Rorug01G0216600

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
30964543 .. 30973854
9312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216600.1

Sequence Viewer

Length: 3432 bp
ATGGGGAGAGGTAGAAAGCGGTCGAGGAAAACCGCAGAGATTGGGGGTGAGGGCATTTTGGGAAATCAAAATTATAGGACCAAACGGGAGGGAGGTGAAGGGAGTTGGGATTCTCCGAGCTTGAGGAAGAGGAAGAGAGAAGGTGAAGCTGGAGGGTCATGTTCTAAGAAGAAATGTACTCAGGGCTCAAATTGGGTCAATTGGAAGTCTTCAATGTGCCATCAGTGTCAGAGGAATGACAGGGCCAGAGTTGTCAACTGCACAAGTTGTAAGCGGAAGCGATTTTGTGTATCTTGCATTCAGAATTGGTATCCGCAGATGTCAGAGGAGGCTATTGCTGACACTTGTCCTGTATGCCTTGGAAATTGCAATTGCAAAGCGTGCTTGCGTTTAGATGAAACTAATCATAATTTGAATAGCAAGCTTGCATTGCACGTTAGCAAAAATGAAGAACTGGAGCACTCTAAGTATTTGCTTGAAGCATTGCTTCCATTCTTGAAAAGACTTAATGATGAACAAGTTATAGAGATGGTGATGGAGGCTAGAAGACAAGGGAAATCTCTTTCGGAGCTAAAGATCCAAAGGTCGGACAGCTCTCCTGATGATCGTGTATACTGCGACAACTGCAATACATCTATTATTGATTTCCACAGAAGCTGTCCTATATGTTCATATGACCTTTGTCTTATCTGCTGCCGGGAGATTCGAGATGGAAACCTGCAAGAAAGTGCAGAAGAAGTGATTGGGGAGTATATCAATCGAGGTCTAGACTATTTACATGGTGGAAAGGGCAACTTAATCAAAGGGCCTTCTGAAACTAAACTCAAGTGTCCTGTAAGGTCAACATCTAAGTGGAAAGTAAGCAAAGATCAAAGTATTTTTTGCCCCTCAAAAGACATGGACGGCTGTGGTTGTAGTGTTCTAGAACTGAGATGCATATTATCTGAAAACCACATCAGGGAGTTGGTAGAAAAAGCAGAAGAAATTGCAGAAACTGAAAAACTGATGTATGCAGCTGGACCTTCTGCACAGAAGTTTTCATGGTTCAACTCTGCTGGTGGTGCTGACTCAAGAAGCAATGAATTGACGAAAGCAGCTTCTCGAGAGGATTCGGAGGACAACTACTTGTACAGTCCAAGGGCTAGAAATATCCAACATGAAGACTTTAAGCATTTTCGCTGTCATTGGATCCGGGGTGAGCCTGTGATTGTGGGGAATGTGCTTGAAACTGCAACAGGTTTGAGCTGGGAACCATTTGTCATGTGGCGTGCTTGTCGTCAGATGAGAAATACCGGGCATGATAGACATGTGGAATTTAAGGCCATCGATTGCTTGGATTGGTGCGAGCTAGATATCGGTATCCACCAATTTTTTACTGGATATTTGGAGGGCCAGTTTGATGGGAAAATGTGGCCTCGTATTCTGAAACTCAACGATCGGTCCCTTGATGATTATTTGGAGAAGCGCCTTCCTCGTCATTGTGCTGAGTTTATTTGTTGCTTGCCATTTAAGGAATATACCCATCCTCGCAGTGGCCTCCTGAACCTTGCTGTAAAATTGCCTATGGAGTGTGTAAAGCCAGACATGGGGCCAAAAATGGATATTGCTTATGGTGTGTCCCAGGAGCTTGGACGTGGAGATTCAGTAACTAAGCTTCACTGTGATTCATGTGATGTGGTGAATGTTTTGACACATACTGCTGAAGTGATGATTACTGCTGAGCAACTTTGTACTATAGAAGAGTTGAAAAAAGAGCACATTGAACAAGACCGAAGGGAAATGTTTGAAAATTATGAGACTGTGGATGACAATGTTGATCATAAGGAGTCTGGCAGTGGGTCTTGTGTCAGGACTGCAAAGGGTAAACAATGTTGTACTCAAGTTAAGAATCAAAACAGGGTTGCAACTTTTCAAGAAAAGACTAAAGCGGCTGTTCAAACTGATAGTTGGAATGGTGGAAATTTTTCGAAGGAATCCATGTCTGCAAAGAATGCAGAGGGAGGTGCTTTATGGGACATTTTTCGACGACAGGATGTTCCTAAGCTGCAGGAATATCTATGGAAACACTACAAGGAATTCAGGCACACCTACTGTTGTCCATTGCAGCAGGTTACTCATCCCATACATGATCAGACTTTTTATCTGACATTAGAGCACAAGAGGAAGCTGAAGGAAGAATATGGAATTGAACCATGGACATTTATCCAGAAACTTGGAGATGCTGTCTTTATTCCTGCAGGATGTCCACACCAAGTTAGAAACTTGAAGTCGTGCATTAAAGTTTCTGTTGAATTTGTCTCCCCTGAAAATGTTGGTGAGTGCTTACGTCTGACAGATGAGTTCCGCACACTTCCACGAAAGCATATAGCTAAAGAGGACAAATTGGAGGTGAAGAAAATGATTGTTCATGCTGTACATGAGGCTGTGGAGATTTTGGATCAGAATGTGAGGTTATGTAGCACTAAAAATTTCAGGGGAGAGAAGCCTTCACAGCCCCCTGTTAATATATGTAAGGGTAACATTGCAAACAAATCGAGAGAGAAAGCAGCTAGGGGACGACCACTAGAAGGAAGGGCAGAATTGAAAGAGGTTCAAATTCTTGAGGAGCAGGCTTCACAATTATCACAACCTATACAGCCCACTATTGATGTTGGTAGATTTGGAAGTACACGGAGAGAGGAAAAAGATGGAGGGCAACCACAAGAAGCAAGTAGAGTAGATGAAGAGGTCCAAATTCTTAAGGGGCAGCCTTCACAGTCAGCACAGCATGTACAGCCCACTGCTTATGTTGATAGGAAGCATACAATGAGAAAGGAAACAGAGGGAGGGGTACTGCAAGAAACACATGGAGAAGTTGAAGACGTCCAAATTCTTGAGAAGCGGCCTTGGCAATCATCACAAACTGTACAAGCAGCCCTTCATGTTGTTAGCATTGAACATGCATCTAGAGAGGAAAAAGCTGGATGGCGACCACAAACTTGTGGAGAAGATGAAGAAGTCCAAATTCTTGAGGAGCAGCATTGGCAATCATCACAATCTGTACAAGCAACTCTTCACATTGGTAGCATTGGACATGCACTGAGAGAGGAAAAAGTGGGAGAACGACAGCATGAAGGAAAGGGAGAACAGGAAGAGGTCCGAAATCTTGGTGAGAAGCCTTCAAAGTTATCACAACTTGAACCTGTCCAGCCCACTGTTGATGTTGATAAAGCGGTGCAGCATCTGGATGAGCTCGTGGAGCTCCTTCGACATTTTGAACAGGGGAGGATGCCGATGGGAGGGAGAGATGGAAGAATCAGTTCTCAATTCCAGCTTTTATGCTCGGAGTTCTTGACTTTATCTTTGCATCTTGGTTATTCACCTAACGATACAAAACCTCACATTACACCATCTGCTCAGCAACTACATGATCCTCCAGTTGTAGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1143

Amino Acids

130.09

Weight (kDa)

6.48

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 664 - 765 3.5e-14 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2865
Acc36I ACCTGC 2 cut(s) 726, 2098
AccI GTMKAC 1 cut(s) 612
AciI CCGC 8 cut(s) 19, 33, 274, 314, 1928, 2344, 2881, 3212
AclWI GGATC 5 cut(s) 571, 1183, 1196, 2445, 3404
AcsI RAATTY 9 cut(s) 1313, 1960, 2075, 2291, 2467, 2595, 2733, 2868, 3003
AcuI CTGAAG 2 cut(s) 1722, 2189
AcyI GRCGYC 1 cut(s) 2862
AfiI CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
AflII CTTAAG 1 cut(s) 2738
AflIII ACRYGT 1 cut(s) 1306
AjiI CACGTC 1 cut(s) 1634
AjnI CCWGG 1 cut(s) 1620
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
Alw21I GWGCWC 5 cut(s) 462, 1758, 2157, 3234, 3243
Alw26I GTCTC 2 cut(s) 1790, 2302
AlwI GGATC 5 cut(s) 571, 1183, 1196, 2445, 3404
AlwNI CAGNNNCTG 3 cut(s) 657, 995, 3223
Ama87I CYCGRG 1 cut(s) 1101
AoxI GGCC 8 cut(s) 243, 806, 1320, 1390, 1412, 1534, 1589, 2882
ApoI RAATTY 9 cut(s) 1313, 1960, 2075, 2291, 2467, 2595, 2733, 2868, 3003
ArsI GACNNNNNNTTYG 2 cut(s) 3325, 3357
Asp700I GAANNNNTTC 2 cut(s) 1963, 3298
AspLEI GCGC 1 cut(s) 1467
AspS9I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
AsuC2I CCSGG 3 cut(s) 698, 1193, 1294
AsuII TTCGAA 1 cut(s) 1967
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
BamHI GGATCC 1 cut(s) 1188
BanII GRGCYC 3 cut(s) 188, 3234, 3243
BarI GAAGNNNNNNTAC 2 cut(s) 1638, 1670
BauI CACGAG 1 cut(s) 3233
BbsI GAAGAC 4 cut(s) 201, 553, 1167, 2865
Bbv12I GWGCWC 5 cut(s) 462, 1758, 2157, 3234, 3243
BceAI ACGGC 1 cut(s) 919
BcgI CGANNNNNNTGC 2 cut(s) 2514, 2548
BciT130I CCWGG 1 cut(s) 1622
BciVI GTATCC 2 cut(s) 321, 1370
BclI TGATCA 2 cut(s) 1816, 2128
BcnI CCSGG 3 cut(s) 698, 1193, 1294
BcoDI GTCTC 2 cut(s) 1790, 2302
BfaI CTAG 8 cut(s) 543, 767, 923, 1143, 1349, 2550, 2564, 2946
BfmI CTRYAG 3 cut(s) 1734, 2045, 2235
BfoI RGCGCY 1 cut(s) 1468
BfrI CTTAAG 1 cut(s) 2738
BfuAI ACCTGC 2 cut(s) 726, 2098
BfuI GTATCC 2 cut(s) 321, 1370
BglII AGATCT 1 cut(s) 3424
BlpI GCTNAGC 2 cut(s) 1719, 3396
Bme1390I CCNGG 4 cut(s) 698, 1193, 1294, 1622
Bme18I GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
BmeT110I CYCGRG 1 cut(s) 1101
BmgBI CACGTC 1 cut(s) 1634
BmgT120I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
BmiI GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
BmrFI CCNGG 4 cut(s) 698, 1193, 1294, 1622
BmsI GCATC 6 cut(s) 923, 2209, 2951, 3229, 3258, 3355
BoxI GACNNNNGTC 2 cut(s) 345, 681
BpiI GAAGAC 4 cut(s) 201, 553, 1167, 2865
BpmI CTGGAG 3 cut(s) 171, 476, 3399
Bpu10I CCTNAGC 1 cut(s) 2040
Bpu1102I GCTNAGC 2 cut(s) 1719, 3396
Bpu14I TTCGAA 1 cut(s) 1967
BpuEI CTTGAG 7 cut(s) 142, 809, 1054, 1863, 2621, 2894, 3029
BpuMI CCSGG 3 cut(s) 698, 1193, 1294
Bsa29I ATCGAT 1 cut(s) 1326
BsaHI GRCGYC 1 cut(s) 2862
BsaJI CCNNGG 6 cut(s) 358, 1136, 1192, 1620, 2192, 2885
BsaXI ACNNNNNCTCC 6 cut(s) 1379, 1409, 1629, 1659, 2208, 2238
Bsc4I CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
Bse1I ACTGG 4 cut(s) 459, 1381, 1393, 3416
Bse3DI GCAATG 5 cut(s) 428, 482, 1084, 2099, 2520
BseBI CCWGG 1 cut(s) 1622
BseCI ATCGAT 1 cut(s) 1326
BseDI CCNNGG 6 cut(s) 358, 1136, 1192, 1620, 2192, 2885
BseGI GGATG 8 cut(s) 1522, 1810, 2038, 2116, 2246, 2969, 3232, 3273
BseLI CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
BseMI GCAATG 5 cut(s) 428, 482, 1084, 2099, 2520
BseMII CTCAG 6 cut(s) 194, 920, 1476, 1710, 3071, 3410
BseNI ACTGG 4 cut(s) 459, 1381, 1393, 3416
BseRI GAGGAG 3 cut(s) 341, 2618, 3026
BseYI CCCAGC 1 cut(s) 1245
BsgI GTGCAG 4 cut(s) 244, 750, 1011, 3236
Bsh1285I CGRYCG 2 cut(s) 23, 1438
BshFI GGCC 8 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591, 2884
BshVI ATCGAT 1 cut(s) 1326
BsiEI CGRYCG 2 cut(s) 23, 1438
BsiHKAI GWGCWC 5 cut(s) 462, 1758, 2157, 3234, 3243
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 3 cut(s) 697, 1192, 1293
BslFI GGGAC 4 cut(s) 1426, 1603, 2027, 2568
BslI CCNNNNNNNGG 6 cut(s) 586, 958, 1532, 1586, 2567, 3278
BsmAI GTCTC 2 cut(s) 1790, 2302
BsmFI GGGAC 4 cut(s) 1426, 1603, 2027, 2568
BsmI GAATGC 2 cut(s) 297, 1996
BsnI GGCC 8 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591, 2884
BsoBI CYCGRG 1 cut(s) 1101
Bsp119I TTCGAA 1 cut(s) 1967
Bsp1286I GDGCHC 6 cut(s) 188, 462, 1758, 2157, 3234, 3243
Bsp1407I TGTACA 5 cut(s) 1128, 2413, 2770, 2905, 3040
Bsp1720I GCTNAGC 2 cut(s) 1719, 3396
Bsp19I CCATGG 1 cut(s) 2192
BspACI CCGC 8 cut(s) 19, 33, 274, 314, 1928, 2344, 2881, 3212
BspANI GGCC 8 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591, 2884
BspCNI CTCAG 6 cut(s) 193, 921, 1477, 1711, 3072, 3409
BspDI ATCGAT 1 cut(s) 1326
BspLI GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
BspMAI CTGCAG 2 cut(s) 2049, 2239
BspMI ACCTGC 2 cut(s) 726, 2098
BspPI GGATC 5 cut(s) 571, 1183, 1196, 2445, 3404
BspT104I TTCGAA 1 cut(s) 1967
BspTI CTTAAG 1 cut(s) 2738
BsrDI GCAATG 5 cut(s) 428, 482, 1084, 2099, 2520
BsrGI TGTACA 5 cut(s) 1128, 2413, 2770, 2905, 3040
BsrI ACTGG 4 cut(s) 459, 1381, 1393, 3416
BssECI CCNNGG 6 cut(s) 358, 1136, 1192, 1620, 2192, 2885
BssNAI GTATAC 1 cut(s) 613
BssNI GRCGYC 1 cut(s) 2862
BssSI CACGAG 1 cut(s) 3233
BssT1I CCWWGG 4 cut(s) 358, 1136, 2192, 2885
Bst1107I GTATAC 1 cut(s) 613
Bst2BI CACGAG 1 cut(s) 3233
Bst2UI CCWGG 1 cut(s) 1622
Bst4CI ACNGT 7 cut(s) 1133, 1661, 1801, 2093, 2757, 2905, 3196
Bst6I CTCTTC 6 cut(s) 122, 128, 1734, 2718, 3057, 3126
BstACI GRCGYC 1 cut(s) 2862
BstAFI CTTAAG 1 cut(s) 2738
BstAPI GCANNNNNTGC 2 cut(s) 381, 1991
BstAUI TGTACA 5 cut(s) 1128, 2413, 2770, 2905, 3040
BstBI TTCGAA 1 cut(s) 1967
BstC8I GCNNGC 8 cut(s) 382, 386, 422, 426, 1269, 1346, 1502, 2610
BstDSI CCRYGG 1 cut(s) 2192
BstF5I GGATG 8 cut(s) 1522, 1810, 2038, 2116, 2246, 2969, 3232, 3273
BstH2I RGCGCY 1 cut(s) 1468
BstHHI GCGC 1 cut(s) 1467
BstMAI GTCTC 2 cut(s) 1790, 2302
BstMCI CGRYCG 2 cut(s) 23, 1438
BstNI CCWGG 1 cut(s) 1622
BstNSI RCATGY 4 cut(s) 1310, 2771, 2942, 3077
BstPAI GACNNNNGTC 2 cut(s) 345, 681
BstSCI CCNGG 4 cut(s) 696, 1191, 1292, 1620
BstSFI CTRYAG 3 cut(s) 1734, 2045, 2235
BstV2I GAAGAC 4 cut(s) 201, 553, 1167, 2865
BstX2I RGATCY 3 cut(s) 576, 1188, 3424
BstXI CCANNNNNNTGG 3 cut(s) 1400, 1628, 2213
BstYI RGATCY 3 cut(s) 576, 1188, 3424
BstZ17I GTATAC 1 cut(s) 613
Bsu15I ATCGAT 1 cut(s) 1326
BsuI GTATCC 2 cut(s) 321, 1370
BsuRI GGCC 8 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591, 2884
BsuTUI ATCGAT 1 cut(s) 1326
BtgI CCRYGG 1 cut(s) 2192
BtrI CACGTC 1 cut(s) 1634
BtsCI GGATG 8 cut(s) 1522, 1810, 2038, 2116, 2246, 2969, 3232, 3273
BtsI GCAGTG 3 cut(s) 1537, 1840, 2778
BtsIMutI CAGTG 7 cut(s) 230, 1537, 1657, 1840, 2778, 3077, 3192
BveI ACCTGC 2 cut(s) 726, 2098
Cac8I GCNNGC 8 cut(s) 382, 386, 422, 426, 1269, 1346, 1502, 2610
CaiI CAGNNNCTG 3 cut(s) 657, 995, 3223
CfoI GCGC 1 cut(s) 1467
Cfr13I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
ClaI ATCGAT 1 cut(s) 1326
Eam1104I CTCTTC 6 cut(s) 122, 128, 1734, 2718, 3057, 3126
EarI CTCTTC 6 cut(s) 122, 128, 1734, 2718, 3057, 3126
Ecl136II GAGCTC 2 cut(s) 3232, 3241
Eco130I CCWWGG 4 cut(s) 358, 1136, 2192, 2885
Eco24I GRGCYC 3 cut(s) 188, 3234, 3243
Eco32I GATATC 1 cut(s) 1354
Eco47I GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
Eco53kI GAGCTC 2 cut(s) 3232, 3241
Eco57I CTGAAG 2 cut(s) 1722, 2189
Eco88I CYCGRG 1 cut(s) 1101
EcoICRI GAGCTC 2 cut(s) 3232, 3241
EcoO109I RGGNCCY 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 2075
EcoRII CCWGG 1 cut(s) 1620
EcoRV GATATC 1 cut(s) 1354
EcoT14I CCWWGG 4 cut(s) 358, 1136, 2192, 2885
EcoT22I ATGCAT 2 cut(s) 938, 2944
EcoT38I GRGCYC 3 cut(s) 188, 3234, 3243
ErhI CCWWGG 4 cut(s) 358, 1136, 2192, 2885
FalI AAGNNNNNCTT 8 cut(s) 471, 503, 779, 811, 2901, 2933, 3036, 3068
FaqI GGGAC 4 cut(s) 1426, 1603, 2027, 2568
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 2 cut(s) 1816, 2128
FblI GTMKAC 1 cut(s) 612
FokI GGATG 8 cut(s) 1509, 1817, 2045, 2103, 2253, 2976, 3239, 3280
FriOI GRGCYC 3 cut(s) 188, 3234, 3243
FspBI CTAG 8 cut(s) 543, 767, 923, 1143, 1349, 2550, 2564, 2946
GlaI GCGC 1 cut(s) 1466
GsaI CCCAGC 1 cut(s) 1249
GsuI CTGGAG 3 cut(s) 171, 476, 3399
HaeII RGCGCY 1 cut(s) 1468
HaeIII GGCC 8 cut(s) 245, 808, 1322, 1392, 1414, 1536, 1591, 2884
HapII CCGG 3 cut(s) 697, 1192, 1293
HhaI GCGC 1 cut(s) 1467
Hin1I GRCGYC 1 cut(s) 2862
Hin6I GCGC 1 cut(s) 1465
HinP1I GCGC 1 cut(s) 1465
HincII GTYRAC 2 cut(s) 256, 843
HindII GTYRAC 2 cut(s) 256, 843
HindIII AAGCTT 2 cut(s) 422, 1652
HpaII CCGG 3 cut(s) 697, 1192, 1293
Hpy166II GTNNAC 6 cut(s) 256, 613, 843, 1865, 2246, 2669
Hpy8I GTNNAC 6 cut(s) 256, 613, 843, 1865, 2246, 2669
Hpy99I CGWCG 1 cut(s) 2028
HpyCH4III ACNGT 7 cut(s) 1133, 1661, 1801, 2093, 2757, 2905, 3196
HpyCH4IV ACGT 4 cut(s) 435, 1633, 2326, 2862
HpySE526I ACGT 4 cut(s) 435, 1633, 2326, 2862
Hsp92I GRCGYC 1 cut(s) 2862
HspAI GCGC 1 cut(s) 1465
Ksp22I TGATCA 2 cut(s) 1816, 2128
LmnI GCTCC 7 cut(s) 457, 568, 1624, 2605, 3013, 3238, 3246
LweI GCATC 6 cut(s) 923, 2209, 2951, 3229, 3258, 3355
MaeI CTAG 8 cut(s) 543, 767, 923, 1143, 1349, 2550, 2564, 2946
MaeII ACGT 4 cut(s) 435, 1633, 2326, 2862
MaeIII GTNAC 3 cut(s) 1645, 2110, 2516
MfeI CAATTG 2 cut(s) 199, 370
MflI RGATCY 3 cut(s) 576, 1188, 3424
MhlI GDGCHC 6 cut(s) 188, 462, 1758, 2157, 3234, 3243
MlyI GAGTC 2 cut(s) 1061, 1835
MmeI TCCRAC 3 cut(s) 567, 1177, 1928
Mph1103I ATGCAT 2 cut(s) 938, 2944
MroXI GAANNNNTTC 2 cut(s) 1963, 3298
MseI TTAA 9 cut(s) 507, 797, 1167, 1317, 1509, 1884, 2277, 2502, 2739
MslI CAYNNNNRTG 2 cut(s) 850, 3225
MspA1I CMGCKG 1 cut(s) 1016
MspCI CTTAAG 1 cut(s) 2738
MspI CCGG 3 cut(s) 697, 1192, 1293
MspR9I CCNGG 4 cut(s) 698, 1193, 1294, 1622
MunI CAATTG 2 cut(s) 199, 370
Mva1269I GAATGC 2 cut(s) 297, 1996
MvaI CCWGG 1 cut(s) 1622
NciI CCSGG 3 cut(s) 698, 1193, 1294
NcoI CCATGG 1 cut(s) 2192
NdeI CATATG 1 cut(s) 673
NlaIV GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
NsiI ATGCAT 2 cut(s) 938, 2944
NspI RCATGY 4 cut(s) 1310, 2771, 2942, 3077
NspV TTCGAA 1 cut(s) 1967
PaeR7I CTCGAG 1 cut(s) 1101
PciI ACATGT 1 cut(s) 1306
PctI GAATGC 2 cut(s) 297, 1996
PdmI GAANNNNTTC 2 cut(s) 1963, 3298
PfeI GAWTC 8 cut(s) 110, 703, 1109, 1640, 1664, 1888, 1973, 3294
Ple19I CGATCG 1 cut(s) 1438
PleI GAGTC 2 cut(s) 1061, 1834
PpsI GAGTC 2 cut(s) 1061, 1834
PscI ACATGT 1 cut(s) 1306
PshAI GACNNNNGTC 2 cut(s) 345, 681
Psp124BI GAGCTC 2 cut(s) 3234, 3243
Psp6I CCWGG 1 cut(s) 1620
PspFI CCCAGC 1 cut(s) 1245
PspGI CCWGG 1 cut(s) 1620
PspN4I GGNNCC 4 cut(s) 1190, 1251, 1442, 1590
PspPI GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
PstI CTGCAG 2 cut(s) 2049, 2239
PstNI CAGNNNCTG 3 cut(s) 657, 995, 3223
PsuI RGATCY 3 cut(s) 576, 1188, 3424
PvuI CGATCG 1 cut(s) 1438
PvuII CAGCTG 1 cut(s) 1016
RseI CAYNNNNRTG 2 cut(s) 850, 3225
SacI GAGCTC 2 cut(s) 3234, 3243
SaqAI TTAA 9 cut(s) 507, 797, 1167, 1317, 1509, 1884, 2277, 2502, 2739
Sau96I GGNCC 9 cut(s) 78, 243, 806, 1019, 1390, 1440, 1589, 2728, 3136
SbfI CCTGCAGG 1 cut(s) 2239
SchI GAGTC 2 cut(s) 1061, 1835
ScrFI CCNGG 4 cut(s) 698, 1193, 1294, 1622
SdaI CCTGCAGG 1 cut(s) 2239
SduI GDGCHC 6 cut(s) 188, 462, 1758, 2157, 3234, 3243
SfaNI GCATC 6 cut(s) 923, 2209, 2951, 3229, 3258, 3355
SfcI CTRYAG 3 cut(s) 1734, 2045, 2235
Sfr274I CTCGAG 1 cut(s) 1101
SfuI TTCGAA 1 cut(s) 1967
SinI GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
SlaI CTCGAG 1 cut(s) 1101
SmiMI CAYNNNNRTG 2 cut(s) 850, 3225
SmlI CTYRAG 9 cut(s) 121, 824, 1069, 1101, 1878, 2600, 2738, 2873, 3008
SmoI CTYRAG 9 cut(s) 121, 824, 1069, 1101, 1878, 2600, 2738, 2873, 3008
Sse8387I CCTGCAGG 1 cut(s) 2239
SsiI CCGC 8 cut(s) 19, 33, 274, 314, 1928, 2344, 2881, 3212
SspMI CTAG 8 cut(s) 543, 767, 923, 1143, 1349, 2550, 2564, 2946
SstI GAGCTC 2 cut(s) 3234, 3243
StyD4I CCNGG 4 cut(s) 696, 1191, 1292, 1620
StyI CCWWGG 4 cut(s) 358, 1136, 2192, 2885
TaaI ACNGT 7 cut(s) 1133, 1661, 1801, 2093, 2757, 2905, 3196
TaiI ACGT 4 cut(s) 438, 1636, 2329, 2865
TaqI TCGA 9 cut(s) 23, 706, 760, 1102, 1326, 1967, 2023, 2534, 3247
TaqII GACCGA 2 cut(s) 1428, 1785
TatI WGTACW 9 cut(s) 176, 1128, 1730, 1874, 2413, 2666, 2770, 2905, 3040
TauI GCSGC 2 cut(s) 1931, 2884
TfiI GAWTC 8 cut(s) 110, 703, 1109, 1640, 1664, 1888, 1973, 3294
Tru1I TTAA 9 cut(s) 507, 797, 1167, 1317, 1509, 1884, 2277, 2502, 2739
Tru9I TTAA 9 cut(s) 507, 797, 1167, 1317, 1509, 1884, 2277, 2502, 2739
TscAI CASTG 7 cut(s) 230, 1537, 1664, 1840, 2785, 3084, 3199
TspGWI ACGGA 1 cut(s) 2686
TspRI CASTG 7 cut(s) 230, 1537, 1664, 1840, 2785, 3084, 3199
Vha464I CTTAAG 1 cut(s) 2738
VpaK11BI GGWCC 5 cut(s) 78, 1019, 1440, 2728, 3136
XapI RAATTY 9 cut(s) 1313, 1960, 2075, 2291, 2467, 2595, 2733, 2868, 3003
XbaI TCTAGA 3 cut(s) 766, 922, 2945
XceI RCATGY 4 cut(s) 1310, 2771, 2942, 3077
XcmI CCANNNNNNNNNTGG 4 cut(s) 1260, 1330, 1373, 1529
XhoI CTCGAG 1 cut(s) 1101
XmiI GTMKAC 1 cut(s) 612
XmnI GAANNNNTTC 2 cut(s) 1963, 3298
XspI CTAG 8 cut(s) 543, 767, 923, 1143, 1349, 2550, 2564, 2946
ZraI GACGTC 1 cut(s) 2863
Zsp2I ATGCAT 2 cut(s) 938, 2944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.