MD07G1191000.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000239
Physical Location & Seq
Reverse (-)
27080576 .. 27082773
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1191000.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGAACAAAAGTACAAGAGGATTGTGTGTGTGTGAGAGAGAGCAAAGTCAAACCAACTTCATATACTACGGCATTTTGTCAGATCTTTTAGGAGACGGGATCTTTGCTGTGGATGGAGAAAAATGGCTGCATCAAAAAAAGGTATCGAGCAATGAATTAACAACCAAAATTGTGAAAGACTTCAGCAGTACAGTCTTCAAAACCAATGCAGTAAAACTTGCACGGATAATTTCTGAAGCTGCAACCTGCAACAAAGCAATTGAGATCCAAGAATTGTTTATGAAAGCAACCTTAGACTCAATCGTCAAGATTCTTCTTGGAATTGAACTAGACACCATGGACGGAACAAATGAAGAAGGTACTCGGTTTGCCCATGCTTTTGATGTAGCAAACGAAATGACCATCTATCGTTATGTTGATTTCTCGTGGAAGATCAAAAGGTTCTTAAACATTGGATCAGAAGCACTGCTAAGGAAGAATATCAAAGTGATAGATCAATTTGTTTGTAACTTAATCAAAATAAAGATTGAAACAGATAATTCATCAGAAGATGAGCTACTGGCAGTAAAGAAACAAGACATCATTTCAAGGCTTTTGGAATCTCAAGAGACCGATCCAAAGTACTTGAGAGACTTGATCCTTTGTCTCATTTCTGCCGGAAGAGATACAACGGCTAGCACTCTTACGTGGTTTATTTATATGCTATGCAAGCATCCTCATATACAAGAAAAGGTTGCACAAGAAGTTAGAGAGGCAACAAATCTGGAAGATAGTTCATGCATTGATGAGGTTGCTGCCAGCCTTACTGAAGAAGCTCTTGAAAAAATGCAGTATCTACATGCAGCTTTGTCTGAGACACTCAGGCTCTACCCTGCAGTTCCACTGAACGCGAAAGTTTGTTTAGCTGATGATACCTGGCCAGATGGATTTAGTGTCAAAAAAGGCAATTTTGTGGGATACCATGTTTACGGAATGGGCAGGATGAAATATCTGTGGGGTGATGATGCAAAAGAATTTCGGCCAGAGAGATGGCTCAACGAAAATGGTCTTTTCCAGCAAGAAAGCCCTTTCAAATTCACAGCTTTTAATGCGGGGCCAAGAATTTGTATAGGAAAGGACTTTGCCTATAGGCAGACAAAGCTCATCTGTGCCGTGCTTTTAGGGTGCTACAAATTCAAGCTGAGTGAAGAGAAGAAAGTGGCCCATTACTTGACCAAAATCAGCTTCCATATAGACGGGGGACTTTATGTGCATGCTTCTCCAAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

424

Amino Acids

48.12

Weight (kDa)

6.35

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 26 - 402 6.4e-64 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 254
AccII CGCG 1 cut(s) 890
AciI CCGC 1 cut(s) 1091
AclWI GGATC 5 cut(s) 107, 259, 463, 608, 631
AcoI YGGCCR 2 cut(s) 917, 1019
AcsI RAATTY 4 cut(s) 1013, 1073, 1101, 1172
AcuI CTGAAG 3 cut(s) 166, 255, 828
AfaI GTAC 4 cut(s) 13, 190, 361, 623
AgsI TTSAA 7 cut(s) 199, 326, 530, 588, 821, 1072, 1177
AjnI CCWGG 1 cut(s) 914
AjuI GAANNNNNNNTTGG 2 cut(s) 1208, 1240
AluBI AGCT 9 cut(s) 239, 556, 815, 845, 905, 1082, 1141, 1180, 1224
AluI AGCT 9 cut(s) 239, 556, 815, 845, 905, 1082, 1141, 1180, 1224
Alw26I GTCTC 5 cut(s) 87, 602, 624, 650, 848
AlwI GGATC 5 cut(s) 107, 259, 463, 608, 631
AoxI GGCC 4 cut(s) 917, 1019, 1094, 1200
ApeKI GCWGC 4 cut(s) 127, 239, 794, 842
ApoI RAATTY 4 cut(s) 1013, 1073, 1101, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 1094, 1201
AsuHPI GGTGA 1 cut(s) 1010
AsuNHI GCTAGC 1 cut(s) 674
BalI TGGCCA 1 cut(s) 919
BarI GAAGNNNNNNTAC 2 cut(s) 540, 572
BauI CACGAG 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 4 cut(s) 114, 226, 781, 854
BccI CCATC 4 cut(s) 107, 410, 917, 1023
BceAI ACGGC 3 cut(s) 85, 687, 1136
BciT130I CCWGG 1 cut(s) 916
BciVI GTATCC 1 cut(s) 950
BcoDI GTCTC 5 cut(s) 87, 602, 624, 650, 848
BfaI CTAG 2 cut(s) 329, 675
BfmI CTRYAG 2 cut(s) 873, 1126
BfuAI ACCTGC 1 cut(s) 254
BfuI GTATCC 1 cut(s) 950
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 128, 240, 795, 843
BlsI GCNGC 4 cut(s) 129, 241, 796, 844
BmcAI AGTACT 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 916
BmgT120I GGNCC 2 cut(s) 1094, 1201
BmiI GGNNCC 1 cut(s) 1095
BmrFI CCNGG 1 cut(s) 916
BmsI GCATC 3 cut(s) 139, 721, 994
BmtI GCTAGC 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 588, 646
BsaAI YACGTR 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 564
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 916
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 3 cut(s) 118, 712, 987
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 3 cut(s) 843, 874, 1172
BseNI ACTGG 1 cut(s) 564
BseXI GCAGC 4 cut(s) 114, 226, 781, 854
Bsh1236I CGCG 1 cut(s) 890
BshFI GGCC 4 cut(s) 919, 1021, 1096, 1202
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 1254
BsmAI GTCTC 5 cut(s) 87, 602, 624, 650, 848
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 1254
BsnI GGCC 4 cut(s) 919, 1021, 1096, 1202
Bso31I GGTCTC 1 cut(s) 602
Bsp143I GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 1091
BspANI GGCC 4 cut(s) 919, 1021, 1096, 1202
BspCNI CTCAG 3 cut(s) 844, 873, 1173
BspFNI CGCG 1 cut(s) 890
BspLI GGNNCC 1 cut(s) 1095
BspMAI CTGCAG 1 cut(s) 877
BspMI ACCTGC 1 cut(s) 254
BspOI GCTAGC 1 cut(s) 678
BspPI GGATC 5 cut(s) 107, 259, 463, 608, 631
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
BssSI CACGAG 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 916
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 2 cut(s) 655, 1182
BstBAI YACGTR 1 cut(s) 687
BstC8I GCNNGC 4 cut(s) 676, 710, 799, 1254
BstDEI CTNAG 5 cut(s) 292, 470, 852, 860, 1181
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 118, 712, 987
BstFNI CGCG 1 cut(s) 890
BstKTI GATC 8 cut(s) 85, 102, 267, 435, 458, 496, 616, 639
BstMAI GTCTC 5 cut(s) 87, 602, 624, 650, 848
BstMBI GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
BstMWI GCNNNNNNNGC 3 cut(s) 709, 1088, 1138
BstNI CCWGG 1 cut(s) 916
BstNSI RCATGY 2 cut(s) 842, 1256
BstSCI CCNGG 1 cut(s) 914
BstSFI CTRYAG 2 cut(s) 873, 1126
BstUI CGCG 1 cut(s) 890
BstV1I GCAGC 4 cut(s) 114, 226, 781, 854
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 3 cut(s) 82, 99, 264
BstXI CCANNNNNNTGG 1 cut(s) 1029
BstYI RGATCY 3 cut(s) 82, 99, 264
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 4 cut(s) 919, 1021, 1096, 1202
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 118, 712, 987
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 2 cut(s) 464, 881
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 4 cut(s) 676, 710, 799, 1254
Cfr13I GGNCC 2 cut(s) 1094, 1201
Csp6I GTAC 4 cut(s) 12, 189, 360, 622
CviAII CATG 6 cut(s) 337, 374, 777, 839, 962, 1253
CviQI GTAC 4 cut(s) 12, 189, 360, 622
DdeI CTNAG 5 cut(s) 292, 470, 852, 860, 1181
DpnI GATC 8 cut(s) 84, 101, 266, 434, 457, 495, 615, 638
DpnII GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 917, 1019
Eam1104I CTCTTC 2 cut(s) 655, 1182
EarI CTCTTC 2 cut(s) 655, 1182
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 602
Eco57I CTGAAG 3 cut(s) 166, 255, 828
EcoRII CCWGG 1 cut(s) 914
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 6 cut(s) 340, 377, 780, 842, 965, 1256
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 1254
FatI CATG 6 cut(s) 336, 373, 776, 838, 961, 1252
FauI CCCGC 1 cut(s) 1084
Fnu4HI GCNGC 4 cut(s) 128, 240, 795, 843
FokI GGATG 3 cut(s) 125, 699, 994
Fsp4HI GCNGC 4 cut(s) 128, 240, 795, 843
FspBI CTAG 2 cut(s) 329, 675
GluI GCNGC 4 cut(s) 128, 240, 795, 843
HaeIII GGCC 4 cut(s) 919, 1021, 1096, 1202
HapII CCGG 1 cut(s) 657
Hin1II CATG 6 cut(s) 340, 377, 780, 842, 965, 1256
HinfI GANTC 3 cut(s) 296, 310, 599
HpaII CCGG 1 cut(s) 657
HphI GGTGA 1 cut(s) 1010
Hpy166II GTNNAC 1 cut(s) 967
Hpy188I TCNGA 5 cut(s) 82, 235, 460, 547, 853
Hpy188III TCNNGA 4 cut(s) 307, 605, 764, 818
Hpy8I GTNNAC 1 cut(s) 967
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 709, 1088, 1138
HpyF3I CTNAG 5 cut(s) 292, 470, 852, 860, 1181
HpySE526I ACGT 1 cut(s) 686
Hsp92II CATG 6 cut(s) 340, 377, 780, 842, 965, 1256
Kzo9I GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
Lsp1109I GCAGC 4 cut(s) 114, 226, 781, 854
LweI GCATC 3 cut(s) 139, 721, 994
MaeI CTAG 2 cut(s) 329, 675
MaeII ACGT 1 cut(s) 686
MaeIII GTNAC 1 cut(s) 506
MalI GATC 8 cut(s) 84, 101, 266, 434, 457, 495, 615, 638
MboI GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 3 cut(s) 82, 99, 264
MlsI TGGCCA 1 cut(s) 919
MluNI TGGCCA 1 cut(s) 919
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 4 cut(s) 11, 726, 745, 781
Mox20I TGGCCA 1 cut(s) 919
Mph1103I ATGCAT 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 919
MseI TTAA 5 cut(s) 158, 446, 512, 1086, 1270
Msp20I TGGCCA 1 cut(s) 919
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 916
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 916
MvnI CGCG 1 cut(s) 890
MwoI GCNNNNNNNGC 3 cut(s) 709, 1088, 1138
NcoI CCATGG 1 cut(s) 336
NdeII GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
NheI GCTAGC 1 cut(s) 674
NlaIII CATG 6 cut(s) 340, 377, 780, 842, 965, 1256
NlaIV GGNNCC 1 cut(s) 1095
NsiI ATGCAT 1 cut(s) 782
NspI RCATGY 2 cut(s) 842, 1256
PaeI GCATGC 1 cut(s) 1256
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 310, 599
PkrI GCNGC 4 cut(s) 129, 241, 796, 844
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 914
PspGI CCWGG 1 cut(s) 914
PspN4I GGNNCC 1 cut(s) 1095
PspPI GGNCC 2 cut(s) 1094, 1201
PstI CTGCAG 1 cut(s) 877
PsuI RGATCY 3 cut(s) 82, 99, 264
RsaI GTAC 4 cut(s) 13, 190, 361, 623
RsaNI GTAC 4 cut(s) 12, 189, 360, 622
SaqAI TTAA 5 cut(s) 158, 446, 512, 1086, 1270
SatI GCNGC 4 cut(s) 128, 240, 795, 843
Sau3AI GATC 8 cut(s) 82, 99, 264, 432, 455, 493, 613, 636
Sau96I GGNCC 2 cut(s) 1094, 1201
ScaI AGTACT 1 cut(s) 623
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 916
SfaNI GCATC 3 cut(s) 139, 721, 994
SfcI CTRYAG 2 cut(s) 873, 1126
SmlI CTYRAG 2 cut(s) 603, 625
SmoI CTYRAG 2 cut(s) 603, 625
SphI GCATGC 1 cut(s) 1256
SsiI CCGC 1 cut(s) 1091
SspMI CTAG 2 cut(s) 329, 675
StyD4I CCNGG 1 cut(s) 914
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 689
TaqI TCGA 1 cut(s) 146
TaqII GACCGA 1 cut(s) 626
TatI WGTACW 3 cut(s) 11, 188, 621
TfiI GAWTC 2 cut(s) 310, 599
Tru1I TTAA 5 cut(s) 158, 446, 512, 1086, 1270
Tru9I TTAA 5 cut(s) 158, 446, 512, 1086, 1270
TscAI CASTG 2 cut(s) 471, 888
TseI GCWGC 4 cut(s) 127, 239, 794, 842
TspDTI ATGAA 8 cut(s) 17, 49, 168, 296, 366, 531, 765, 998
TspGWI ACGGA 3 cut(s) 238, 357, 984
TspRI CASTG 2 cut(s) 471, 888
XapI RAATTY 4 cut(s) 1013, 1073, 1101, 1172
XceI RCATGY 2 cut(s) 842, 1256
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 329, 675
ZrmI AGTACT 1 cut(s) 623
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.