RLG00000026670

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000239
Physical Location & Seq
Reverse (-)
4776509 .. 4778036
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026670

Sequence Viewer

Length: 801 bp
ATGCTTGGCTTGTTCAGAACTGTGGTTTACACTGCAGATCCTGCAAATATGGAATACGTGTTCAAAACAAACTTCGCTAACTATGGCAAGGGATTGTACCTGCATGACATTATGTCTGATGCTTTGGCCAATGGGATCTTCGCTGTGGATGGGGACAATGGCAAATGGCTGCATCAGAGGAAGGCATCAAGCTCTCAGTTCTCAACCAAAGTACTTAGGGACTTCAGCAGTGAAATCTTCAAAACAAATGGAGTGAAACTTGCTGGCATAATTCATCAAGCTGCAACCTGCAACAAATCAATGGATATGCAAACACCATGTCTGGAACAAACAATGAAGAAACTATATATCAAGTTTTCGAACGCTTCTGATGATTCAAATGGAGCTACCCTCTATCGTGTTTTTGATATCTTCTGGAAGATCAAACGGTTCTTGAACATTGGCACCGAAGCAGTGATAAGAGAAAATATGAAAGTGGTGGATCAATTTATATACAACCTAATCAACAGAAAGATTGAAACACTCCAAAATTCAGAAAATGATGGGCTACCTTTAAAGAAAAGAGACTTTATCCCCAGACTTATGGAAACTAGAGAGACTGATCCAAAGTACTTGAGAGACATGGTCCTCAGTTTTATTGCTGCTGGCAAAGACACTACTGGTTCTGCTCTTTCATGGTTTTTTTATATGATGTGCAAGCATCTCGATATACAAGAAAAGATTGCCCAGGAAGTTAGAGAAGCAATAGGCCTAAATAATAGCTCAAGCGGTGATGAATTAAGTTGCAGCCAACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

267

Amino Acids

30.31

Weight (kDa)

8.22

Isoelectric Point (pI)

23.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 97 - 253 8.8e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 108, 296
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 1 cut(s) 768
AclWI GGATC 4 cut(s) 32, 143, 489, 596
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 3 cut(s) 98, 213, 611
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 5 cut(s) 64, 241, 378, 436, 518
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 726
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AluBI AGCT 4 cut(s) 192, 281, 386, 762
AluI AGCT 4 cut(s) 192, 281, 386, 762
Alw26I GTCTC 3 cut(s) 558, 590, 612
AlwI GGATC 4 cut(s) 32, 143, 489, 596
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 126, 748
ApeKI GCWGC 4 cut(s) 169, 281, 641, 786
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 1 cut(s) 782
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 625
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 156, 268, 628
BccI CCATC 2 cut(s) 143, 536
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciT130I CCWGG 1 cut(s) 728
BcoDI GTCTC 3 cut(s) 558, 590, 612
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 2 cut(s) 108, 296
BisI GCNGC 4 cut(s) 170, 282, 642, 787
BlsI GCNGC 4 cut(s) 171, 283, 643, 788
BmcAI AGTACT 2 cut(s) 213, 611
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 1 cut(s) 625
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 4 cut(s) 109, 181, 194, 709
BplI GAGNNNNNCTC 2 cut(s) 375, 407
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 2 cut(s) 634, 748
BsaAI YACGTR 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 726
Bse1I ACTGG 1 cut(s) 664
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 1 cut(s) 726
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 209, 643
BseNI ACTGG 1 cut(s) 664
BseXI GCAGC 3 cut(s) 156, 268, 628
BshFI GGCC 2 cut(s) 128, 750
BshNI GGYRCC 1 cut(s) 443
BslFI GGGAC 2 cut(s) 167, 233
BsmAI GTCTC 3 cut(s) 558, 590, 612
BsmFI GGGAC 2 cut(s) 167, 233
BsnI GGCC 2 cut(s) 128, 750
Bsp119I TTCGAA 1 cut(s) 359
Bsp143I GATC 5 cut(s) 37, 135, 420, 481, 601
BspACI CCGC 1 cut(s) 768
BspANI GGCC 2 cut(s) 128, 750
BspCNI CTCAG 2 cut(s) 208, 642
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 2 cut(s) 108, 296
BspPI GGATC 4 cut(s) 32, 143, 489, 596
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 443
BsrI ACTGG 1 cut(s) 664
BssECI CCNNGG 1 cut(s) 726
BssMI GATC 5 cut(s) 37, 135, 420, 481, 601
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 22, 429
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 265, 646, 698
BstDEI CTNAG 3 cut(s) 195, 215, 629
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 5 cut(s) 40, 138, 423, 484, 604
BstMAI GTCTC 3 cut(s) 558, 590, 612
BstMBI GATC 5 cut(s) 37, 135, 420, 481, 601
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 726
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 156, 268, 628
BstX2I RGATCY 2 cut(s) 37, 135
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 37, 135
BsuRI GGCC 2 cut(s) 128, 750
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 3 cut(s) 30, 235, 459
BtsIMutI CAGTG 3 cut(s) 30, 235, 459
BveI ACCTGC 2 cut(s) 108, 296
Cac8I GCNNGC 3 cut(s) 265, 646, 698
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 625
Csp6I GTAC 3 cut(s) 97, 212, 610
CviAII CATG 4 cut(s) 104, 318, 622, 675
CviQI GTAC 3 cut(s) 97, 212, 610
DdeI CTNAG 3 cut(s) 195, 215, 629
DpnI GATC 5 cut(s) 39, 137, 422, 483, 603
DpnII GATC 5 cut(s) 37, 135, 420, 481, 601
DraI TTTAAA 1 cut(s) 555
DriI GACNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 750
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 409
FaeI CATG 4 cut(s) 107, 321, 625, 678
FaqI GGGAC 2 cut(s) 167, 233
FatI CATG 4 cut(s) 103, 317, 621, 674
Fnu4HI GCNGC 4 cut(s) 170, 282, 642, 787
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 4 cut(s) 170, 282, 642, 787
FspBI CTAG 1 cut(s) 591
GluI GCNGC 4 cut(s) 170, 282, 642, 787
HaeIII GGCC 2 cut(s) 128, 750
Hin1II CATG 4 cut(s) 107, 321, 625, 678
HinfI GANTC 1 cut(s) 374
HphI GGTGA 1 cut(s) 782
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 5 cut(s) 17, 118, 177, 370, 535
Hpy188III TCNNGA 4 cut(s) 323, 415, 433, 704
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 22, 429
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 9 cut(s) 35, 44, 103, 172, 284, 291, 310, 696, 786
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 195, 215, 629
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 4 cut(s) 107, 321, 625, 678
Kzo9I GATC 5 cut(s) 37, 135, 420, 481, 601
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 3 cut(s) 156, 268, 628
LweI GCATC 4 cut(s) 109, 181, 194, 709
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 57
MalI GATC 5 cut(s) 39, 137, 422, 483, 603
MboI GATC 5 cut(s) 37, 135, 420, 481, 601
MboII GAAGA 5 cut(s) 130, 229, 349, 403, 430
MflI RGATCY 2 cut(s) 37, 135
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 4 cut(s) 270, 485, 529, 776
MluNI TGGCCA 1 cut(s) 128
MnlI CCTC 3 cut(s) 171, 401, 638
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 2 cut(s) 554, 779
Msp20I TGGCCA 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 728
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 5 cut(s) 37, 135, 420, 481, 601
NlaIII CATG 4 cut(s) 107, 321, 625, 678
NlaIV GGNNCC 1 cut(s) 445
NspV TTCGAA 1 cut(s) 359
PceI AGGCCT 1 cut(s) 750
PfeI GAWTC 1 cut(s) 374
PflFI GACNNNGTC 1 cut(s) 623
PkrI GCNGC 4 cut(s) 171, 283, 643, 788
Ppu21I YACGTR 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 625
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 37, 135
PsyI GACNNNGTC 1 cut(s) 623
RsaI GTAC 3 cut(s) 98, 213, 611
RsaNI GTAC 3 cut(s) 97, 212, 610
SaqAI TTAA 2 cut(s) 554, 779
SatI GCNGC 4 cut(s) 170, 282, 642, 787
Sau3AI GATC 5 cut(s) 37, 135, 420, 481, 601
Sau96I GGNCC 1 cut(s) 625
ScaI AGTACT 2 cut(s) 213, 611
ScrFI CCNGG 1 cut(s) 728
SfaNI GCATC 4 cut(s) 109, 181, 194, 709
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 613, 763
SmoI CTYRAG 2 cut(s) 613, 763
Sse9I AATT 4 cut(s) 270, 485, 529, 776
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 1 cut(s) 768
SspMI CTAG 1 cut(s) 591
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 1 cut(s) 726
TaaI ACNGT 2 cut(s) 22, 429
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 359, 705
TasI AATT 4 cut(s) 270, 485, 529, 776
TatI WGTACW 2 cut(s) 211, 609
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 554, 779
Tru9I TTAA 2 cut(s) 554, 779
TscAI CASTG 3 cut(s) 37, 235, 459
TseI GCWGC 4 cut(s) 169, 281, 641, 786
TspDTI ATGAA 5 cut(s) 263, 350, 485, 663, 789
TspRI CASTG 3 cut(s) 37, 235, 459
Tth111I GACNNNGTC 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 1 cut(s) 529
XspI CTAG 1 cut(s) 591
ZrmI AGTACT 2 cut(s) 213, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.