Rh2DG271100

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000239
Physical Location & Seq
Reverse (-)
29668624 .. 29670941
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG271100.1

Sequence Viewer

Length: 828 bp
ATGGATTTTCTTTCCACTCCTTTACCTCCCATTGCAATAGGTTTATTTGCAGTACTTGTTTTGGCAGTAATCTTTCTGCGGAAGAAGAACAAGAAATACCCTCCTGTTGCCGGAACTGTCATACACCAACTGATCAATGTTCCAAGGCTGCACCATTACATGACTGAGCTTGCATGCAAGTACAAAACTTATAGGATGCTCGACTTGTTCAGATATGCTGTCTACACTGTAGATCCTGCAAATGTTGAATACATTCTCAAAACAAACTTTGCAAACTATGGCAAGGGATTATACCTGTACAACATTCTGTCAGATGTTTTGGGTGACGGGATCGTCGCTGTGGATGGAGAAAAATGGCGGCATCAGAGGAAGGCAGCAAGCTCTCAATTCTCAACCAAAGTACTTAGAGACTTCAGCAGTGAAATCCTCAAAACCAATGCAGTAAAGCTTGCTATGATAATATCTGAAGCTGTGACCCGCGATGCAGCAATAGAGATCCAAGATTTGTTTACAAAAGCAACCTTTGACTCGATCGTCAAGGTTCTACTTGGTATGGATCTAGACACCATGTGTGGAATAAATAATGAAGAAAGTATCCAGTTTGCGAAGGCTTATGAAAGAGCCACCGAAGCTGTCCTGTATCGGATTGCTGACATCTCTTGGAGGATCAAACGATTCTTAAACATTGGAAGGGAAGCAGTGATAAGGAATAATATGAAAGTGGTGGATCAATTCTTATACAAACTAGTAAACAGCAAGATTGAAACAGTCGGTAATTCAGAAGATGAGCCATCTGTGAGTTACCTCCAGGCCATCTGTCTCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

275

Amino Acids

31.19

Weight (kDa)

8.92

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 260 1.1e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g12320 FvH4_7g28340 FvH4_7g28350 FvH4_7g28350 FvH4_7g28361 FvH4_7g28450 FvH4_7g28450 FvH4_7g28452 FvH4_7g28453 FvH4_7g28453 FvH4_7g28454 FvH4_7g28455 FvH4_7g28458
malus_domestica MD01G1188000.v1.1 MD01G1188200.v1.1 MD02G1199800.v1.1 MD07G1191000.v1.1 MD11G1075700.v1.1 MD12G1092600.v1.1
prunus_persica Prupe.2G148800_v2.0.a1 Prupe.2G284500_v2.0.a1 Prupe.2G284800_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1 Prupe.2G285200_v2.0.a1
pyrus_communis pycom02g16380 pycom11g06340
rosa_chinensis RchiOBHm_Chr1g0351121 RchiOBHm_Chr1g0359881 RchiOBHm_Chr1g0359951 RchiOBHm_Chr1g0375301 RchiOBHm_Chr1g0375441 RchiOBHm_Chr1g0375471 RchiOBHm_Chr1g0375491 RchiOBHm_Chr1g0375521 RchiOBHm_Chr1g0375531 RchiOBHm_Chr1g0375571 RchiOBHm_Chr1g0375641 RchiOBHm_Chr1g0375681 RchiOBHm_Chr1g0375701 RchiOBHm_Chr1g0375721 RchiOBHm_Chr1g0375751 RchiOBHm_Chr1g0375811 RchiOBHm_Chr1g0375831 RchiOBHm_Chr2g0116601 RchiOBHm_Chr2g0143131
rosa_laevigata RLG00000018292 RLG00000026650 RLG00000026653 RLG00000026655 RLG00000026657 RLG00000026659 RLG00000026660 RLG00000026662 RLG00000026670 RLG00000027846 RLG00000028430
rosa_multiflora Rmu_co8068694.1_g000001 Rmu_co8138120.1_g000001 Rmu_co8293475.1_g000001 Rmu_sc0000487.1_g000028 Rmu_sc0000487.1_g000030 Rmu_sc0000487.1_g000031 Rmu_sc0000487.1_g000051 Rmu_sc0000554.1_g000038 Rmu_sc0001619.1_g000015 Rmu_sc0001644.1_g000001 Rmu_sc0001644.1_g000009 Rmu_sc0001644.1_g000012 Rmu_sc0001644.1_g000013 Rmu_sc0001644.1_g000020 Rmu_sc0001644.1_g000023 Rmu_sc0001644.1_g000031 Rmu_sc0001943.1_g000001 Rmu_sc0001943.1_g000005 Rmu_sc0006087.1_g000005 Rmu_sc0008800.1_g000004 Rmu_sc0015155.1_g000001 Rmu_ssc0000106.1_g000005 Rmu_ssc0000368.1_g000003
rosa_roxburghii Rroxscaffold_2G00102100 Rroxscaffold_2G00127030 Rroxscaffold_4G00282580 Rroxscaffold_4G00282620 Rroxscaffold_4G00282650 Rroxscaffold_4G00282670 Rroxscaffold_4G00282740 Rroxscaffold_4G00282840 Rroxscaffold_4G00304050
rosa_rugosa Rorug01G0216600 Rorug01G0273300 Rorug01G0273400 Rorug01G0390900 Rorug01G0391000 Rorug01G0391400 Rorug01G0391500 Rorug01G0391600 Rorug01G0391700 Rorug01G0391800 Rorug02G0061300 Rorug02G0207800 Rorug02G0378000 Rorug02G0378100 Rorug02G0378200 Rorug02G0378300 Rorug02G0378300 Rorug02G0378300 Rorug03G0168600 Rorug06G0412800 Rorug06G0412900 Rorug06G0413000
rosa_samantha Rh1AG231000 Rh1AG287500 Rh1AG402800 Rh1CG379000 Rh2BG440100 Rh2CG417400 Rh2DG271100
rosa_wichuraiana Rw0G023590 Rw0G023600 Rw1G020080 Rw1G025530 Rw1G025540 Rw1G035580 Rw1G035650 Rw1G035670 Rw1G035690 Rw1G035700 Rw1G035740 Rw1G035760 Rw1G035780 Rw1G035800 Rw2G020700 Rw2G035250 Rw4G005840 Rw4G005850 Rw4G005860 Rw4G005890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 332, 533
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 480
AciI CCGC 3 cut(s) 79, 358, 478
AclWI GGATC 6 cut(s) 227, 338, 490, 564, 674, 735
AcuI CTGAAG 2 cut(s) 397, 486
AdeI CACNNNGTG 1 cut(s) 570
AfaI GTAC 4 cut(s) 54, 182, 299, 402
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 248, 764
AhlI ACTAGT 1 cut(s) 745
AjnI CCWGG 1 cut(s) 807
AluBI AGCT 5 cut(s) 169, 381, 448, 470, 632
AluI AGCT 5 cut(s) 169, 381, 448, 470, 632
Alw26I GTCTC 2 cut(s) 402, 824
AlwI GGATC 6 cut(s) 227, 338, 490, 564, 674, 735
AoxI GGCC 1 cut(s) 810
ApeKI GCWGC 3 cut(s) 148, 374, 485
Asp700I GAANNNNTTC 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 335
BbvI GCAGC 3 cut(s) 135, 386, 497
BccI CCATC 3 cut(s) 338, 799, 821
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 1 cut(s) 605
BclI TGATCA 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 402, 824
BcuI ACTAGT 1 cut(s) 745
BfaI CTAG 2 cut(s) 560, 746
BfmI CTRYAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 605
BisI GCNGC 4 cut(s) 149, 359, 375, 486
BlsI GCNGC 4 cut(s) 150, 360, 376, 487
BmcAI AGTACT 2 cut(s) 54, 402
Bme1390I CCNGG 1 cut(s) 809
BmrFI CCNGG 1 cut(s) 809
BmsI GCATC 3 cut(s) 186, 370, 472
BpmI CTGGAG 1 cut(s) 791
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 201, 349
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 598
BseXI GCAGC 3 cut(s) 135, 386, 497
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 480
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 534
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 402, 824
BsnI GGCC 1 cut(s) 812
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
BspACI CCGC 3 cut(s) 79, 358, 478
BspANI GGCC 1 cut(s) 812
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 480
BspPI GGATC 6 cut(s) 227, 338, 490, 564, 674, 735
BsrDI GCAATG 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 3 cut(s) 118, 229, 769
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 4 cut(s) 171, 175, 379, 450
BstDEI CTNAG 2 cut(s) 165, 404
BstF5I GGATG 2 cut(s) 201, 349
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 8 cut(s) 135, 235, 333, 498, 534, 559, 669, 730
BstMAI GTCTC 2 cut(s) 402, 824
BstMBI GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 807
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 135, 386, 497
BstX2I RGATCY 3 cut(s) 232, 495, 556
BstYI RGATCY 3 cut(s) 232, 495, 556
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 1 cut(s) 812
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 2 cut(s) 201, 349
BtsI GCAGTG 2 cut(s) 424, 705
BtsIMutI CAGTG 3 cut(s) 225, 424, 705
Cac8I GCNNGC 4 cut(s) 171, 175, 379, 450
Csp6I GTAC 4 cut(s) 53, 181, 298, 401
CviAII CATG 3 cut(s) 160, 174, 568
CviQI GTAC 4 cut(s) 53, 181, 298, 401
DdeI CTNAG 2 cut(s) 165, 404
DpnI GATC 8 cut(s) 134, 234, 332, 497, 533, 558, 668, 729
DpnII GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
DraIII CACNNNGTG 1 cut(s) 570
DrdI GACNNNNNNGTC 2 cut(s) 332, 533
DseDI GACNNNNNNGTC 2 cut(s) 332, 533
Eco130I CCWWGG 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 397, 486
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 3 cut(s) 163, 177, 571
FatI CATG 3 cut(s) 159, 173, 567
FauI CCCGC 1 cut(s) 485
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 149, 359, 375, 486
FokI GGATG 2 cut(s) 208, 356
Fsp4HI GCNGC 4 cut(s) 149, 359, 375, 486
FspBI CTAG 2 cut(s) 560, 746
GluI GCNGC 4 cut(s) 149, 359, 375, 486
GsuI CTGGAG 1 cut(s) 791
HaeIII GGCC 1 cut(s) 812
HapII CCGG 1 cut(s) 111
Hin1II CATG 3 cut(s) 163, 177, 571
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 527, 675
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 223, 510, 751
Hpy188I TCNGA 6 cut(s) 212, 313, 366, 466, 645, 781
Hpy188III TCNNGA 1 cut(s) 560
Hpy8I GTNNAC 3 cut(s) 223, 510, 751
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 364, 601, 684
HpyCH4III ACNGT 3 cut(s) 118, 229, 769
HpyCH4V TGCA 9 cut(s) 35, 50, 151, 173, 177, 239, 272, 440, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 2 cut(s) 165, 404
Hsp92II CATG 3 cut(s) 163, 177, 571
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
LpnPI CCDG 8 cut(s) 117, 124, 249, 308, 611, 650, 794, 821
Lsp1109I GCAGC 3 cut(s) 135, 386, 497
LweI GCATC 3 cut(s) 186, 370, 472
MaeI CTAG 2 cut(s) 560, 746
MaeIII GTNAC 3 cut(s) 323, 472, 800
MalI GATC 8 cut(s) 134, 234, 332, 497, 533, 558, 668, 729
MboI GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
MboII GAAGA 4 cut(s) 94, 97, 599, 794
MflI RGATCY 3 cut(s) 232, 495, 556
MluCI AATT 3 cut(s) 386, 731, 775
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 6 cut(s) 36, 111, 360, 437, 657, 815
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 680
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 809
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
NlaIII CATG 3 cut(s) 163, 177, 571
NmuCI GTSAC 2 cut(s) 323, 472
NspI RCATGY 1 cut(s) 177
PaeI GCATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 675
PkrI GCNGC 4 cut(s) 150, 360, 376, 487
Ple19I CGATCG 1 cut(s) 534
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PsuI RGATCY 3 cut(s) 232, 495, 556
PvuI CGATCG 1 cut(s) 534
RsaI GTAC 4 cut(s) 54, 182, 299, 402
RsaNI GTAC 4 cut(s) 53, 181, 298, 401
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 4 cut(s) 149, 359, 375, 486
Sau3AI GATC 8 cut(s) 132, 232, 330, 495, 531, 556, 666, 727
ScaI AGTACT 2 cut(s) 54, 402
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 809
SfaNI GCATC 3 cut(s) 186, 370, 472
SfcI CTRYAG 1 cut(s) 228
SpeI ACTAGT 1 cut(s) 745
SphI GCATGC 1 cut(s) 177
Sse9I AATT 3 cut(s) 386, 731, 775
SsiI CCGC 3 cut(s) 79, 358, 478
SspMI CTAG 2 cut(s) 560, 746
StyD4I CCNGG 1 cut(s) 807
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 3 cut(s) 118, 229, 769
TaqI TCGA 2 cut(s) 201, 530
TasI AATT 3 cut(s) 386, 731, 775
TatI WGTACW 4 cut(s) 52, 180, 297, 400
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 675
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 3 cut(s) 232, 424, 705
TseFI GTSAC 2 cut(s) 323, 472
TseI GCWGC 3 cut(s) 148, 374, 485
Tsp45I GTSAC 2 cut(s) 323, 472
TspDTI ATGAA 3 cut(s) 600, 630, 731
TspRI CASTG 3 cut(s) 232, 424, 705
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 560, 746
ZrmI AGTACT 2 cut(s) 54, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.