RchiOBHm_Chr1g0359951

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000239
Physical Location & Seq
Reverse (-)
51761251 .. 51762562
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58497

Sequence Viewer

Length: 864 bp
ATGAAGAAGATCAAACGCTTCTTAAACATCGGTAAGGAAGCAGAGCTAAAGAAAAACATCAAAGAGGTCGATCAGTTTTTGTATAAATTAATCAATAGCAAGATTGAAACTATCCAGAATCCAGAAGATGATAACATATATCTGAAGAAAAGAGACTTCGTTTCAAGGCGTTTGGAAATGAAAGATACTGATCCAAAGTACCTGAGAGATATGGTCCTCTGTGTTACCGTCGCCGGACAAGACACGACAGCTAGCTCTCTTTCATGGTTTGTTTATATGATGTGCAAGCATCTTCACATACAAGAAAAGATTGCACAGGAAGTTAGAGAAATAATAAATTTGAAAGATGATCGAAGTGTTGATGAGCTTGCAGCAAGCCTTGATCAAGAAGCCCTTAACAATATGCCATATCTCCACGCCACTTTGAGTGAAACAATCAGACTCTATCCTTCAGTTCCAATGAATGCAAGAATGTGTTTTTCTGATGATACCTGGCCAGATGGATTTAGTGTTAAAAAGGGAGACATGGTGGTATATCAACCTTATGCAATGGGAAGGATGAAATCTCTATGGGGAGATGATGCAGAAGAGTTTCGGCCAGAGAGATGGCTCGACAAAAATGGCCTTTTTCAGGATGAAAGCCCTTACAAATTCATAGCCTTCAGTGCCGGTCCAAGAATTTGTCTAGGAAAGGAACATGCCTATACGCAAATGAAGATCATTTCTGCTGTGCTTTTAGGCAGCTATATATTCAAGCTAGCTGACGAGAAAAAAATTGTCAATTACAAGACCATGGTCTCCCTACCAATTGATGGGGGTCTCTATGTGAAGGCCTCCCCAAGATTATGGCATGCGAAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

287

Amino Acids

33.26

Weight (kDa)

8.45

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 269 6.4e-57 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 812
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 2 cut(s) 494, 596
AcsI RAATTY 3 cut(s) 337, 650, 678
AcuI CTGAAG 3 cut(s) 164, 435, 646
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 631, 812
AgsI TTSAA 4 cut(s) 107, 165, 343, 754
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 7 cut(s) 46, 251, 255, 367, 744, 757, 761
AluI AGCT 7 cut(s) 46, 251, 255, 367, 744, 757, 761
Alw26I GTCTC 4 cut(s) 147, 516, 802, 824
AlwI GGATC 1 cut(s) 185
AoxI GGCC 4 cut(s) 494, 596, 622, 831
ApeKI GCWGC 2 cut(s) 371, 741
ApoI RAATTY 3 cut(s) 337, 650, 678
AseI ATTAAT 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 214, 671
AsuNHI GCTAGC 2 cut(s) 251, 757
AvaII GGWCC 2 cut(s) 214, 671
BalI TGGCCA 1 cut(s) 496
BbvI GCAGC 2 cut(s) 383, 753
BccI CCATC 3 cut(s) 494, 600, 806
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 4 cut(s) 147, 516, 802, 824
BfaI CTAG 3 cut(s) 252, 686, 758
BisI GCNGC 2 cut(s) 372, 742
BlsI GCNGC 2 cut(s) 373, 743
Bme1390I CCNGG 1 cut(s) 493
Bme18I GGWCC 2 cut(s) 214, 671
BmgT120I GGNCC 2 cut(s) 214, 671
BmrFI CCNGG 1 cut(s) 493
BmsI GCATC 2 cut(s) 298, 571
BmtI GCTAGC 2 cut(s) 255, 761
BoxI GACNNNNGTC 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 802, 824
BsaJI CCNNGG 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 812
Bse118I RCCGGY 1 cut(s) 668
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 2 cut(s) 564, 640
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 631, 812
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 383, 753
BshFI GGCC 4 cut(s) 496, 598, 624, 833
BsiSI CCGG 2 cut(s) 234, 669
BslI CCNNNNNNNGG 2 cut(s) 631, 812
BsmAI GTCTC 4 cut(s) 147, 516, 802, 824
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 4 cut(s) 496, 598, 624, 833
Bso31I GGTCTC 2 cut(s) 802, 824
Bsp143I GATC 6 cut(s) 9, 70, 190, 349, 382, 717
Bsp19I CCATGG 1 cut(s) 792
BspANI GGCC 4 cut(s) 496, 598, 624, 833
BspCNI CTCAG 1 cut(s) 195
BspOI GCTAGC 2 cut(s) 255, 761
BspPI GGATC 1 cut(s) 185
BspTNI GGTCTC 2 cut(s) 802, 824
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 668
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 6 cut(s) 9, 70, 190, 349, 382, 717
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 2 cut(s) 229, 861
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 6 cut(s) 253, 287, 369, 376, 759, 852
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 792
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 2 cut(s) 564, 640
BstKTI GATC 6 cut(s) 12, 73, 193, 352, 385, 720
BstMAI GTCTC 4 cut(s) 147, 516, 802, 824
BstMBI GATC 6 cut(s) 9, 70, 190, 349, 382, 717
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 1 cut(s) 493
BstNSI RCATGY 2 cut(s) 701, 854
BstPAI GACNNNNGTC 1 cut(s) 794
BstSCI CCNGG 1 cut(s) 491
BstV1I GCAGC 2 cut(s) 383, 753
BstXI CCANNNNNNTGG 2 cut(s) 606, 846
BsuRI GGCC 4 cut(s) 496, 598, 624, 833
BtgI CCRYGG 1 cut(s) 792
BtsCI GGATG 2 cut(s) 564, 640
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 6 cut(s) 253, 287, 369, 376, 759, 852
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 2 cut(s) 214, 671
Csp6I GTAC 1 cut(s) 199
CviAII CATG 5 cut(s) 264, 526, 698, 793, 851
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 203
DpnI GATC 6 cut(s) 11, 72, 192, 351, 384, 719
DpnII GATC 6 cut(s) 9, 70, 190, 349, 382, 717
EaeI YGGCCR 2 cut(s) 494, 596
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 833
Eco31I GGTCTC 2 cut(s) 802, 824
Eco47I GGWCC 2 cut(s) 214, 671
Eco57I CTGAAG 3 cut(s) 164, 435, 646
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 5 cut(s) 267, 529, 701, 796, 854
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 5 cut(s) 263, 525, 697, 792, 850
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 372, 742
FokI GGATG 2 cut(s) 571, 647
Fsp4HI GCNGC 2 cut(s) 372, 742
FspBI CTAG 3 cut(s) 252, 686, 758
GluI GCNGC 2 cut(s) 372, 742
HaeIII GGCC 4 cut(s) 496, 598, 624, 833
HapII CCGG 2 cut(s) 234, 669
Hin1II CATG 5 cut(s) 267, 529, 701, 796, 854
HinfI GANTC 2 cut(s) 118, 441
HpaII CCGG 2 cut(s) 234, 669
Hpy188I TCNGA 3 cut(s) 144, 440, 484
Hpy188III TCNNGA 4 cut(s) 115, 122, 386, 632
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 459, 549, 670, 823
HpyCH4III ACNGT 2 cut(s) 229, 861
HpyCH4V TGCA 6 cut(s) 285, 314, 371, 467, 548, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 5 cut(s) 267, 529, 701, 796, 854
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 6 cut(s) 9, 70, 190, 349, 382, 717
Lsp1109I GCAGC 2 cut(s) 383, 753
LweI GCATC 2 cut(s) 298, 571
MaeI CTAG 3 cut(s) 252, 686, 758
MaeIII GTNAC 1 cut(s) 223
MalI GATC 6 cut(s) 11, 72, 192, 351, 384, 719
MboI GATC 6 cut(s) 9, 70, 190, 349, 382, 717
MboII GAAGA 7 cut(s) 16, 19, 137, 157, 284, 599, 727
MfeI CAATTG 1 cut(s) 807
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 7 cut(s) 86, 337, 650, 678, 774, 781, 807
MluNI TGGCCA 1 cut(s) 496
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 3 cut(s) 58, 227, 844
Mox20I TGGCCA 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 496
MseI TTAA 4 cut(s) 23, 89, 396, 513
Msp20I TGGCCA 1 cut(s) 496
MspI CCGG 2 cut(s) 234, 669
MspR9I CCNGG 1 cut(s) 493
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 1 cut(s) 493
MwoI GCNNNNNNNGC 1 cut(s) 665
NcoI CCATGG 1 cut(s) 792
NdeII GATC 6 cut(s) 9, 70, 190, 349, 382, 717
NheI GCTAGC 2 cut(s) 251, 757
NlaIII CATG 5 cut(s) 267, 529, 701, 796, 854
NspI RCATGY 2 cut(s) 701, 854
PaeI GCATGC 1 cut(s) 854
PceI AGGCCT 1 cut(s) 833
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 2 cut(s) 373, 743
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
PshAI GACNNNNGTC 1 cut(s) 794
PshBI ATTAAT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspPI GGNCC 2 cut(s) 214, 671
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 4 cut(s) 23, 89, 396, 513
SatI GCNGC 2 cut(s) 372, 742
Sau3AI GATC 6 cut(s) 9, 70, 190, 349, 382, 717
Sau96I GGNCC 2 cut(s) 214, 671
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 493
SfaNI GCATC 2 cut(s) 298, 571
SinI GGWCC 2 cut(s) 214, 671
SphI GCATGC 1 cut(s) 854
Sse9I AATT 7 cut(s) 86, 337, 650, 678, 774, 781, 807
SseBI AGGCCT 1 cut(s) 833
SspMI CTAG 3 cut(s) 252, 686, 758
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 1 cut(s) 491
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 2 cut(s) 229, 861
TaqI TCGA 3 cut(s) 69, 352, 612
TasI AATT 7 cut(s) 86, 337, 650, 678, 774, 781, 807
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 4 cut(s) 23, 89, 396, 513
Tru9I TTAA 4 cut(s) 23, 89, 396, 513
TscAI CASTG 1 cut(s) 670
TseI GCWGC 2 cut(s) 371, 741
TspDTI ATGAA 8 cut(s) 17, 194, 252, 476, 575, 643, 651, 728
TspRI CASTG 1 cut(s) 670
Van91I CCANNNNNTGG 1 cut(s) 812
VpaK11BI GGWCC 2 cut(s) 214, 671
VspI ATTAAT 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 629
XapI RAATTY 3 cut(s) 337, 650, 678
XceI RCATGY 2 cut(s) 701, 854
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 252, 686, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.