Rorug01G0391000

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
50165320 .. 50168251
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0391000.1

Sequence Viewer

Length: 765 bp
ATGGTGGGACCCCCGAGGCCTCAGTTTGTTCTGTTCGGATCCTCCATAGTCCAGTTCAGCTTCAGCAACGGCGGCTGGGGCTCCGTTCTCTCCGACCTCTACGCTCGCAAAGCAGACATATTGCTGCGTGGTTACTTCGGATGGAATTCACGGCGTGCGCTAGAGGTGCTTGATCAAGTTTTTCCCAAGGATGCAGCTGTTCAACCTTCTTTGGTGATAGTCTATTTTGGCGGGAATGATTCTATGGGGCCTCATCCATCTGGGCTAGGACCTCATGTACCACTTCCTGAGTATATTGAGAACATGAGGAAGATTGCAAATCATCTCCAGAGCCTTTCAGATTCAACACGCATCATTTTTCTTAGTTGTCCTCCCGTGAATGAGGCCACGGTTCGTGCAAATAAAAGTCCTTATCTCAGCGAGTTAGTAAGAACGAATGAGCTATGCCAACAATATTCCGAAGCTTGTATAAAGCTATGCCAGGAACTGGATATCAAGGTGGTTGATCTTTTTACGGCAATACAGAAAGGAGAAAACTGTTTTACAGATGGGATTCATTTATCAGCTGAAGGGAGCAAAATAGTGGCGGAGGAGATACTGAAAGTACTGAGAGAAGCTGATTGGAAGCCAAGTTTACACTGGAAATCCATGCCAACAGAATTTGCAGAGGATTCACCATATGATCTTGTTGCTGCTGATGGAAAGACGACGTTAAATCCCTCCGAATGGACGTTTTATAGAGATTTTCACTGGAACTCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

254

Amino Acids

28.46

Weight (kDa)

5.39

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 10 - 199 1.9e-23 GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2 PF13472 11 - 193 6.6e-22 GDSL-like Lipase/Acylhydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 3 cut(s) 72, 231, 587
AclWI GGATC 2 cut(s) 33, 46
AcsI RAATTY 2 cut(s) 145, 659
AcuI CTGAAG 2 cut(s) 46, 588
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 2 cut(s) 279, 606
AfiI CCNNNNNNNGG 2 cut(s) 487, 726
AgsI TTSAA 2 cut(s) 203, 345
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 7 cut(s) 60, 197, 442, 464, 475, 566, 617
AluI AGCT 7 cut(s) 60, 197, 442, 464, 475, 566, 617
AlwI GGATC 2 cut(s) 33, 46
AlwNI CAGNNNCTG 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 3 cut(s) 17, 248, 384
ApeKI GCWGC 3 cut(s) 124, 194, 692
ApoI RAATTY 2 cut(s) 145, 659
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 8, 248, 269
AsuHPI GGTGA 2 cut(s) 226, 666
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 2 cut(s) 8, 269
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 83
BbvI GCAGC 3 cut(s) 111, 206, 679
BccI CCATC 4 cut(s) 135, 265, 542, 692
BceAI ACGGC 3 cut(s) 85, 167, 531
BciT130I CCWGG 1 cut(s) 482
BclI TGATCA 1 cut(s) 172
BfaI CTAG 2 cut(s) 161, 266
BisI GCNGC 4 cut(s) 73, 125, 195, 693
BlsI GCNGC 4 cut(s) 74, 126, 196, 694
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 8, 269
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 8, 248, 269
BmiI GGNNCC 5 cut(s) 9, 10, 40, 82, 249
BmrFI CCNGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 181, 360
BpmI CTGGAG 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 14, 186, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 726
Bse1I ACTGG 4 cut(s) 52, 492, 644, 755
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 3 cut(s) 14, 186, 387
BseGI GGATG 3 cut(s) 146, 196, 253
BseLI CCNNNNNNNGG 2 cut(s) 487, 726
BseMII CTCAG 4 cut(s) 35, 279, 430, 599
BseNI ACTGG 4 cut(s) 52, 492, 644, 755
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 3 cut(s) 111, 206, 679
BseYI CCCAGC 1 cut(s) 75
BshFI GGCC 3 cut(s) 19, 250, 386
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 487, 726
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 3 cut(s) 19, 250, 386
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 4 cut(s) 38, 172, 505, 682
BspACI CCGC 3 cut(s) 72, 231, 587
BspANI GGCC 3 cut(s) 19, 250, 386
BspCNI CTCAG 4 cut(s) 34, 280, 429, 600
BspLI GGNNCC 5 cut(s) 9, 10, 40, 82, 249
BspPI GGATC 2 cut(s) 33, 46
BsrI ACTGG 4 cut(s) 52, 492, 644, 755
BssECI CCNNGG 3 cut(s) 14, 186, 387
BssMI GATC 4 cut(s) 38, 172, 505, 682
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 391, 539
BstC8I GCNNGC 2 cut(s) 106, 156
BstDEI CTNAG 5 cut(s) 21, 288, 362, 416, 608
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 146, 196, 253
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 41, 175, 508, 685
BstMBI GATC 4 cut(s) 38, 172, 505, 682
BstMWI GCNNNNNNNGC 4 cut(s) 72, 78, 110, 166
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 111, 206, 679
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 3 cut(s) 19, 250, 386
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 3 cut(s) 146, 196, 253
BtsIMutI CAGTG 2 cut(s) 637, 748
Cac8I GCNNGC 2 cut(s) 106, 156
CaiI CAGNNNCTG 1 cut(s) 487
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 8, 248, 269
Csp6I GTAC 2 cut(s) 278, 605
CviAII CATG 3 cut(s) 275, 304, 649
CviQI GTAC 2 cut(s) 278, 605
DdeI CTNAG 5 cut(s) 21, 288, 362, 416, 608
DpnI GATC 4 cut(s) 40, 174, 507, 684
DpnII GATC 4 cut(s) 38, 172, 505, 682
DraIII CACNNNGTG 1 cut(s) 155
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 83
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 8, 269
Eco57I CTGAAG 2 cut(s) 46, 588
Eco88I CYCGRG 1 cut(s) 13
EcoO109I RGGNCCY 3 cut(s) 8, 248, 269
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 480
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 278, 307, 652
FaqI GGGAC 1 cut(s) 21
FatI CATG 3 cut(s) 274, 303, 648
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 679
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 73, 125, 195, 693
FokI GGATG 3 cut(s) 153, 203, 240
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 4 cut(s) 73, 125, 195, 693
FspBI CTAG 2 cut(s) 161, 266
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 73, 125, 195, 693
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 19, 250, 386
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 278, 307, 652
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 4 cut(s) 239, 341, 553, 671
HphI GGTGA 2 cut(s) 226, 666
Hpy166II GTNNAC 1 cut(s) 635
Hpy188I TCNGA 6 cut(s) 38, 94, 140, 340, 460, 724
Hpy188III TCNNGA 2 cut(s) 287, 328
Hpy8I GTNNAC 1 cut(s) 635
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 2 cut(s) 216, 563
HpyCH4III ACNGT 2 cut(s) 391, 539
HpyCH4IV ACGT 2 cut(s) 710, 731
HpyCH4V TGCA 4 cut(s) 194, 317, 398, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 78, 110, 166
HpyF3I CTNAG 5 cut(s) 21, 288, 362, 416, 608
HpySE526I ACGT 2 cut(s) 710, 731
Hsp92II CATG 3 cut(s) 278, 307, 652
HspAI GCGC 1 cut(s) 158
KflI GGGWCCC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 38, 172, 505, 682
LmnI GCTCC 2 cut(s) 86, 573
Lsp1109I GCAGC 3 cut(s) 111, 206, 679
LweI GCATC 2 cut(s) 181, 360
MaeI CTAG 2 cut(s) 161, 266
MaeII ACGT 2 cut(s) 710, 731
MaeIII GTNAC 1 cut(s) 131
MalI GATC 4 cut(s) 40, 174, 507, 684
MboI GATC 4 cut(s) 38, 172, 505, 682
MboII GAAGA 1 cut(s) 322
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 2 cut(s) 145, 659
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 1 cut(s) 713
MspA1I CMGCKG 2 cut(s) 197, 566
MspR9I CCNGG 1 cut(s) 482
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 4 cut(s) 72, 78, 110, 166
NdeI CATATG 1 cut(s) 679
NdeII GATC 4 cut(s) 38, 172, 505, 682
NlaIII CATG 3 cut(s) 278, 307, 652
NlaIV GGNNCC 5 cut(s) 9, 10, 40, 82, 249
PceI AGGCCT 1 cut(s) 19
PfeI GAWTC 4 cut(s) 239, 341, 553, 671
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 4 cut(s) 74, 126, 196, 694
PpuMI RGGWCCY 2 cut(s) 8, 269
Psp5II RGGWCCY 2 cut(s) 8, 269
Psp6I CCWGG 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 5 cut(s) 9, 10, 40, 82, 249
PspPI GGNCC 3 cut(s) 8, 248, 269
PspPPI RGGWCCY 2 cut(s) 8, 269
PstNI CAGNNNCTG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 38
PvuII CAGCTG 2 cut(s) 197, 566
RsaI GTAC 2 cut(s) 279, 606
RsaNI GTAC 2 cut(s) 278, 605
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 4 cut(s) 73, 125, 195, 693
Sau3AI GATC 4 cut(s) 38, 172, 505, 682
Sau96I GGNCC 3 cut(s) 8, 248, 269
ScaI AGTACT 1 cut(s) 606
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 2 cut(s) 181, 360
SinI GGWCC 2 cut(s) 8, 269
Sse9I AATT 2 cut(s) 145, 659
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 72, 231, 587
SspI AATATT 1 cut(s) 455
SspMI CTAG 2 cut(s) 161, 266
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 391, 539
TaiI ACGT 2 cut(s) 713, 734
TasI AATT 2 cut(s) 145, 659
TatI WGTACW 1 cut(s) 604
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 4 cut(s) 239, 341, 553, 671
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 2 cut(s) 644, 755
TseI GCWGC 3 cut(s) 124, 194, 692
TspDTI ATGAA 1 cut(s) 545
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 2 cut(s) 644, 755
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 8, 269
XapI RAATTY 2 cut(s) 145, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 636
XspI CTAG 2 cut(s) 161, 266
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.