Rmu_co8138120.1_g000001

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8138120.1
OG0000239
Physical Location & Seq
Forward (+)
4 .. 631
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8138120.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgcatagcattttgtcagatgttctcggtaatgggatctttgctgtggatgggggaaaatggcgccatcagaggaaggcattgagttccgaattttcaaccaaaatgctgagagacttcagcagtgcagtcttcaaacttggtgcagttaaacttgctcgcgtaattgcaacctgtgaccaagcaatagagatccaagatttgttgatgaaatcatccttggattcaatcattaagattctacttggtatcgagctagacagcctgagtggaacaaatgaagaaggtaaccggttttccattgcttttgatcaagcaaacgaaactaccatgtttcggtttgttgatatcttctggaagatcaaacggttcttaaacatcggtagggaagcagtgctaagggaaaatagtagtgtgatagatcaatttgtgtacaaattaatcaaaagcaagattgagataatgcatcatttagaagacaaacaatctgtgagttatcttccatgccatctttgtcctagattaaacttttgttatttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

180

Amino Acids

20.54

Weight (kDa)

8.34

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccII CGCG 1 cut(s) 162
AclWI GGATC 2 cut(s) 44, 187
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 336
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 3 cut(s) 99, 136, 228
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 2 cut(s) 44, 187
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 440
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 124, 483
BccI CCATC 3 cut(s) 44, 75, 516
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 257, 519
BfoI RGCGCY 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 2 cut(s) 124, 483
Bpu10I CCTNAGC 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 55, 215
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 101, 257
BsgI GTGCAG 2 cut(s) 147, 165
Bsh1236I CGCG 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 63
BshTI ACCGGT 1 cut(s) 291
BsiSI CCGG 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 5 cut(s) 36, 192, 310, 360, 421
BspCNI CTCAG 2 cut(s) 102, 258
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 2 cut(s) 44, 187
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 291
BsrGI TGTACA 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 5 cut(s) 36, 192, 310, 360, 421
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 64
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 110, 266, 398
BstEII GGTNACC 1 cut(s) 287
BstF5I GGATG 2 cut(s) 55, 215
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 5 cut(s) 39, 195, 313, 363, 424
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 5 cut(s) 36, 192, 310, 360, 421
BstPI GGTNACC 1 cut(s) 287
BstUI CGCG 1 cut(s) 162
BstV2I GAAGAC 2 cut(s) 124, 483
BstX2I RGATCY 2 cut(s) 36, 192
BstYI RGATCY 2 cut(s) 36, 192
BtsCI GGATG 2 cut(s) 55, 215
BtsI GCAGTG 2 cut(s) 130, 399
BtsIMutI CAGTG 2 cut(s) 130, 399
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 291
Csp6I GTAC 1 cut(s) 433
CspAI ACCGGT 1 cut(s) 291
CviAII CATG 2 cut(s) 331, 504
CviJI RGCY 2 cut(s) 256, 264
CviKI_1 RGCY 2 cut(s) 256, 264
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 3 cut(s) 110, 266, 398
DinI GGCGCC 1 cut(s) 65
DpnI GATC 5 cut(s) 38, 194, 312, 362, 423
DpnII GATC 5 cut(s) 36, 192, 310, 360, 421
Eco130I CCWWGG 1 cut(s) 219
Eco32I GATATC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 103
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 2 cut(s) 6, 468
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 334, 507
FaiI YATR 4 cut(s) 6, 332, 505, 541
FatI CATG 2 cut(s) 330, 503
FbaI TGATCA 1 cut(s) 310
FokI GGATG 2 cut(s) 62, 202
FspBI CTAG 2 cut(s) 257, 519
GlaI GCGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 67
HapII CCGG 1 cut(s) 292
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 2 cut(s) 334, 507
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 224, 238
HpaII CCGG 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 3 cut(s) 19, 72, 91
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 70, 278
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 4, 128, 146, 170, 466
HpyF3I CTNAG 3 cut(s) 110, 266, 398
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 334, 507
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 5 cut(s) 36, 192, 310, 360, 421
LpnPI CCDG 4 cut(s) 187, 278, 305, 340
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 257, 519
MaeIII GTNAC 2 cut(s) 176, 287
MalI GATC 5 cut(s) 38, 194, 312, 362, 423
MboI GATC 5 cut(s) 36, 192, 310, 360, 421
MboII GAAGA 6 cut(s) 124, 293, 343, 370, 488, 491
MflI RGATCY 2 cut(s) 36, 192
MluCI AATT 4 cut(s) 92, 165, 425, 437
Mly113I GGCGCC 1 cut(s) 64
MnlI CCTC 1 cut(s) 66
Mph1103I ATGCAT 2 cut(s) 6, 468
MseI TTAA 5 cut(s) 150, 234, 374, 440, 524
MspI CCGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 162
NarI GGCGCC 1 cut(s) 64
NdeII GATC 5 cut(s) 36, 192, 310, 360, 421
NlaIII CATG 2 cut(s) 334, 507
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 2 cut(s) 6, 468
PfeI GAWTC 2 cut(s) 224, 238
PinAI ACCGGT 1 cut(s) 291
PluTI GGCGCC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 440
PspEI GGTNACC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 65
PsuI RGATCY 2 cut(s) 36, 192
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 5 cut(s) 150, 234, 374, 440, 524
Sau3AI GATC 5 cut(s) 36, 192, 310, 360, 421
SetI ASST 3 cut(s) 176, 258, 289
SfaNI GCATC 1 cut(s) 475
SfoI GGCGCC 1 cut(s) 65
Sse9I AATT 4 cut(s) 92, 165, 425, 437
SspDI GGCGCC 1 cut(s) 63
SspMI CTAG 2 cut(s) 257, 519
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 252
TasI AATT 4 cut(s) 92, 165, 425, 437
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 2 cut(s) 224, 238
Tru1I TTAA 5 cut(s) 150, 234, 374, 440, 524
Tru9I TTAA 5 cut(s) 150, 234, 374, 440, 524
TscAI CASTG 2 cut(s) 130, 399
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 224, 294
TspRI CASTG 2 cut(s) 130, 399
VspI ATTAAT 1 cut(s) 440
XapI RAATTY 1 cut(s) 92
XspI CTAG 2 cut(s) 257, 519
Zsp2I ATGCAT 2 cut(s) 6, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.