Rmu_sc0000487.1_g000031

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000487.1
OG0000239
Physical Location & Seq
Forward (+)
138402 .. 139685
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000487.1_g000031.1.cds

Sequence Viewer

Length: 948 bp
atgagtggaaaagatgaagaaggcaaccggtttacccatgcttttgaattggagcaagaagctgccttgtatcggttaattgatgtattctggaagatcaaacgtttcttaaacatcggtaaggaagcagagctaaagaaaaacatcaaagtggttgatcaatttgtgtataaattaatcaatagcaagattgaaactatccagaatccagaagttaacctattgctgaagaaaagagacttggtttcaaggcgtttggaattgaaagatactgatccaaagtacctgagagacatcgtcctctgtgttactgtcgctggacaagacacgacagctagttctctttcatggtttgtttatatgatgtgcaagcatcttcacatacaagaaaaaattgcacaggaagttagagaagtaataaatttggaagataattctagtattgatgagcttgcagcaagccttgatcaagaagcccttgacaaaatgcaatatctacatgctgctttaagtgaaacaatcagactctatccttcagttccaatgaacacaaggatgtgtttttctgatgatacctggccagatggatttagtgtcaaaaaaggggacatggtggtataccaaccttatgcaatgggaaggatgaaatctctatggggagatgatgcagaagagtttaggccagagagatggcttgatgaaaatggtcttttccaagacgaaagcccttacaaattcatagccttcagtgctggtccaagaatttgtcttggaaaggaacacgcatatacgcaaatgaagatattttctgctgtgcttttatgcagctatatattcaagctaactgatgagaaaaaaattgccaattacaagaccatggtcaccctaccaattgatggaggtctctatgtgaatgcctccccaagattatggcgtgcaagaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

315

Amino Acids

36.49

Weight (kDa)

6.05

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 896
AccI GTMKAC 1 cut(s) 618
AclI AACGTT 1 cut(s) 103
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 3 cut(s) 421, 734, 762
AcuI CTGAAG 3 cut(s) 248, 519, 730
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 72, 896
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 47, 194, 249, 265, 838
AjnI CCWGG 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 6 cut(s) 62, 133, 335, 451, 828, 841
AluI AGCT 6 cut(s) 62, 133, 335, 451, 828, 841
Alw26I GTCTC 3 cut(s) 231, 285, 908
AlwI GGATC 1 cut(s) 269
AoxI GGCC 2 cut(s) 578, 680
ApeKI GCWGC 4 cut(s) 62, 455, 503, 825
ApoI RAATTY 3 cut(s) 421, 734, 762
AseI ATTAAT 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 755
AsuHPI GGTGA 1 cut(s) 874
AvaII GGWCC 1 cut(s) 755
BalI TGGCCA 1 cut(s) 580
BbvI GCAGC 4 cut(s) 49, 467, 490, 837
BccI CCATC 3 cut(s) 578, 684, 890
BciT130I CCWGG 1 cut(s) 577
BclI TGATCA 2 cut(s) 157, 466
BcoDI GTCTC 3 cut(s) 231, 285, 908
BfaI CTAG 2 cut(s) 336, 438
BisI GCNGC 4 cut(s) 63, 456, 504, 826
BlsI GCNGC 4 cut(s) 64, 457, 505, 827
Bme1390I CCNGG 1 cut(s) 577
Bme18I GGWCC 1 cut(s) 755
BmgT120I GGNCC 1 cut(s) 755
BmrFI CCNGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 382, 655
BoxI GACNNNNGTC 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 1 cut(s) 876
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 896
Bse118I RCCGGY 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 639
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 577
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 2 cut(s) 561, 648
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 72, 896
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 278
BseXI GCAGC 4 cut(s) 49, 467, 490, 837
BshFI GGCC 2 cut(s) 580, 682
BshTI ACCGGT 1 cut(s) 27
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 72, 896
BsmAI GTCTC 3 cut(s) 231, 285, 908
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 2 cut(s) 580, 682
Bso31I GGTCTC 1 cut(s) 908
Bsp143I GATC 4 cut(s) 96, 157, 274, 466
Bsp19I CCATGG 1 cut(s) 876
BspANI GGCC 2 cut(s) 580, 682
BspCNI CTCAG 1 cut(s) 279
BspPI GGATC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 908
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 4 cut(s) 96, 157, 274, 466
BssNAI GTATAC 1 cut(s) 619
BssT1I CCWWGG 1 cut(s) 876
Bst1107I GTATAC 1 cut(s) 619
Bst2UI CCWGG 1 cut(s) 577
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 666
BstC8I GCNNGC 4 cut(s) 371, 453, 460, 936
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 876
BstEII GGTNACC 1 cut(s) 880
BstF5I GGATG 2 cut(s) 561, 648
BstKTI GATC 4 cut(s) 99, 160, 277, 469
BstMAI GTCTC 3 cut(s) 231, 285, 908
BstMBI GATC 4 cut(s) 96, 157, 274, 466
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNI CCWGG 1 cut(s) 577
BstNSI RCATGY 1 cut(s) 503
BstPAI GACNNNNGTC 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 880
BstSCI CCNGG 1 cut(s) 575
BstV1I GCAGC 4 cut(s) 49, 467, 490, 837
BstXI CCANNNNNNTGG 2 cut(s) 690, 930
BstZ17I GTATAC 1 cut(s) 619
BsuRI GGCC 2 cut(s) 580, 682
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 2 cut(s) 561, 648
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 4 cut(s) 371, 453, 460, 936
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 755
Csp6I GTAC 1 cut(s) 283
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 5 cut(s) 38, 348, 500, 610, 877
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 287
DpnI GATC 4 cut(s) 98, 159, 276, 468
DpnII GATC 4 cut(s) 96, 157, 274, 466
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 1 cut(s) 755
Eco57I CTGAAG 3 cut(s) 248, 519, 730
Eco91I GGTNACC 1 cut(s) 880
EcoO65I GGTNACC 1 cut(s) 880
EcoRII CCWGG 1 cut(s) 575
EcoT14I CCWWGG 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 5 cut(s) 41, 351, 503, 613, 880
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 620
FatI CATG 5 cut(s) 37, 347, 499, 609, 876
FbaI TGATCA 2 cut(s) 157, 466
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 4 cut(s) 63, 456, 504, 826
FokI GGATG 2 cut(s) 568, 655
Fsp4HI GCNGC 4 cut(s) 63, 456, 504, 826
FspBI CTAG 2 cut(s) 336, 438
GluI GCNGC 4 cut(s) 63, 456, 504, 826
HaeIII GGCC 2 cut(s) 580, 682
HapII CCGG 1 cut(s) 28
Hin1II CATG 5 cut(s) 41, 351, 503, 613, 880
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 205, 525
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 3 cut(s) 33, 217, 619
Hpy188I TCNGA 2 cut(s) 524, 568
Hpy188III TCNNGA 4 cut(s) 91, 202, 209, 470
Hpy8I GTNNAC 3 cut(s) 33, 217, 619
HpyAV CCTTC 4 cut(s) 14, 543, 633, 754
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 8 cut(s) 369, 398, 455, 490, 632, 668, 825, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 5 cut(s) 41, 351, 503, 613, 880
Ksp22I TGATCA 2 cut(s) 157, 466
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 4 cut(s) 96, 157, 274, 466
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 4 cut(s) 49, 467, 490, 837
LweI GCATC 2 cut(s) 382, 655
MaeI CTAG 2 cut(s) 336, 438
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 307, 880
MalI GATC 4 cut(s) 98, 159, 276, 468
MboI GATC 4 cut(s) 96, 157, 274, 466
MboII GAAGA 7 cut(s) 29, 106, 241, 368, 440, 683, 811
MfeI CAATTG 1 cut(s) 891
MlsI TGGCCA 1 cut(s) 580
MluNI TGGCCA 1 cut(s) 580
MlyI GAGTC 1 cut(s) 519
MnlI CCTC 3 cut(s) 311, 893, 928
Mox20I TGGCCA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 580
MseI TTAA 6 cut(s) 77, 110, 176, 216, 509, 946
MslI CAYNNNNRTG 2 cut(s) 149, 554
Msp20I TGGCCA 1 cut(s) 580
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 577
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 577
MwoI GCNNNNNNNGC 1 cut(s) 749
NcoI CCATGG 1 cut(s) 876
NdeII GATC 4 cut(s) 96, 157, 274, 466
NlaIII CATG 5 cut(s) 41, 351, 503, 613, 880
NmuCI GTSAC 1 cut(s) 880
NspI RCATGY 1 cut(s) 503
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 896
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 4 cut(s) 64, 457, 505, 827
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
PshAI GACNNNNGTC 1 cut(s) 878
PshBI ATTAAT 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 575
PspEI GGTNACC 1 cut(s) 880
PspGI CCWGG 1 cut(s) 575
PspPI GGNCC 1 cut(s) 755
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 149, 554
SaqAI TTAA 6 cut(s) 77, 110, 176, 216, 509, 946
SatI GCNGC 4 cut(s) 63, 456, 504, 826
Sau3AI GATC 4 cut(s) 96, 157, 274, 466
Sau96I GGNCC 1 cut(s) 755
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 1 cut(s) 577
SfaNI GCATC 2 cut(s) 382, 655
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 2 cut(s) 149, 554
SspMI CTAG 2 cut(s) 336, 438
StyD4I CCNGG 1 cut(s) 575
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 106
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 6 cut(s) 77, 110, 176, 216, 509, 946
Tru9I TTAA 6 cut(s) 77, 110, 176, 216, 509, 946
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 4 cut(s) 62, 455, 503, 825
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 7 cut(s) 30, 336, 560, 659, 714, 727, 812
TspRI CASTG 1 cut(s) 754
Tth111I GACNNNGTC 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 896
VpaK11BI GGWCC 1 cut(s) 755
VspI ATTAAT 1 cut(s) 176
XapI RAATTY 3 cut(s) 421, 734, 762
XceI RCATGY 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 618
XspI CTAG 2 cut(s) 336, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.