Rmu_co8068694.1_g000001

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8068694.1
OG0000239
Physical Location & Seq
Forward (+)
34 .. 574
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8068694.1_g000001.1.cds

Sequence Viewer

Length: 410 bp
atggtcctcagttttatggttgctggaaaagactcactggctgtcactccttcatggtttctttatatgatgtgcaagcatcttcaaatacaagaaaagattgcacaggaagttagagaagtaataaatctgaaagacaattcaagtgttgatgagcttgcagcaagccttactgatgaagcccttaagaaaatgcaatatctccatgcggctttgactgaaacaatcagactttatcctgcagttccaatggatgcgaaaatgtgtttttctgatgatacttggccagatgggttaagtgtcaaaaaaggggatgtgattgtttaccaaccttatgcaatgggccggatgaaatttttatggggtgatgatgcagaagagtttcggccagagagatggctcgacaaaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

136

Amino Acids

15.64

Weight (kDa)

5.0

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 284, 386
AcsI RAATTY 1 cut(s) 353
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 86, 144
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AoxI GGCC 3 cut(s) 284, 343, 386
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 4, 343
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 286
BbvI GCAGC 1 cut(s) 173
BccI CCATC 2 cut(s) 284, 390
BfmI CTRYAG 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 162, 210
BlsI GCNGC 2 cut(s) 163, 211
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 343
BmsI GCATC 3 cut(s) 88, 244, 361
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 345
BseGI GGATG 3 cut(s) 259, 319, 354
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 3 cut(s) 286, 345, 388
BsiSI CCGG 1 cut(s) 346
BsnI GGCC 3 cut(s) 286, 345, 388
BspACI CCGC 1 cut(s) 209
BspANI GGCC 3 cut(s) 286, 345, 388
BspCNI CTCAG 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 77, 159, 166
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 3 cut(s) 259, 319, 354
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 396
BsuRI GGCC 3 cut(s) 286, 345, 388
BtsCI GGATG 3 cut(s) 259, 319, 354
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 77, 159, 166
Cfr13I GGNCC 2 cut(s) 4, 343
CviAII CATG 2 cut(s) 54, 206
CviJI RGCY 9 cut(s) 41, 157, 168, 182, 212, 286, 345, 388, 400
CviKI_1 RGCY 9 cut(s) 41, 157, 168, 182, 212, 286, 345, 388, 400
DdeI CTNAG 1 cut(s) 8
EaeI YGGCCR 2 cut(s) 284, 386
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 2 cut(s) 57, 209
FaiI YATR 7 cut(s) 17, 55, 66, 68, 207, 336, 361
FatI CATG 2 cut(s) 53, 205
Fnu4HI GCNGC 2 cut(s) 162, 210
FokI GGATG 3 cut(s) 266, 326, 361
Fsp4HI GCNGC 2 cut(s) 162, 210
GluI GCNGC 2 cut(s) 162, 210
HaeIII GGCC 3 cut(s) 286, 345, 388
HapII CCGG 1 cut(s) 346
Hin1II CATG 2 cut(s) 57, 209
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 132, 230, 274
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 7 cut(s) 75, 104, 161, 196, 242, 338, 374
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 57, 209
LpnPI CCDG 7 cut(s) 9, 23, 92, 252, 300, 359, 402
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 3 cut(s) 88, 244, 361
MaeIII GTNAC 1 cut(s) 43
MboII GAAGA 2 cut(s) 74, 389
MlsI TGGCCA 1 cut(s) 286
MluCI AATT 2 cut(s) 139, 353
MluNI TGGCCA 1 cut(s) 286
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 1 cut(s) 17
Mox20I TGGCCA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 286
MseI TTAA 2 cut(s) 186, 296
Msp20I TGGCCA 1 cut(s) 286
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 346
NlaIII CATG 2 cut(s) 57, 209
NmuCI GTSAC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 381
PkrI GCNGC 2 cut(s) 163, 211
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspPI GGNCC 2 cut(s) 4, 343
PstI CTGCAG 1 cut(s) 244
SaqAI TTAA 2 cut(s) 186, 296
SatI GCNGC 2 cut(s) 162, 210
Sau96I GGNCC 2 cut(s) 4, 343
SchI GAGTC 1 cut(s) 26
SetI ASST 2 cut(s) 159, 334
SfaNI GCATC 3 cut(s) 88, 244, 361
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 139, 353
SsiI CCGC 1 cut(s) 209
TaqI TCGA 1 cut(s) 402
TasI AATT 2 cut(s) 139, 353
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 186, 296
Tru9I TTAA 2 cut(s) 186, 296
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 42, 192, 365
TspRI CASTG 1 cut(s) 42
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.