Rh2CG417400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000239
Physical Location & Seq
Reverse (-)
57046659 .. 57049527
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG417400.1

Sequence Viewer

Length: 1371 bp
ATGAGCGTCATGGATTTTCTTTCCATTTCATTGCATCCTATACCTATAAGTTTAGCAGCAATTCTTTTAGCTATGTTTATGGTTAGACCCCATGCCAGAAGATTATGTGAGAAGAGAAAGAGATATCATCCTGTTGCTGGAACTGTCTTGAACCAACTGATCAACTTCCCTCGGCTGCACCATTACATGACTGAGCTTGCATGCAAATATACAACTTACCGGTTGCTTGGCTTTTTCAGAAGTGAGGTTTACACCTCAGATCCTGCAAATGTTGAATACATGCTCAAAACGAACTTTGTAAATTATGGCAAGGGCTTGTACCACCACAGCATTTTGTCAGATATTGCAGGGGATAGTATTTTCACTGTGGATGGGGAAAGCTGGCAGCATCAAAGGAAGTTATCAAGCTATGAATTCTCAACCAAAATAATGAGAGACTTCAGCCTGCAAGTCTTCAGAACCAATGCAGTAAAACTTGCTCGGATAATTTCTGAAGCTATAACCTTTGACCAAGCAATAGAAATCCAAGATTTGTTTATGAAATCCTCCTTAGACTCAATCGTCAGGATTTTTCTTGGTATCGACCTTGACACCATGGGTGGAACAAATGAAGAAGGTATCCGGTTTTCCTATGTCTTTAATGAAGCAAACGAATTTATCCTCTATCGATACGTTGATTTCTTCTGGAAGATCAAGCGGTTCTTAAACATTGGTTCTGAAGCAGTGCTAAAGAATCATATCAAAGTGATAGATCAATTTATGTATACATTAATCAAAAGCAAGATGGATGCGGTCCATCAGTCAGAAGATAATCTACCCCTAAAGAAAAGAGACTTTATTTCAAGGCTTTTGGAAATGAAAGAGACCAATCCAAAGTATATTAAAGACATGGGAGTCAATTTTATTATTGCCGGGAAAGATACTGTGGCTACTGCTCTTTCTTGGCTTTTTTATATGCTCTGCAAGTATCCTCGTATACAAGAAAAGATTTCACAGGAGGTTAGAGAAGCAACCAATATGAAAGATAATTCAAGTATGGATGAGCTTGCAGCCAGCCTTACTGAAGAAGTCCTCGACAAAATGCAATATCTCCATGCAGCTTTGACCGAGACACTCAGACTTTACCCTGCAGTTCCAGTGAATGCAAAGGTTTGTTTTTCTGATGATACCTGGCCAGATGGATTTAGTGTCAAAAAAGGGGATATGGTGGCATACCAACCTTATGCCATGGGCAGGATGAAGTTTCTATGGGGTGATGAAGCAGAAGAGTTTCGGCCAGAGAGATGGCTTGATGAAAATGGCATTTTCCAGCCAGAAAGCCCTTTCAAATTCACGGCCTTCCAGGTAAATATAGTATATAATATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

456

Amino Acids

53.08

Weight (kDa)

6.62

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 447 1.5e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 560, 893
AccI GTMKAC 2 cut(s) 764, 976
AciI CCGC 2 cut(s) 697, 791
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 2 cut(s) 1172, 1274
AcsI RAATTY 3 cut(s) 413, 653, 1328
AcuI CTGAAG 5 cut(s) 424, 439, 513, 738, 1083
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 137, 1233
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 5 cut(s) 151, 275, 843, 1032, 1327
AjnI CCWGG 2 cut(s) 1169, 1341
AluBI AGCT 7 cut(s) 71, 196, 381, 408, 497, 1045, 1100
AluI AGCT 7 cut(s) 71, 196, 381, 408, 497, 1045, 1100
Alw26I GTCTC 4 cut(s) 429, 825, 857, 1103
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 3 cut(s) 1172, 1274, 1335
ApeKI GCWGC 5 cut(s) 56, 175, 385, 1049, 1097
ApoI RAATTY 3 cut(s) 413, 653, 1328
AseI ATTAAT 1 cut(s) 770
AsiGI ACCGGT 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 1269
AspS9I GGNCC 1 cut(s) 793
AsuC2I CCSGG 1 cut(s) 913
AsuHPI GGTGA 1 cut(s) 1265
AvaII GGWCC 1 cut(s) 793
BalI TGGCCA 1 cut(s) 1174
BarI GAAGNNNNNNTAC 2 cut(s) 798, 830
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 5 cut(s) 68, 162, 397, 1061, 1109
BccI CCATC 5 cut(s) 365, 778, 804, 1172, 1278
BceAI ACGGC 1 cut(s) 1350
BciT130I CCWGG 2 cut(s) 1171, 1343
BciVI GTATCC 2 cut(s) 629, 978
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 4 cut(s) 429, 825, 857, 1103
BfmI CTRYAG 1 cut(s) 1128
BfuI GTATCC 2 cut(s) 629, 978
BisI GCNGC 5 cut(s) 57, 176, 386, 1050, 1098
BlsI GCNGC 5 cut(s) 58, 177, 387, 1051, 1099
Bme1390I CCNGG 3 cut(s) 913, 1171, 1343
Bme18I GGWCC 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 793
BmrFI CCNGG 3 cut(s) 913, 1171, 1343
BmsI GCATC 3 cut(s) 43, 397, 778
BpiI GAAGAC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 913
Bsa29I ATCGAT 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 3 cut(s) 170, 594, 1227
BsaWI WCCGGW 2 cut(s) 219, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 1233
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 1136
Bse3DI GCAATG 1 cut(s) 29
BseBI CCWGG 2 cut(s) 1171, 1343
BseCI ATCGAT 1 cut(s) 667
BseDI CCNNGG 3 cut(s) 170, 594, 1227
BseGI GGATG 6 cut(s) 34, 127, 376, 793, 1045, 1242
BseLI CCNNNNNNNGG 2 cut(s) 137, 1233
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 3 cut(s) 183, 270, 1129
BseNI ACTGG 1 cut(s) 1136
BseXI GCAGC 5 cut(s) 68, 162, 397, 1061, 1109
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 3 cut(s) 1174, 1276, 1337
BshTI ACCGGT 1 cut(s) 219
BshVI ATCGAT 1 cut(s) 667
BsiSI CCGG 3 cut(s) 220, 622, 912
BslI CCNNNNNNNGG 2 cut(s) 137, 1233
BsmAI GTCTC 4 cut(s) 429, 825, 857, 1103
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 3 cut(s) 1174, 1276, 1337
Bso31I GGTCTC 1 cut(s) 857
Bsp143I GATC 4 cut(s) 159, 259, 690, 751
Bsp19I CCATGG 2 cut(s) 594, 1227
BspACI CCGC 2 cut(s) 697, 791
BspANI GGCC 3 cut(s) 1174, 1276, 1337
BspCNI CTCAG 3 cut(s) 184, 269, 1128
BspDI ATCGAT 1 cut(s) 667
BspMAI CTGCAG 1 cut(s) 1132
BspPI GGATC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 1 cut(s) 1136
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 170, 594, 1227
BssMI GATC 4 cut(s) 159, 259, 690, 751
BssNAI GTATAC 2 cut(s) 765, 977
BssT1I CCWWGG 2 cut(s) 594, 1227
Bst1107I GTATAC 2 cut(s) 765, 977
Bst2UI CCWGG 2 cut(s) 1171, 1343
Bst4CI ACNGT 3 cut(s) 145, 367, 925
Bst6I CTCTTC 2 cut(s) 107, 1260
BstC8I GCNNGC 6 cut(s) 198, 202, 383, 446, 1047, 1054
BstDEI CTNAG 4 cut(s) 192, 256, 550, 1115
BstDSI CCRYGG 2 cut(s) 594, 1227
BstF5I GGATG 6 cut(s) 34, 127, 376, 793, 1045, 1242
BstKTI GATC 4 cut(s) 162, 262, 693, 754
BstMAI GTCTC 4 cut(s) 429, 825, 857, 1103
BstMBI GATC 4 cut(s) 159, 259, 690, 751
BstNI CCWGG 2 cut(s) 1171, 1343
BstNSI RCATGY 2 cut(s) 204, 283
BstSCI CCNGG 3 cut(s) 911, 1169, 1341
BstSFI CTRYAG 1 cut(s) 1128
BstV1I GCAGC 5 cut(s) 68, 162, 397, 1061, 1109
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 1284
BstYI RGATCY 1 cut(s) 259
BstZ17I GTATAC 2 cut(s) 765, 977
Bsu15I ATCGAT 1 cut(s) 667
BsuI GTATCC 2 cut(s) 629, 978
BsuRI GGCC 3 cut(s) 1174, 1276, 1337
BsuTUI ATCGAT 1 cut(s) 667
BtgI CCRYGG 2 cut(s) 594, 1227
BtsCI GGATG 6 cut(s) 34, 127, 376, 793, 1045, 1242
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 3 cut(s) 363, 729, 1143
Cac8I GCNNGC 6 cut(s) 198, 202, 383, 446, 1047, 1054
CaiI CAGNNNCTG 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 793
ClaI ATCGAT 1 cut(s) 667
Csp6I GTAC 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 219
CviAII CATG 9 cut(s) 10, 92, 187, 201, 280, 595, 889, 1094, 1228
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 192, 256, 550, 1115
DpnI GATC 4 cut(s) 161, 261, 692, 753
DpnII GATC 4 cut(s) 159, 259, 690, 751
DrdI GACNNNNNNGTC 2 cut(s) 560, 893
DseDI GACNNNNNNGTC 2 cut(s) 560, 893
EaeI YGGCCR 2 cut(s) 1172, 1274
Eam1104I CTCTTC 2 cut(s) 107, 1260
EarI CTCTTC 2 cut(s) 107, 1260
Eco130I CCWWGG 2 cut(s) 594, 1227
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 5 cut(s) 424, 439, 513, 738, 1083
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 1169, 1341
EcoRV GATATC 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 594, 1227
ErhI CCWWGG 2 cut(s) 594, 1227
FaeI CATG 9 cut(s) 13, 95, 190, 204, 283, 598, 892, 1097, 1231
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FatI CATG 9 cut(s) 9, 91, 186, 200, 279, 594, 888, 1093, 1227
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 2 cut(s) 764, 976
Fnu4HI GCNGC 5 cut(s) 57, 176, 386, 1050, 1098
FokI GGATG 6 cut(s) 21, 114, 383, 800, 1052, 1249
Fsp4HI GCNGC 5 cut(s) 57, 176, 386, 1050, 1098
GluI GCNGC 5 cut(s) 57, 176, 386, 1050, 1098
HaeIII GGCC 3 cut(s) 1174, 1276, 1337
HapII CCGG 3 cut(s) 220, 622, 912
Hin1II CATG 9 cut(s) 13, 95, 190, 204, 283, 598, 892, 1097, 1231
HinfI GANTC 3 cut(s) 554, 733, 894
HpaII CCGG 3 cut(s) 220, 622, 912
HphI GGTGA 1 cut(s) 1265
Hpy166II GTNNAC 3 cut(s) 250, 765, 977
Hpy188III TCNNGA 3 cut(s) 148, 565, 685
Hpy8I GTNNAC 3 cut(s) 250, 765, 977
HpyAV CCTTC 2 cut(s) 608, 1348
HpyCH4III ACNGT 3 cut(s) 145, 367, 925
HpyCH4IV ACGT 1 cut(s) 672
HpyF3I CTNAG 4 cut(s) 192, 256, 550, 1115
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 9 cut(s) 13, 95, 190, 204, 283, 598, 892, 1097, 1231
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 4 cut(s) 159, 259, 690, 751
Lsp1109I GCAGC 5 cut(s) 68, 162, 397, 1061, 1109
LweI GCATC 3 cut(s) 43, 397, 778
MaeII ACGT 1 cut(s) 672
MalI GATC 4 cut(s) 161, 261, 692, 753
MboI GATC 4 cut(s) 159, 259, 690, 751
MboII GAAGA 9 cut(s) 111, 124, 445, 623, 673, 700, 818, 1076, 1277
MflI RGATCY 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 1174
MluCI AATT 9 cut(s) 60, 301, 413, 486, 653, 755, 898, 1027, 1328
MluNI TGGCCA 1 cut(s) 1174
MlyI GAGTC 2 cut(s) 548, 903
MnlI CCTC 8 cut(s) 180, 238, 265, 556, 671, 981, 991, 1082
Mox20I TGGCCA 1 cut(s) 1174
MroXI GAANNNNTTC 1 cut(s) 1269
MscI TGGCCA 1 cut(s) 1174
MseI TTAA 4 cut(s) 639, 704, 770, 882
Msp20I TGGCCA 1 cut(s) 1174
MspI CCGG 3 cut(s) 220, 622, 912
MspR9I CCNGG 3 cut(s) 913, 1171, 1343
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 2 cut(s) 1171, 1343
NciI CCSGG 1 cut(s) 913
NcoI CCATGG 2 cut(s) 594, 1227
NdeII GATC 4 cut(s) 159, 259, 690, 751
NlaIII CATG 9 cut(s) 13, 95, 190, 204, 283, 598, 892, 1097, 1231
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 2 cut(s) 204, 283
PaeI GCATGC 1 cut(s) 204
PctI GAATGC 1 cut(s) 1147
PdmI GAANNNNTTC 1 cut(s) 1269
PfeI GAWTC 1 cut(s) 733
PinAI ACCGGT 1 cut(s) 219
PkrI GCNGC 5 cut(s) 58, 177, 387, 1051, 1099
PleI GAGTC 2 cut(s) 548, 902
PpsI GAGTC 2 cut(s) 548, 902
PshBI ATTAAT 1 cut(s) 770
Psp6I CCWGG 2 cut(s) 1169, 1341
PspGI CCWGG 2 cut(s) 1169, 1341
PspPI GGNCC 1 cut(s) 793
PstI CTGCAG 1 cut(s) 1132
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 4 cut(s) 639, 704, 770, 882
SatI GCNGC 5 cut(s) 57, 176, 386, 1050, 1098
Sau3AI GATC 4 cut(s) 159, 259, 690, 751
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 2 cut(s) 548, 903
ScrFI CCNGG 3 cut(s) 913, 1171, 1343
SfaNI GCATC 3 cut(s) 43, 397, 778
SfcI CTRYAG 1 cut(s) 1128
SinI GGWCC 1 cut(s) 793
SphI GCATGC 1 cut(s) 204
Sse9I AATT 9 cut(s) 60, 301, 413, 486, 653, 755, 898, 1027, 1328
SsiI CCGC 2 cut(s) 697, 791
StyD4I CCNGG 3 cut(s) 911, 1169, 1341
StyI CCWWGG 2 cut(s) 594, 1227
TaaI ACNGT 3 cut(s) 145, 367, 925
TaiI ACGT 1 cut(s) 675
TaqI TCGA 3 cut(s) 582, 667, 1074
TaqII GACCGA 1 cut(s) 1121
TasI AATT 9 cut(s) 60, 301, 413, 486, 653, 755, 898, 1027, 1328
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 4 cut(s) 639, 704, 770, 882
Tru9I TTAA 4 cut(s) 639, 704, 770, 882
TscAI CASTG 3 cut(s) 370, 729, 1143
TseI GCWGC 5 cut(s) 56, 175, 385, 1049, 1097
TspRI CASTG 3 cut(s) 370, 729, 1143
VpaK11BI GGWCC 1 cut(s) 793
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 3 cut(s) 413, 653, 1328
XceI RCATGY 2 cut(s) 204, 283
XmiI GTMKAC 2 cut(s) 764, 976
XmnI GAANNNNTTC 1 cut(s) 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.