCTTTGACTGAGACACTAAGACTCTATCCTGCACTTCCAGTGGGTGGTCCAAGAACTTGTATCGGAAAGGAGTATACTTATATACAGTCGAAGATTTTTGTTGTTGTGCTTTTAAGCAGCTACATATTTAAGCTCAGTGATGTGAATAAAGATGTCACATACAAGACAATGGTCACGCTCCATATTGATGGTGGCCTTTATGTTCATGCCTCTCCAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

263

Amino Acids

30.06

Weight (kDa)

8.3

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 202 8.8e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 611
AccI GTMKAC 2 cut(s) 228, 641
AciI CCGC 2 cut(s) 140, 212
AclWI GGATC 3 cut(s) 164, 225, 332
AcuI CTGAAG 1 cut(s) 552
AdeI CACNNNGTG 1 cut(s) 60
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 4 cut(s) 21, 172, 254, 501
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 122, 569, 687, 700
AluI AGCT 4 cut(s) 122, 569, 687, 700
Alw26I GTCTC 4 cut(s) 294, 326, 348, 572
AlwI GGATC 3 cut(s) 164, 225, 332
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 1 cut(s) 760
ApeKI GCWGC 3 cut(s) 518, 566, 684
AseI ATTAAT 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 361, 614
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 2 cut(s) 361, 614
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 530, 578, 696
BccI CCATC 1 cut(s) 749
BceAI ACGGC 1 cut(s) 519
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BcoDI GTCTC 4 cut(s) 294, 326, 348, 572
BfaI CTAG 2 cut(s) 50, 327
BisI GCNGC 3 cut(s) 519, 567, 685
BlsI GCNGC 3 cut(s) 520, 568, 686
BmcAI AGTACT 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 361, 614
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 361, 614
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 3 cut(s) 100, 268, 445
BoxI GACNNNNGTC 1 cut(s) 737
BpmI CTGGAG 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 605
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 3 cut(s) 379, 567, 715
BseNI ACTGG 1 cut(s) 605
BseXI GCAGC 3 cut(s) 530, 578, 696
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 1 cut(s) 762
BshNI GGYRCC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 4 cut(s) 294, 326, 348, 572
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 1 cut(s) 762
Bso31I GGTCTC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 4 cut(s) 46, 156, 217, 337
BspACI CCGC 2 cut(s) 140, 212
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 3 cut(s) 378, 568, 714
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 3 cut(s) 164, 225, 332
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 1 cut(s) 605
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 4 cut(s) 46, 156, 217, 337
BssNAI GTATAC 2 cut(s) 229, 642
BssT1I CCWWGG 1 cut(s) 12
Bst1107I GTATAC 2 cut(s) 229, 642
Bst4CI ACNGT 2 cut(s) 165, 654
BstC8I GCNNGC 2 cut(s) 382, 434
BstDEI CTNAG 5 cut(s) 194, 365, 576, 584, 701
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 4 cut(s) 49, 159, 220, 340
BstMAI GTCTC 4 cut(s) 294, 326, 348, 572
BstMBI GATC 4 cut(s) 46, 156, 217, 337
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 737
BstV1I GCAGC 3 cut(s) 530, 578, 696
BstXI CCANNNNNNTGG 1 cut(s) 755
BstZ17I GTATAC 2 cut(s) 229, 642
BsuRI GGCC 1 cut(s) 762
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 195, 612, 709
Cac8I GCNNGC 2 cut(s) 382, 434
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 361, 614
Csp6I GTAC 1 cut(s) 346
CviAII CATG 6 cut(s) 58, 358, 411, 464, 563, 773
CviJI RGCY 9 cut(s) 122, 316, 506, 521, 539, 569, 687, 700, 762
CviKI_1 RGCY 9 cut(s) 122, 316, 506, 521, 539, 569, 687, 700, 762
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 5 cut(s) 194, 365, 576, 584, 701
DpnI GATC 4 cut(s) 48, 158, 219, 339
DpnII GATC 4 cut(s) 46, 156, 217, 337
DraI TTTAAA 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 361, 614
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 6 cut(s) 61, 361, 414, 467, 566, 776
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 6 cut(s) 57, 357, 410, 463, 562, 772
FblI GTMKAC 2 cut(s) 228, 641
Fnu4HI GCNGC 3 cut(s) 519, 567, 685
Fsp4HI GCNGC 3 cut(s) 519, 567, 685
FspBI CTAG 2 cut(s) 50, 327
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 1 cut(s) 282
GluI GCNGC 3 cut(s) 519, 567, 685
GsuI CTGGAG 1 cut(s) 172
HaeIII GGCC 1 cut(s) 762
HapII CCGG 1 cut(s) 381
HhaI GCGC 1 cut(s) 283
Hin1II CATG 6 cut(s) 61, 361, 414, 467, 566, 776
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 3 cut(s) 17, 31, 588
HpaII CCGG 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 229, 642
Hpy188I TCNGA 3 cut(s) 271, 489, 632
Hpy188III TCNNGA 5 cut(s) 28, 151, 169, 310, 440
Hpy8I GTNNAC 2 cut(s) 229, 642
HpyCH4III ACNGT 2 cut(s) 165, 654
HpyCH4V TGCA 7 cut(s) 113, 432, 461, 518, 553, 566, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 5 cut(s) 194, 365, 576, 584, 701
Hsp92II CATG 6 cut(s) 61, 361, 414, 467, 566, 776
HspAI GCGC 1 cut(s) 281
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 46, 156, 217, 337
LmnI GCTCC 1 cut(s) 750
LpnPI CCDG 6 cut(s) 136, 166, 394, 468, 609, 618
Lsp1109I GCAGC 3 cut(s) 530, 578, 696
LweI GCATC 3 cut(s) 100, 268, 445
MaeI CTAG 2 cut(s) 50, 327
MaeIII GTNAC 2 cut(s) 721, 739
MalI GATC 4 cut(s) 48, 158, 219, 339
MboI GATC 4 cut(s) 46, 156, 217, 337
MboII GAAGA 6 cut(s) 78, 89, 139, 284, 545, 670
MfeI CAATTG 1 cut(s) 21
MluCI AATT 4 cut(s) 21, 221, 233, 265
MlyI GAGTC 1 cut(s) 582
MnlI CCTC 4 cut(s) 147, 306, 374, 787
MroNI GCCGGC 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 5 cut(s) 236, 290, 543, 680, 696
MslI CAYNNNNRTG 1 cut(s) 753
MspI CCGG 1 cut(s) 381
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 382
NdeII GATC 4 cut(s) 46, 156, 217, 337
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 6 cut(s) 61, 361, 414, 467, 566, 776
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 2 cut(s) 721, 739
NsbI TGCGCA 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 310
PctI GAATGC 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 17, 31
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 611
PkrI GCNGC 3 cut(s) 520, 568, 686
PleI GAGTC 1 cut(s) 582
PpsI GAGTC 1 cut(s) 582
PshAI GACNNNNGTC 1 cut(s) 737
PshBI ATTAAT 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 361, 614
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 5 cut(s) 236, 290, 543, 680, 696
SatI GCNGC 3 cut(s) 519, 567, 685
Sau3AI GATC 4 cut(s) 46, 156, 217, 337
Sau96I GGNCC 2 cut(s) 361, 614
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 582
SetI ASST 7 cut(s) 14, 124, 487, 528, 571, 689, 702
SfaNI GCATC 3 cut(s) 100, 268, 445
Sfr274I CTCGAG 1 cut(s) 310
SinI GGWCC 2 cut(s) 361, 614
SlaI CTCGAG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 310, 349
SmoI CTYRAG 2 cut(s) 310, 349
Sse9I AATT 4 cut(s) 21, 221, 233, 265
SsiI CCGC 2 cut(s) 140, 212
SspMI CTAG 2 cut(s) 50, 327
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 165, 654
TaqI TCGA 3 cut(s) 311, 441, 656
TaqII GACCGA 1 cut(s) 350
TasI AATT 4 cut(s) 21, 221, 233, 265
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 2 cut(s) 17, 31
Tru1I TTAA 5 cut(s) 236, 290, 543, 680, 696
Tru9I TTAA 5 cut(s) 236, 290, 543, 680, 696
TscAI CASTG 3 cut(s) 195, 612, 709
TseFI GTSAC 2 cut(s) 721, 739
TseI GCWGC 3 cut(s) 518, 566, 684
Tsp45I GTSAC 2 cut(s) 721, 739
TspDTI ATGAA 7 cut(s) 17, 90, 221, 399, 480, 525, 761
TspRI CASTG 3 cut(s) 195, 612, 709
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 361, 614
VspI ATTAAT 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XhoI CTCGAG 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 228, 641
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 2 cut(s) 50, 327
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.