Rorug02G0378100

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000239
Physical Location & Seq
Forward (+)
48330040 .. 48330534
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0378100.1

Sequence Viewer

Length: 495 bp
ATGTTGAAACTGATCCCTGGTGTGGTGAAGGAGATTACATATTTCTTTGAGAAGTTACATGGAAAGTGCAAGGACTACAAACTGATTATCCATGAACAGGATGTATGCCCTCTTGGGGCTGCACCGAAGTTGCAGAATAACACTGAAGCACAGGGTGCAATTGGGACCTCTCTGGCGTCTAACTTTCCAGGCCTCTCTGATCTCCGCTTTCAAAATGGGACCTTTCGGTTTCATGGAGTTCAAGCCCCCATACTGCCATCTATTGCTCGAAATCTGTTTGGTGCTCCATCTATGCACAAACCTAGACGTCCCATTGTCATTAGAAATGAAGATGTGAGGCCTGAGGCAATAAATACTGTGCTAGCTTTACCTCCTGCTGAGGCAGACCAAGCTGCAGTCAAGAGAGGGCGCCCATCCTCACCATTCTCGTCCCCAAAAAAACTGAAAACTCTTTTTGGAGAGAGTAGCCAGGTTACAAGTCCATCCATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

164

Amino Acids

17.92

Weight (kDa)

9.78

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 408
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 3 cut(s) 176, 307, 409
AdeI CACNNNGTG 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 22, 97, 115
AgsI TTSAA 3 cut(s) 7, 212, 242
AjnI CCWGG 3 cut(s) 16, 187, 468
AluBI AGCT 2 cut(s) 365, 392
AluI AGCT 2 cut(s) 365, 392
Alw21I GWGCWC 1 cut(s) 286
AlwI GGATC 1 cut(s) 7
AoxI GGCC 2 cut(s) 190, 338
ApeKI GCWGC 2 cut(s) 119, 392
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 165, 219
AsuHPI GGTGA 2 cut(s) 37, 411
AsuNHI GCTAGC 1 cut(s) 361
AvaII GGWCC 2 cut(s) 165, 219
AxyI CCTNAGG 1 cut(s) 342
BanI GGYRCC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 106, 379
BccI CCATC 4 cut(s) 265, 295, 421, 490
BciT130I CCWGG 3 cut(s) 18, 189, 470
BfaI CTAG 2 cut(s) 303, 362
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 412
BisI GCNGC 2 cut(s) 120, 393
BlsI GCNGC 2 cut(s) 121, 394
Bme1390I CCNGG 3 cut(s) 18, 189, 470
Bme18I GGWCC 2 cut(s) 165, 219
BmgT120I GGNCC 2 cut(s) 165, 219
BmiI GGNNCC 3 cut(s) 166, 220, 410
BmrFI CCNGG 3 cut(s) 18, 189, 470
BmtI GCTAGC 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 378
BsaHI GRCGYC 3 cut(s) 176, 307, 409
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 97, 115
Bse21I CCTNAGG 1 cut(s) 342
BseBI CCWGG 3 cut(s) 18, 189, 470
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 3 cut(s) 106, 413, 482
BseLI CCNNNNNNNGG 3 cut(s) 22, 97, 115
BseMII CTCAG 2 cut(s) 333, 369
BseXI GCAGC 2 cut(s) 106, 379
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 192, 340
BshNI GGYRCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 286
BslFI GGGAC 4 cut(s) 178, 232, 294, 415
BslI CCNNNNNNNGG 3 cut(s) 22, 97, 115
BsmFI GGGAC 4 cut(s) 178, 232, 294, 415
BsnI GGCC 2 cut(s) 192, 340
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 12, 199
BspACI CCGC 1 cut(s) 205
BspANI GGCC 2 cut(s) 192, 340
BspCNI CTCAG 2 cut(s) 334, 370
BspLI GGNNCC 3 cut(s) 166, 220, 410
BspMAI CTGCAG 1 cut(s) 397
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 12, 199
BssNI GRCGYC 3 cut(s) 176, 307, 409
Bst2UI CCWGG 3 cut(s) 18, 189, 470
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 3 cut(s) 176, 307, 409
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 342, 378
BstF5I GGATG 3 cut(s) 106, 413, 482
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 2 cut(s) 15, 202
BstMBI GATC 2 cut(s) 12, 199
BstMWI GCNNNNNNNGC 2 cut(s) 155, 389
BstNI CCWGG 3 cut(s) 18, 189, 470
BstSCI CCNGG 3 cut(s) 16, 187, 468
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 106, 379
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 2 cut(s) 192, 340
BtsCI GGATG 3 cut(s) 106, 413, 482
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 363
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 165, 219
CseI GACGC 1 cut(s) 165
CviAII CATG 4 cut(s) 59, 92, 233, 487
CviJI RGCY 7 cut(s) 119, 192, 245, 340, 365, 392, 468
CviKI_1 RGCY 7 cut(s) 119, 192, 245, 340, 365, 392, 468
DdeI CTNAG 2 cut(s) 342, 378
DinI GGCGCC 1 cut(s) 410
DpnI GATC 2 cut(s) 14, 201
DpnII GATC 2 cut(s) 12, 199
DraIII CACNNNGTG 1 cut(s) 155
Eco147I AGGCCT 2 cut(s) 192, 340
Eco47I GGWCC 2 cut(s) 165, 219
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 342
EcoO109I RGGNCCY 2 cut(s) 165, 219
EcoRII CCWGG 3 cut(s) 16, 187, 468
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
FaeI CATG 4 cut(s) 62, 95, 236, 490
FaiI YATR 8 cut(s) 40, 60, 93, 106, 234, 251, 293, 488
FaqI GGGAC 4 cut(s) 178, 232, 294, 415
FatI CATG 4 cut(s) 58, 91, 232, 486
Fnu4HI GCNGC 2 cut(s) 120, 393
FokI GGATG 3 cut(s) 113, 400, 469
Fsp4HI GCNGC 2 cut(s) 120, 393
FspBI CTAG 2 cut(s) 303, 362
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 120, 393
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 192, 340
HgaI GACGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 3 cut(s) 176, 307, 409
Hin1II CATG 4 cut(s) 62, 95, 236, 490
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HphI GGTGA 2 cut(s) 37, 411
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 400
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 6 cut(s) 69, 122, 133, 158, 295, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 389
HpyF3I CTNAG 2 cut(s) 342, 378
HpySE526I ACGT 1 cut(s) 307
Hsp92I GRCGYC 3 cut(s) 176, 307, 409
Hsp92II CATG 4 cut(s) 62, 95, 236, 490
HspAI GCGC 1 cut(s) 409
KasI GGCGCC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 12, 199
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 106, 379
MaeI CTAG 2 cut(s) 303, 362
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 54, 472
MalI GATC 2 cut(s) 14, 201
MboI GATC 2 cut(s) 12, 199
MboII GAAGA 1 cut(s) 341
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 409
MnlI CCTC 9 cut(s) 120, 178, 203, 330, 337, 373, 381, 398, 427
MspR9I CCNGG 3 cut(s) 18, 189, 470
MunI CAATTG 1 cut(s) 159
MvaI CCWGG 3 cut(s) 18, 189, 470
MwoI GCNNNNNNNGC 2 cut(s) 155, 389
NarI GGCGCC 1 cut(s) 409
NdeII GATC 2 cut(s) 12, 199
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 4 cut(s) 62, 95, 236, 490
NlaIV GGNNCC 3 cut(s) 166, 220, 410
PceI AGGCCT 2 cut(s) 192, 340
PkrI GCNGC 2 cut(s) 121, 394
PluTI GGCGCC 1 cut(s) 412
PpuMI RGGWCCY 2 cut(s) 165, 219
Psp5II RGGWCCY 2 cut(s) 165, 219
Psp6I CCWGG 3 cut(s) 16, 187, 468
PspGI CCWGG 3 cut(s) 16, 187, 468
PspN4I GGNNCC 3 cut(s) 166, 220, 410
PspPI GGNCC 2 cut(s) 165, 219
PspPPI RGGWCCY 2 cut(s) 165, 219
PstI CTGCAG 1 cut(s) 397
SatI GCNGC 2 cut(s) 120, 393
Sau3AI GATC 2 cut(s) 12, 199
Sau96I GGNCC 2 cut(s) 165, 219
ScrFI CCNGG 3 cut(s) 18, 189, 470
SduI GDGCHC 1 cut(s) 286
SetI ASST 8 cut(s) 170, 224, 304, 310, 367, 373, 394, 474
SfcI CTRYAG 1 cut(s) 393
SfoI GGCGCC 1 cut(s) 410
SinI GGWCC 2 cut(s) 165, 219
Sse9I AATT 1 cut(s) 159
SseBI AGGCCT 2 cut(s) 192, 340
SsiI CCGC 1 cut(s) 205
SspDI GGCGCC 1 cut(s) 408
SspMI CTAG 2 cut(s) 303, 362
StuI AGGCCT 2 cut(s) 192, 340
StyD4I CCNGG 3 cut(s) 16, 187, 468
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 159
TscAI CASTG 1 cut(s) 148
TseI GCWGC 2 cut(s) 119, 392
TspDTI ATGAA 3 cut(s) 108, 221, 342
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 165, 219
XspI CTAG 2 cut(s) 303, 362
ZraI GACGTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.