RchiOBHm_Chr1g0375521

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000239
Physical Location & Seq
Forward (+)
62908064 .. 62910212
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59923

Sequence Viewer

Length: 648 bp
ATGTTGGAAGGAGAGTACCTGCACAGCCTCATATCAGATGTTGTGGGCAACGAGATCTTCTCTGTGGATGGGGGAAAATGGCGGCATCAGAGGAAGACATCAAGCTCTCAATTCTCAACAAAAGTACTTAGAGAGTTTAGTAGTGAAATTTTCAAGACCAATGCAGTAAAGGTTGCTGACATAGTTCATCAAGCTGCCACCTGCAACAAATCAATAGAGATGCAAGATTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAAATTCTACTTGGTTTCGATCTAGGCACCATGTCTGGAACAAACAATGAAGAAAGTATCCGGTTTTCCAATGTTTTTAATGATGCAAACGCATGTACCCTTTATCGTCTTGGTGATATCTTTTGGAAGATCAGACGGTTCTTGAACATTGGTATGGAAGCAGTGCTAAGAGAAAATGTGAAGGTGGTGGATCAATTTATATACAAATTAATCAACACAAAGATTCAAACACTCCATAATTTAGAAGATGATGAGCTACCTTTAAAGAAAAGAGATTTTATCTCCAGGCTTTTGGAAACTAAAGAGACTGATCCAAAGTACCTGAGAGACATGGTCCTTACTTTCATTACTGCCGGCAAAGACACAACTGCTTCTGCTCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

215

Amino Acids

24.53

Weight (kDa)

6.44

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 16 - 215 4.6e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 209
Acc36I ACCTGC 2 cut(s) 27, 209
AccB1I GGYRCC 1 cut(s) 287
AciI CCGC 1 cut(s) 82
AclWI GGATC 2 cut(s) 459, 566
AcsI RAATTY 2 cut(s) 147, 264
AfaI GTAC 4 cut(s) 17, 126, 358, 581
AgsI TTSAA 4 cut(s) 154, 255, 406, 488
AjnI CCWGG 1 cut(s) 545
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 105, 194, 517
AluI AGCT 3 cut(s) 105, 194, 517
Alw26I GTCTC 2 cut(s) 560, 582
AlwI GGATC 2 cut(s) 459, 566
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 147, 264
AseI ATTAAT 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 595
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 547
BciVI GTATCC 1 cut(s) 329
BcoDI GTCTC 2 cut(s) 560, 582
BfaI CTAG 1 cut(s) 284
BfuAI ACCTGC 2 cut(s) 27, 209
BfuI GTATCC 1 cut(s) 329
BglII AGATCT 1 cut(s) 54
BisI GCNGC 2 cut(s) 83, 195
BlsI GCNGC 2 cut(s) 84, 196
BmcAI AGTACT 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 547
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 547
BmsI GCATC 3 cut(s) 94, 210, 334
BpiI GAAGAC 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 614
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 322, 615
BsmAI GTCTC 2 cut(s) 560, 582
Bsp143I GATC 5 cut(s) 54, 280, 390, 451, 571
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 576
BspHI TCATGA 1 cut(s) 644
BspLI GGNNCC 1 cut(s) 289
BspMI ACCTGC 2 cut(s) 27, 209
BspPI GGATC 2 cut(s) 459, 566
BspT107I GGYRCC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 614
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 5 cut(s) 54, 280, 390, 451, 571
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 3 cut(s) 128, 428, 584
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 5 cut(s) 57, 283, 393, 454, 574
BstMAI GTCTC 2 cut(s) 560, 582
BstMBI GATC 5 cut(s) 54, 280, 390, 451, 571
BstNI CCWGG 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 54
BsuI GTATCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 2 cut(s) 27, 209
Cac8I GCNNGC 1 cut(s) 616
CciI TCATGA 1 cut(s) 644
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 595
Csp6I GTAC 4 cut(s) 16, 125, 357, 580
CviAII CATG 4 cut(s) 292, 354, 592, 645
CviJI RGCY 5 cut(s) 27, 105, 194, 517, 550
CviKI_1 RGCY 5 cut(s) 27, 105, 194, 517, 550
CviQI GTAC 4 cut(s) 16, 125, 357, 580
DdeI CTNAG 3 cut(s) 128, 428, 584
DpnI GATC 5 cut(s) 56, 282, 392, 453, 573
DpnII GATC 5 cut(s) 54, 280, 390, 451, 571
DraI TTTAAA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 246
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 545
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 295, 357, 595, 648
FatI CATG 4 cut(s) 291, 353, 591, 644
Fnu4HI GCNGC 2 cut(s) 83, 195
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 83, 195
FspBI CTAG 1 cut(s) 284
GluI GCNGC 2 cut(s) 83, 195
GsuI CTGGAG 1 cut(s) 529
HapII CCGG 2 cut(s) 322, 615
Hin1II CATG 4 cut(s) 295, 357, 595, 648
HinfI GANTC 2 cut(s) 251, 484
HpaII CCGG 2 cut(s) 322, 615
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 3 cut(s) 37, 90, 395
Hpy188III TCNNGA 4 cut(s) 154, 297, 403, 645
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 5 cut(s) 22, 164, 204, 223, 347
HpyF3I CTNAG 3 cut(s) 128, 428, 584
Hsp92II CATG 4 cut(s) 295, 357, 595, 648
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Kzo9I GATC 5 cut(s) 54, 280, 390, 451, 571
LpnPI CCDG 8 cut(s) 32, 214, 282, 335, 532, 559, 596, 628
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 3 cut(s) 94, 210, 334
MaeI CTAG 1 cut(s) 284
MalI GATC 5 cut(s) 56, 282, 392, 453, 573
MboI GATC 5 cut(s) 54, 280, 390, 451, 571
MboII GAAGA 5 cut(s) 49, 106, 323, 400, 518
MflI RGATCY 1 cut(s) 54
MluCI AATT 6 cut(s) 110, 147, 264, 455, 467, 499
MnlI CCTC 2 cut(s) 38, 84
MroNI GCCGGC 1 cut(s) 614
MseI TTAA 3 cut(s) 339, 470, 524
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 2 cut(s) 322, 615
MspR9I CCNGG 1 cut(s) 547
MvaI CCWGG 1 cut(s) 547
NaeI GCCGGC 1 cut(s) 616
NdeII GATC 5 cut(s) 54, 280, 390, 451, 571
NgoMIV GCCGGC 1 cut(s) 614
NlaIII CATG 4 cut(s) 295, 357, 595, 648
NlaIV GGNNCC 1 cut(s) 289
NspI RCATGY 1 cut(s) 357
PagI TCATGA 1 cut(s) 644
PaqCI CACCTGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 251, 484
PflFI GACNNNGTC 1 cut(s) 593
PkrI GCNGC 2 cut(s) 84, 196
PshBI ATTAAT 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 545
PspGI CCWGG 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 595
PsuI RGATCY 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 593
RsaI GTAC 4 cut(s) 17, 126, 358, 581
RsaNI GTAC 4 cut(s) 16, 125, 357, 580
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 3 cut(s) 339, 470, 524
SatI GCNGC 2 cut(s) 83, 195
Sau3AI GATC 5 cut(s) 54, 280, 390, 451, 571
Sau96I GGNCC 1 cut(s) 595
ScaI AGTACT 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 547
SfaNI GCATC 3 cut(s) 94, 210, 334
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 6 cut(s) 110, 147, 264, 455, 467, 499
SsiI CCGC 1 cut(s) 82
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 279
TasI AATT 6 cut(s) 110, 147, 264, 455, 467, 499
TatI WGTACW 1 cut(s) 124
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 251, 484
Tru1I TTAA 3 cut(s) 339, 470, 524
Tru9I TTAA 3 cut(s) 339, 470, 524
TscAI CASTG 1 cut(s) 429
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 5 cut(s) 176, 251, 324, 595, 633
TspRI CASTG 1 cut(s) 429
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 595
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 2 cut(s) 147, 264
XceI RCATGY 1 cut(s) 357
XspI CTAG 1 cut(s) 284
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.