Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014146

Physical Location & Seq

Genomic Coordinates Forward (+)

18542551 .. 18543978

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCCGGAGGAGGCGGATACGGCGGCGCATCGGGGAAAGTTGATTACGTCTTCAAAGTTGTTCTAATCGGAGATTCGGCTGTTGGGAAATCGCAACTACTTGCTCGATTCGCTAGAGACGAATTCAGCATGGATTCTAAAGCCACCATCGGCGTCGAGTTCCAAACTCGTACCCTCTCCATTGAACAAAAAAGCATTAAGGCTCAGATCTGGGATACCGCTGGTCAGGAAAGATACAGAGCCGTTACAAGCGCATACTACAGAGGAGCAGTTGGCGCAATGCTGGTTTATGATATGACGAAACGTGAGACCTTTGAGCATATTCCGCGTTGGCTTGAAGAACTGAGGGCGCACGCTGATAAGAACATTGTCATCATCCTTATTGGAAACAAGTCTGATCTAGAAGATCAAAGAGCTGTTCCCACTGAAGACGCTAAAGAGTTTGCTGAGAAGGAAGGACTCTTTTTCCTCGAGACCTCTGCTTTAAACGCAACCAATGTCGAAAACTCCTTCAACACTCTAATGACTCAGATATACAATACCGTGAACAAGAAGAATCTTGCATCTGAAGGCGACTCAAATAACCCCGGTTCATTGGCTGGTAAGAAGATTCTCATCCCAGGTTCTGGACAGGAGATTCCCGCTAAGACCAGCACTTGTTGTACTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

224

Amino Acids

24.41

Weight (kDa)

5.82

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	18 - 175	3.6e-14	ADP-ribosylation factor family
Ras	PF00071	19 - 179	2.1e-63	Ras family
Roc	PF08477	19 - 133	2.6e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	19 - 127	2.4e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39990 AT5G65270
fragaria_vesca	FvH4_1g20380
malus_domestica	MD01G1034200.v1.1 MD15G1321700.v1.1
prunus_persica	Prupe.6G191600_v2.0.a1
pyrus_communis	pycom15g28230
rosa_chinensis	RchiOBHm_Chr2g0112511
rosa_laevigata	RLG00000017987
rosa_multiflora	Rmu_sc0001499.1_g000060
rosa_roxburghii	Rroxscaffold_2G00131360
rosa_rugosa	Rorug02G0181400
rosa_samantha	Rh2AG234600 Rh2BG248200 Rh2CG239200 Rh2DG242200
rosa_wichuraiana	Rw2G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccII	CGCG	1 cut(s)	328
AciI	CCGC	5 cut(s)	15, 24, 219, 326, 642
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	2 cut(s)	447, 588
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	172, 664
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	55, 185, 338, 514
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	3 cut(s)	111, 302, 467
AlwNI	CAGNNNCTG	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	4 cut(s)	29, 254, 278, 352
AsuC2I	CCSGG	1 cut(s)	588
AvaI	CYCGRG	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	43, 435
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	37, 227
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	2 cut(s)	11, 208
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	111, 302, 467
BfaI	CTAG	2 cut(s)	114, 401
BfmI	CTRYAG	1 cut(s)	259
BfuI	GTATCC	2 cut(s)	11, 208
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	588, 621
BmeT110I	CYCGRG	1 cut(s)	470
BmrFI	CCNGG	2 cut(s)	588, 621
BmsI	GCATC	2 cut(s)	38, 572
BpiI	GAAGAC	2 cut(s)	43, 435
BpuMI	CCSGG	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	302, 467
BsaJI	CCNNGG	2 cut(s)	586, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	586, 619
BseGI	GGATG	2 cut(s)	375, 615
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	218, 335, 438, 542
BseRI	GAGGAG	2 cut(s)	24, 279
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	6, 588
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	3 cut(s)	111, 302, 467
BsmBI	CGTCTC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	302, 467
BsoBI	CYCGRG	1 cut(s)	470
Bsp143I	GATC	3 cut(s)	207, 397, 406
BspACI	CCGC	5 cut(s)	15, 24, 219, 326, 642
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	217, 336, 439, 541
BspFNI	CGCG	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	302, 467
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	586, 619
BssMI	GATC	3 cut(s)	207, 397, 406
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	544
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	5 cut(s)	204, 344, 447, 528, 645
BstF5I	GGATG	2 cut(s)	375, 615
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	4 cut(s)	29, 254, 278, 352
BstKTI	GATC	3 cut(s)	210, 400, 409
BstMAI	GTCTC	3 cut(s)	111, 302, 467
BstMBI	GATC	3 cut(s)	207, 397, 406
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 110, 275, 325, 488
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	586, 619
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	328
BstV2I	GAAGAC	2 cut(s)	43, 435
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuI	GTATCC	2 cut(s)	11, 208
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	375, 615
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	4 cut(s)	29, 254, 278, 352
CseI	GACGC	2 cut(s)	142, 440
Csp6I	GTAC	2 cut(s)	171, 663
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	8 cut(s)	5, 80, 143, 203, 242, 334, 416, 599
CviKI_1	RGCY	8 cut(s)	5, 80, 143, 203, 242, 334, 416, 599
CviQI	GTAC	2 cut(s)	171, 663
DdeI	CTNAG	5 cut(s)	204, 344, 447, 528, 645
DpnI	GATC	3 cut(s)	209, 399, 408
DpnII	GATC	3 cut(s)	207, 397, 406
DraI	TTTAAA	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	302, 467
Eco57I	CTGAAG	2 cut(s)	447, 588
Eco88I	CYCGRG	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	619
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	133
FaiI	YATR	6 cut(s)	131, 256, 291, 296, 321, 535
FatI	CATG	1 cut(s)	129
FauI	CCCGC	1 cut(s)	649
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	2 cut(s)	362, 602
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	2 cut(s)	114, 401
GlaI	GCGC	4 cut(s)	28, 253, 277, 351
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 588
HgaI	GACGC	2 cut(s)	142, 440
HhaI	GCGC	4 cut(s)	29, 254, 278, 352
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	4 cut(s)	27, 252, 276, 350
HinP1I	GCGC	4 cut(s)	27, 252, 276, 350
HinfI	GANTC	9 cut(s)	74, 108, 134, 459, 526, 556, 575, 610, 637
HpaII	CCGG	2 cut(s)	6, 588
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	5 cut(s)	71, 207, 397, 531, 568
Hpy188III	TCNNGA	5 cut(s)	227, 401, 472, 627, 672
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	445, 449, 520, 563
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	2 cut(s)	48, 304
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 110, 275, 325, 488
HpyF3I	CTNAG	5 cut(s)	204, 344, 447, 528, 645
HpySE526I	ACGT	2 cut(s)	48, 304
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	4 cut(s)	27, 252, 276, 350
Kzo9I	GATC	3 cut(s)	207, 397, 406
LmnI	GCTCC	1 cut(s)	266
LweI	GCATC	2 cut(s)	38, 572
MaeI	CTAG	2 cut(s)	114, 401
MaeII	ACGT	2 cut(s)	48, 304
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	209, 399, 408
MboI	GATC	3 cut(s)	207, 397, 406
MboII	GAAGA	7 cut(s)	43, 350, 416, 440, 565, 619, 660
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	453, 520, 569
MnlI	CCTC	6 cut(s)	5, 185, 257, 339, 479, 487
MseI	TTAA	2 cut(s)	198, 485
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	6, 588
MspR9I	CCNGG	2 cut(s)	588, 621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	5 cut(s)	21, 110, 275, 325, 488
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	3 cut(s)	207, 397, 406
NlaIII	CATG	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	6 cut(s)	74, 108, 134, 556, 610, 637
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	3 cut(s)	453, 520, 569
PpsI	GAGTC	3 cut(s)	453, 520, 569
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	2 cut(s)	172, 664
RsaNI	GTAC	2 cut(s)	171, 663
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	198, 485
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	3 cut(s)	207, 397, 406
SchI	GAGTC	3 cut(s)	453, 520, 569
ScrFI	CCNGG	2 cut(s)	588, 621
SetI	ASST	6 cut(s)	51, 307, 314, 418, 479, 625
SfaNI	GCATC	2 cut(s)	38, 572
SfcI	CTRYAG	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	5 cut(s)	15, 24, 219, 326, 642
SspMI	CTAG	2 cut(s)	114, 401
StyD4I	CCNGG	2 cut(s)	586, 619
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	2 cut(s)	51, 307
TaqI	TCGA	4 cut(s)	106, 156, 471, 501
TasI	AATT	1 cut(s)	122
TatI	WGTACW	1 cut(s)	662
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	6 cut(s)	74, 108, 134, 556, 610, 637
Tru1I	TTAA	2 cut(s)	198, 485
Tru9I	TTAA	2 cut(s)	198, 485
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	582
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	122
XbaI	TCTAGA	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	470
XspI	CTAG	2 cut(s)	114, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.