Rmu_sc0001644.1_g000001

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001644.1
OG0000239
Physical Location & Seq
Forward (+)
6295 .. 8553
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001644.1_g000001.1.cds

Sequence Viewer

Length: 1305 bp
atggattttctttccactgctttaccacccacagtaataagtttagctgtaatactcttggccgttattttttggccggcgaagaacaagaggtaccctcctattgccggaactgtcttgcaccaagtcatcaatttcccaaggctgcatcattaccacgctgagcttgcatgcaagtacaaaacttacaggatactagacttgttcaaacatgctgtctacacagtagatcctgcaaatgtgcaatacatactcaaaacaaatgttgcaaactatggcaagggattttacctgcatagcattctgtccgatcttatgggagatggaatcttcgctgtggatggggacaaatggctgcatcaaaggaagacatcaggctctcacttctcaaccaaagtactgagagacttcagtagtagtgaaatcttcaaaaccaatggggtaaaacttgctggcataatttatgaagctgtaacctgcgacgaatcaatggatatccaagacttgtttatgaaatcaaccttggattcaatcgtcaagattctactcggcatcgaactaggcaccatgtctggaacaaataatgaagcaaatattcggttttccaatgcttttgatgatgcaaaccaagctaccctttatcgtatttatgatatcttctggaagatcaagcggttcctgaacattgccggcaaagacacaactgcttctgctctttcatggtttttttatatgatgtgcaagcatttcgatatacaggaaaagattgcacgggaagttagagaagcaacaggtctgaataatacttcaagtgttgatgaacttgcagccaatcttactgaagaagctcttagcaaaatgcactatcttcatgcagctttgactgagacactcagactctatcctaccgttccattggatgcgaaagtttgtttttctgatgatatctggccagatggatttagtgtcaaaaaaggagaaatggtggtataccaaatttattcaatgggccggatgaagtttttatggggtgatgatgcagaagagtttcggccagagagatggcttgacgaaaatggaaatttcaaggaagaaagcgctttcaaattcatagtctttaatgctggtccaagaatttgtgtagggaaagagtatgcttatatgcagatgaagatcgtgtctgctattcttttaggtagctacaaattcaagatgagtgacgagaaaaaactagtcaattacaaaacgatgttcaccctccatatcgatgaaggtcttcatgttaatgcctctccaagagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

434

Amino Acids

49.5

Weight (kDa)

6.9

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 300, 485
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 93, 563
AccI GTMKAC 2 cut(s) 219, 990
AciI CCGC 1 cut(s) 673
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 4 cut(s) 60, 74, 950, 1052
AcsI RAATTY 5 cut(s) 996, 1081, 1106, 1134, 1205
AcuI CTGAAG 2 cut(s) 394, 861
AfaI GTAC 3 cut(s) 95, 179, 399
AfeI AGCGCT 1 cut(s) 1099
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 8 cut(s) 208, 430, 531, 810, 1005, 1087, 1105, 1210
AhlI ACTAGT 1 cut(s) 1231
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 7 cut(s) 47, 166, 470, 632, 848, 878, 1200
AluI AGCT 7 cut(s) 47, 166, 470, 632, 848, 878, 1200
Alw26I GTCTC 2 cut(s) 399, 881
AlwI GGATC 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 1099
AoxI GGCC 5 cut(s) 60, 74, 950, 1009, 1052
ApeKI GCWGC 4 cut(s) 145, 355, 827, 875
ApoI RAATTY 5 cut(s) 996, 1081, 1106, 1134, 1205
ArsI GACNNNNNNTTYG 4 cut(s) 201, 233, 1098, 1130
Asp700I GAANNNNTTC 2 cut(s) 1047, 1275
Asp718I GGTACC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 1100
AspS9I GGNCC 2 cut(s) 1009, 1127
AsuHPI GGTGA 2 cut(s) 1043, 1246
AvaII GGWCC 1 cut(s) 1127
BalI TGGCCA 1 cut(s) 952
BanI GGYRCC 2 cut(s) 93, 563
BbsI GAAGAC 2 cut(s) 374, 1268
BbvI GCAGC 4 cut(s) 132, 342, 839, 887
BccI CCATC 4 cut(s) 317, 335, 950, 1056
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 730, 764
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 399, 881
BcuI ACTAGT 1 cut(s) 1231
BfaI CTAG 3 cut(s) 197, 560, 1232
BfoI RGCGCY 1 cut(s) 1101
BfuAI ACCTGC 2 cut(s) 300, 485
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 4 cut(s) 146, 356, 828, 876
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 4 cut(s) 147, 357, 829, 877
BmcAI AGTACT 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 1127
BmgT120I GGNCC 2 cut(s) 1009, 1127
BmiI GGNNCC 3 cut(s) 95, 565, 677
BmsI GCATC 6 cut(s) 157, 367, 561, 610, 910, 1027
BpiI GAAGAC 2 cut(s) 374, 1268
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu1102I GCTNAGC 1 cut(s) 162
Bsa29I ATCGAT 1 cut(s) 1266
BsaBI GATNNNNATC 1 cut(s) 1172
BsaJI CCNNGG 2 cut(s) 140, 522
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 2 cut(s) 76, 689
Bse3DI GCAATG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 1172
BseCI ATCGAT 1 cut(s) 1266
BseDI CCNNGG 2 cut(s) 140, 522
BseGI GGATG 3 cut(s) 346, 925, 1020
BseJI GATNNNNATC 1 cut(s) 1172
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 4 cut(s) 153, 392, 876, 907
BseXI GCAGC 4 cut(s) 132, 342, 839, 887
BshFI GGCC 5 cut(s) 62, 76, 952, 1011, 1054
BshNI GGYRCC 2 cut(s) 93, 563
BshVI ATCGAT 1 cut(s) 1266
BsiSI CCGG 4 cut(s) 77, 108, 690, 1012
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 399, 881
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 5 cut(s) 62, 76, 952, 1011, 1054
Bsp143I GATC 4 cut(s) 229, 310, 666, 1173
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 1 cut(s) 673
BspANI GGCC 5 cut(s) 62, 76, 952, 1011, 1054
BspCNI CTCAG 4 cut(s) 154, 393, 877, 906
BspDI ATCGAT 1 cut(s) 1266
BspLI GGNNCC 3 cut(s) 95, 565, 677
BspMI ACCTGC 2 cut(s) 300, 485
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 93, 563
BsrDI GCAATG 1 cut(s) 684
BsrFI RCCGGY 2 cut(s) 76, 689
BssAI RCCGGY 2 cut(s) 76, 689
BssECI CCNNGG 2 cut(s) 140, 522
BssMI GATC 4 cut(s) 229, 310, 666, 1173
BssNAI GTATAC 1 cut(s) 991
BssT1I CCWWGG 2 cut(s) 140, 522
Bst1107I GTATAC 1 cut(s) 991
Bst4CI ACNGT 4 cut(s) 34, 115, 226, 910
Bst6I CTCTTC 1 cut(s) 1038
BstC8I GCNNGC 6 cut(s) 78, 168, 172, 454, 691, 743
BstDEI CTNAG 5 cut(s) 162, 401, 851, 885, 893
BstF5I GGATG 3 cut(s) 346, 925, 1020
BstH2I RGCGCY 1 cut(s) 1101
BstHHI GCGC 1 cut(s) 1100
BstKTI GATC 4 cut(s) 232, 313, 669, 1176
BstMAI GTCTC 2 cut(s) 399, 881
BstMBI GATC 4 cut(s) 229, 310, 666, 1173
BstMWI GCNNNNNNNGC 2 cut(s) 167, 629
BstNSI RCATGY 2 cut(s) 174, 215
BstV1I GCAGC 4 cut(s) 132, 342, 839, 887
BstV2I GAAGAC 2 cut(s) 374, 1268
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 229
BstZ17I GTATAC 1 cut(s) 991
Bsu15I ATCGAT 1 cut(s) 1266
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 5 cut(s) 62, 76, 952, 1011, 1054
BsuTUI ATCGAT 1 cut(s) 1266
BtsCI GGATG 3 cut(s) 346, 925, 1020
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 2 cut(s) 300, 485
Cac8I GCNNGC 6 cut(s) 78, 168, 172, 454, 691, 743
CfoI GCGC 1 cut(s) 1100
Cfr10I RCCGGY 2 cut(s) 76, 689
Cfr13I GGNCC 2 cut(s) 1009, 1127
ClaI ATCGAT 1 cut(s) 1266
Csp6I GTAC 3 cut(s) 94, 178, 398
CviAII CATG 6 cut(s) 171, 212, 568, 720, 872, 1280
CviQI GTAC 3 cut(s) 94, 178, 398
DdeI CTNAG 5 cut(s) 162, 401, 851, 885, 893
DpnI GATC 4 cut(s) 231, 312, 668, 1175
DpnII GATC 4 cut(s) 229, 310, 666, 1173
EaeI YGGCCR 4 cut(s) 60, 74, 950, 1052
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
Eco130I CCWWGG 2 cut(s) 140, 522
Eco32I GATATC 3 cut(s) 496, 655, 946
Eco47I GGWCC 1 cut(s) 1127
Eco47III AGCGCT 1 cut(s) 1099
Eco57I CTGAAG 2 cut(s) 394, 861
EcoRV GATATC 3 cut(s) 496, 655, 946
EcoT14I CCWWGG 2 cut(s) 140, 522
ErhI CCWWGG 2 cut(s) 140, 522
FaeI CATG 6 cut(s) 174, 215, 571, 723, 875, 1283
FalI AAGNNNNNCTT 4 cut(s) 621, 653, 834, 866
FaqI GGGAC 1 cut(s) 359
FatI CATG 6 cut(s) 170, 211, 567, 719, 871, 1279
FblI GTMKAC 2 cut(s) 219, 990
Fnu4HI GCNGC 4 cut(s) 146, 356, 828, 876
FokI GGATG 3 cut(s) 353, 932, 1027
Fsp4HI GCNGC 4 cut(s) 146, 356, 828, 876
FspBI CTAG 3 cut(s) 197, 560, 1232
GlaI GCGC 1 cut(s) 1099
GluI GCNGC 4 cut(s) 146, 356, 828, 876
HaeII RGCGCY 1 cut(s) 1101
HaeIII GGCC 5 cut(s) 62, 76, 952, 1011, 1054
HapII CCGG 4 cut(s) 77, 108, 690, 1012
HhaI GCGC 1 cut(s) 1100
Hin1II CATG 6 cut(s) 174, 215, 571, 723, 875, 1283
Hin6I GCGC 1 cut(s) 1098
HinP1I GCGC 1 cut(s) 1098
HinfI GANTC 5 cut(s) 327, 485, 527, 541, 897
HpaII CCGG 4 cut(s) 77, 108, 690, 1012
HphI GGTGA 2 cut(s) 1043, 1246
Hpy166II GTNNAC 3 cut(s) 220, 991, 1254
Hpy188I TCNGA 4 cut(s) 310, 798, 896, 940
Hpy188III TCNNGA 5 cut(s) 538, 573, 661, 679, 1210
Hpy8I GTNNAC 3 cut(s) 220, 991, 1254
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 1 cut(s) 1265
HpyCH4III ACNGT 4 cut(s) 34, 115, 226, 910
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 629
HpyF3I CTNAG 5 cut(s) 162, 401, 851, 885, 893
Hsp92II CATG 6 cut(s) 174, 215, 571, 723, 875, 1283
HspAI GCGC 1 cut(s) 1098
KpnI GGTACC 1 cut(s) 97
KroI GCCGGC 2 cut(s) 76, 689
KroNI GCCGGC 2 cut(s) 78, 691
Kzo9I GATC 4 cut(s) 229, 310, 666, 1173
Lsp1109I GCAGC 4 cut(s) 132, 342, 839, 887
LweI GCATC 6 cut(s) 157, 367, 561, 610, 910, 1027
MaeI CTAG 3 cut(s) 197, 560, 1232
MaeIII GTNAC 2 cut(s) 472, 1217
MalI GATC 4 cut(s) 231, 312, 668, 1175
MboI GATC 4 cut(s) 229, 310, 666, 1173
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 952
MluCI AATT 8 cut(s) 133, 459, 996, 1081, 1106, 1134, 1205, 1237
MluNI TGGCCA 1 cut(s) 952
MlyI GAGTC 1 cut(s) 891
MnlI CCTC 4 cut(s) 84, 108, 1268, 1300
Mox20I TGGCCA 1 cut(s) 952
MroNI GCCGGC 2 cut(s) 76, 689
MroXI GAANNNNTTC 2 cut(s) 1047, 1275
MscI TGGCCA 1 cut(s) 952
MseI TTAA 2 cut(s) 1119, 1284
MslI CAYNNNNRTG 2 cut(s) 1266, 1284
Msp20I TGGCCA 1 cut(s) 952
MspI CCGG 4 cut(s) 77, 108, 690, 1012
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 167, 629
NaeI GCCGGC 2 cut(s) 78, 691
NdeII GATC 4 cut(s) 229, 310, 666, 1173
NgoMIV GCCGGC 2 cut(s) 76, 689
NlaIII CATG 6 cut(s) 174, 215, 571, 723, 875, 1283
NlaIV GGNNCC 3 cut(s) 95, 565, 677
NmeAIII GCCGAG 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 1217
NspI RCATGY 2 cut(s) 174, 215
PaeI GCATGC 1 cut(s) 174
PctI GAATGC 1 cut(s) 300
PdiI GCCGGC 2 cut(s) 78, 691
PdmI GAANNNNTTC 2 cut(s) 1047, 1275
PfeI GAWTC 4 cut(s) 327, 485, 527, 541
PkrI GCNGC 4 cut(s) 147, 357, 829, 877
PleI GAGTC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 891
PspN4I GGNNCC 3 cut(s) 95, 565, 677
PspPI GGNCC 2 cut(s) 1009, 1127
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 3 cut(s) 95, 179, 399
RsaNI GTAC 3 cut(s) 94, 178, 398
RseI CAYNNNNRTG 2 cut(s) 1266, 1284
SaqAI TTAA 2 cut(s) 1119, 1284
SatI GCNGC 4 cut(s) 146, 356, 828, 876
Sau3AI GATC 4 cut(s) 229, 310, 666, 1173
Sau96I GGNCC 2 cut(s) 1009, 1127
ScaI AGTACT 1 cut(s) 399
SchI GAGTC 1 cut(s) 891
SfaNI GCATC 6 cut(s) 157, 367, 561, 610, 910, 1027
SinI GGWCC 1 cut(s) 1127
SmiMI CAYNNNNRTG 2 cut(s) 1266, 1284
SpeI ACTAGT 1 cut(s) 1231
SphI GCATGC 1 cut(s) 174
Sse9I AATT 8 cut(s) 133, 459, 996, 1081, 1106, 1134, 1205, 1237
SsiI CCGC 1 cut(s) 673
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 197, 560, 1232
StyI CCWWGG 2 cut(s) 140, 522
TaaI ACNGT 4 cut(s) 34, 115, 226, 910
TaqI TCGA 3 cut(s) 555, 750, 1266
TasI AATT 8 cut(s) 133, 459, 996, 1081, 1106, 1134, 1205, 1237
TatI WGTACW 2 cut(s) 177, 397
TfiI GAWTC 4 cut(s) 327, 485, 527, 541
Tru1I TTAA 2 cut(s) 1119, 1284
Tru9I TTAA 2 cut(s) 1119, 1284
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 1217
TseI GCWGC 4 cut(s) 145, 355, 827, 875
Tsp45I GTSAC 1 cut(s) 1217
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 1127
XapI RAATTY 5 cut(s) 996, 1081, 1106, 1134, 1205
XceI RCATGY 2 cut(s) 174, 215
XmiI GTMKAC 2 cut(s) 219, 990
XmnI GAANNNNTTC 2 cut(s) 1047, 1275
XspI CTAG 3 cut(s) 197, 560, 1232
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.