Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014146

Physical Location & Seq

Genomic Coordinates Reverse (-)

24745769 .. 24749096

Gene Structure 3328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG239200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAGTTATGGAGATTCGAGCCAGAAGATTGACTATGTGTTCAAGATTGTGCTGATTGGGGACTCTGCGGTGGGCAAGTCTCAGATACTCGCCAGGTTTGCAAGGAACGAGTTCAGCCTGGACTCCAAGGCCACTATTGGAGTTGAGTTTCAGACCAGGACTCTGGTTATTGAGCACAAGAGTGTTAAAGCTCAGATCTGGGACACTGCTGGCCAAGAAAGATATAGAGCGGTTACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGCTGGTTTATGACATAACCAAACGCCAGACTTTTGATCACATACCCCGCTGGCTGGAAGAGCTGCGTAGCCATGCTGACAAGAATATTGTCATCATTCTAATAGGCAACAAAAGTGACCTCGAGGACCAGCGTGCAGTTCCCACTGAAGATGCCAAAGAATTTGCTCAAAAGGAAGGACTGTTTTTCTTGGAGACCTCAGCATTGGAATCAACTAATGTTGAGAGTGCCTTCTTGACTGTGTTGACAGAGATATTCAACATTGTTAACAAGAAGCACCTGGCTGCTAGTGAAAATCAAGGCAATGGAAACCCTGCATCTCTGTCAGGTAAGAAGATCCTCGTCCCAGGCCCAGCTCAAGTGATCCCCCCCAAGAGCAAATGCTGTACATCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

222

Amino Acids

24.54

Weight (kDa)

7.74

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 135	4.7e-14	ADP-ribosylation factor family
Ras	PF00071	16 - 175	2.7e-63	Ras family
Roc	PF08477	16 - 130	1.4e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39990 AT5G65270
fragaria_vesca	FvH4_1g20380
malus_domestica	MD01G1034200.v1.1 MD15G1321700.v1.1
prunus_persica	Prupe.6G191600_v2.0.a1
pyrus_communis	pycom15g28230
rosa_chinensis	RchiOBHm_Chr2g0112511
rosa_laevigata	RLG00000017987
rosa_multiflora	Rmu_sc0001499.1_g000060
rosa_roxburghii	Rroxscaffold_2G00131360
rosa_rugosa	Rorug02G0181400
rosa_samantha	Rh2AG234600 Rh2BG248200 Rh2CG239200 Rh2DG242200
rosa_wichuraiana	Rw2G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	233
AciI	CCGC	3 cut(s)	71, 233, 319
AclWI	GGATC	2 cut(s)	601, 628
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	46, 529
AjnI	CCWGG	5 cut(s)	95, 120, 158, 549, 616
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	194, 334, 626
AluI	AGCT	3 cut(s)	194, 334, 626
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	87, 458
AlwI	GGATC	2 cut(s)	601, 628
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	3 cut(s)	132, 214, 619
ApeKI	GCWGC	2 cut(s)	334, 554
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	397, 620
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	321, 541
BciT130I	CCWGG	5 cut(s)	97, 122, 160, 551, 618
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	87, 458
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	250
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	2 cut(s)	335, 555
BlsI	GCNGC	2 cut(s)	336, 556
Bme1390I	CCNGG	5 cut(s)	97, 122, 160, 551, 618
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	397, 620
BmrFI	CCNGG	5 cut(s)	97, 122, 160, 551, 618
BmsI	GCATC	2 cut(s)	412, 596
Bpu10I	CCTNAGC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	129, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse3DI	GCAATG	2 cut(s)	276, 580
BseBI	CCWGG	5 cut(s)	97, 122, 160, 551, 618
BseDI	CCNNGG	2 cut(s)	129, 616
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	2 cut(s)	276, 580
BseMII	CTCAG	3 cut(s)	98, 209, 483
BseXI	GCAGC	2 cut(s)	321, 541
BseYI	CCCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	134, 216, 621
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	3 cut(s)	77, 218, 599
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	87, 458
BsmFI	GGGAC	3 cut(s)	77, 218, 599
BsnI	GGCC	3 cut(s)	134, 216, 621
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	198, 307, 606, 633
BspACI	CCGC	3 cut(s)	71, 233, 319
BspANI	GGCC	3 cut(s)	134, 216, 621
BspCNI	CTCAG	3 cut(s)	97, 208, 482
BspPI	GGATC	2 cut(s)	601, 628
BspQI	GCTCTTC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	276, 580
BsrGI	TGTACA	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	129, 616
BssMI	GATC	4 cut(s)	198, 307, 606, 633
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	5 cut(s)	97, 122, 160, 551, 618
Bst4CI	ACNGT	2 cut(s)	453, 511
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	656
BstC8I	GCNNGC	3 cut(s)	214, 323, 405
BstDEI	CTNAG	3 cut(s)	84, 195, 469
BstKTI	GATC	4 cut(s)	201, 310, 609, 636
BstMAI	GTCTC	2 cut(s)	87, 458
BstMBI	GATC	4 cut(s)	198, 307, 606, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 266, 331
BstNI	CCWGG	5 cut(s)	97, 122, 160, 551, 618
BstSCI	CCNGG	5 cut(s)	95, 120, 158, 549, 616
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	321, 541
BstX2I	RGATCY	2 cut(s)	198, 606
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	2 cut(s)	198, 606
BsuRI	GGCC	3 cut(s)	134, 216, 621
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 414
Cac8I	GCNNGC	3 cut(s)	214, 323, 405
Cfr13I	GGNCC	2 cut(s)	397, 620
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	3 cut(s)	84, 195, 469
DpnI	GATC	4 cut(s)	200, 309, 608, 635
DpnII	GATC	4 cut(s)	198, 307, 606, 633
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	392
EcoRII	CCWGG	5 cut(s)	95, 120, 158, 549, 616
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	347
FaiI	YATR	8 cut(s)	12, 39, 228, 247, 282, 287, 314, 345
FaqI	GGGAC	3 cut(s)	77, 218, 599
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	326
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	2 cut(s)	335, 555
Fsp4HI	GCNGC	2 cut(s)	335, 555
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	2 cut(s)	335, 555
GsaI	CCCAGC	1 cut(s)	626
HaeIII	GGCC	3 cut(s)	134, 216, 621
Hin1II	CATG	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	516, 538
HindII	GTYRAC	2 cut(s)	516, 538
HinfI	GANTC	5 cut(s)	17, 65, 125, 163, 479
HpaI	GTTAAC	1 cut(s)	538
Hpy166II	GTNNAC	2 cut(s)	516, 538
Hpy188I	TCNGA	3 cut(s)	87, 156, 198
Hpy188III	TCNNGA	2 cut(s)	46, 505
Hpy8I	GTNNAC	2 cut(s)	516, 538
HpyAV	CCTTC	2 cut(s)	440, 511
HpyCH4III	ACNGT	2 cut(s)	453, 511
HpyCH4V	TGCA	4 cut(s)	104, 245, 407, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 266, 331
HpyF3I	CTNAG	3 cut(s)	84, 195, 469
Hsp92II	CATG	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	307
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	198, 307, 606, 633
LguI	GCTCTTC	1 cut(s)	324
Lsp1109I	GCAGC	2 cut(s)	321, 541
LweI	GCATC	2 cut(s)	412, 596
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	235, 386
MalI	GATC	4 cut(s)	200, 309, 608, 635
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	4 cut(s)	198, 307, 606, 633
MboII	GAAGA	4 cut(s)	40, 341, 431, 616
MflI	RGATCY	2 cut(s)	198, 606
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	1 cut(s)	431
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	3 cut(s)	59, 119, 157
MnlI	CCTC	4 cut(s)	388, 401, 478, 620
Mox20I	TGGCCA	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	2 cut(s)	189, 537
MslI	CAYNNNNRTG	2 cut(s)	183, 664
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	321
MspR9I	CCNGG	5 cut(s)	97, 122, 160, 551, 618
MvaI	CCWGG	5 cut(s)	97, 122, 160, 551, 618
MwoI	GCNNNNNNNGC	3 cut(s)	101, 266, 331
NdeII	GATC	4 cut(s)	198, 307, 606, 633
NlaIII	CATG	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	17, 479
PkrI	GCNGC	2 cut(s)	336, 556
PleI	GAGTC	3 cut(s)	59, 119, 157
PpsI	GAGTC	3 cut(s)	59, 119, 157
Psp6I	CCWGG	5 cut(s)	95, 120, 158, 549, 616
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	5 cut(s)	95, 120, 158, 549, 616
PspPI	GGNCC	2 cut(s)	397, 620
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	198, 606
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	2 cut(s)	183, 664
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	189, 537
SatI	GCNGC	2 cut(s)	335, 555
Sau3AI	GATC	4 cut(s)	198, 307, 606, 633
Sau96I	GGNCC	2 cut(s)	397, 620
SchI	GAGTC	3 cut(s)	59, 119, 157
ScrFI	CCNGG	5 cut(s)	97, 122, 160, 551, 618
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	8 cut(s)	101, 196, 336, 393, 470, 552, 601, 628
SfaNI	GCATC	2 cut(s)	412, 596
SfcI	CTRYAG	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	183, 664
SmlI	CTYRAG	2 cut(s)	392, 627
SmoI	CTYRAG	2 cut(s)	392, 627
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	3 cut(s)	71, 233, 319
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	5 cut(s)	95, 120, 158, 549, 616
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	453, 511
TaqI	TCGA	2 cut(s)	20, 393
TasI	AATT	1 cut(s)	431
TatI	WGTACW	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	17, 479
Tru1I	TTAA	2 cut(s)	189, 537
Tru9I	TTAA	2 cut(s)	189, 537
TscAI	CASTG	2 cut(s)	214, 421
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	334, 554
Tsp45I	GTSAC	1 cut(s)	386
TspRI	CASTG	2 cut(s)	214, 421
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.