Rorug02G0378200

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
48337145 .. 48337799
655 bp
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UTR
Exon/CDS
Intron
Rorug02G0378200.1

Sequence Viewer

Length: 363 bp
ATGTCTCCTGTGCTAAGCTCTCAAGGTCTGGTCTTAGCAACCGCCATGGCTATCTCTAGCACCCTCGTCTTTCTTGCTTTCTCCAGAAAACAAACCCTCCCAGAACCCCAGAACGCAACAAAGCAAAGTTCTACTCTGCGGTCTTGCTTGTCTTCAGGTGATAAGAAGAGGGATGGAAAGAAAAAGAAAGTGCGTTTTGCTGAGAATGTTGAGGAGGAAAAGATGGTAGAGAGAGTTATGGAGTCGTCGTCGTCGTCTAAAAGAGTCGAAAAAAGTTGCAGAAACCAAATTCCTCAGAATCGAGTTGCCTTGTACAATGGAATTCGTAGAGACCGGGTGCAGAGGATGGCGTGTTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.49

Weight (kDa)

10.2

Isoelectric Point (pI)

83.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 139
AcsI RAATTY 2 cut(s) 288, 321
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 314
AloI GAACNNNNNNTCC 1 cut(s) 337
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 9, 324
ApoI RAATTY 2 cut(s) 288, 321
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 144
BccI CCATC 3 cut(s) 167, 217, 340
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 9, 324
BfaI CTAG 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 233, 263
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 178, 351
BseMII CTCAG 2 cut(s) 192, 308
BseRI GAGGAG 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 9, 324
Bso31I GGTCTC 1 cut(s) 324
Bsp1407I TGTACA 1 cut(s) 312
Bsp1720I GCTNAGC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 42, 139
BspCNI CTCAG 2 cut(s) 193, 307
BspTNI GGTCTC 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 14, 34, 201, 294
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 178, 351
BstMAI GTCTC 2 cut(s) 9, 324
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 178, 351
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 46
CviJI RGCY 2 cut(s) 18, 50
CviKI_1 RGCY 2 cut(s) 18, 50
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 4 cut(s) 14, 34, 201, 294
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 239, 358
FatI CATG 1 cut(s) 45
FokI GGATG 2 cut(s) 185, 358
FspBI CTAG 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 67
HapII CCGG 1 cut(s) 334
Hin1II CATG 1 cut(s) 49
HinfI GANTC 3 cut(s) 242, 264, 298
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 84
Hpy99I CGWCG 3 cut(s) 250, 253, 256
HpyCH4V TGCA 2 cut(s) 279, 340
HpyF3I CTNAG 4 cut(s) 14, 34, 201, 294
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 7 cut(s) 14, 21, 97, 114, 122, 141, 347
MaeI CTAG 1 cut(s) 57
MboII GAAGA 2 cut(s) 144, 178
MluCI AATT 2 cut(s) 288, 321
MlyI GAGTC 2 cut(s) 251, 273
MnlI CCTC 7 cut(s) 74, 107, 162, 205, 208, 303, 336
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PfeI GAWTC 1 cut(s) 298
PleI GAGTC 2 cut(s) 250, 272
PpsI GAGTC 2 cut(s) 250, 272
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SchI GAGTC 2 cut(s) 251, 273
ScrFI CCNGG 1 cut(s) 335
SetI ASST 3 cut(s) 20, 28, 160
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 2 cut(s) 288, 321
SsiI CCGC 2 cut(s) 42, 139
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 45
TaqI TCGA 2 cut(s) 267, 301
TasI AATT 2 cut(s) 288, 321
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 345
XapI RAATTY 2 cut(s) 288, 321
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.