Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014146

Physical Location & Seq

Genomic Coordinates Forward (+)

11704956 .. 11707390

Gene Structure 2435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1034200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAGTTATGGGGATGCGAGCCAGAAGGTAGACTATGTGTTCAAGGTGGTACTGATAGGAGACTCTGCGGTGGGCAAGTCTCAGATTCTGGCCAGGTTTGCCCGAAACGAGTTTAGCTTGGACTCCAAGGCCACCATCGGTGTCGAGTTTCAGACTCGGACCCTCCTCATCGAGCACAAGAGTGTCAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCGGTGACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGCTGGTCTATGATATAACCAAACGCCAGACCTTTGACCACATACCACGTTGGCTGGAAGAGCTGCGCAGTCATGCGGACAAGAACATAGTCATCATTCTGATAGGCAACAAAAGTGATCTCGAGAACCAGCGTGCAGTCCCCACTGAAGATGCCAAAGAATTTGCTGAAAAGGAAGGACTTTTCTTCTTAGAGACCTCAGCCCTGGAAGCAACAAATGTAGAGAATGCTTTCTCGACTGTGTTGACAGAGGTATTCAACATCGTTAACAAGAAGAGCCTTGCTGCCAACGAAAATCAAGGTAACGGGAACCCTGCACCTCTGGCTGGTAAGAAAATCCTTATCCCGGGCCCTGCACAAGAAATCCCAGCTAAGAGCAAGGCATGCTGTACGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

223

Amino Acids

24.43

Weight (kDa)

6.85

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 145	5.9e-14	ADP-ribosylation factor family
Ras	PF00071	16 - 175	3.6e-63	Ras family
Roc	PF08477	16 - 130	2.2e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39990 AT5G65270
fragaria_vesca	FvH4_1g20380
malus_domestica	MD01G1034200.v1.1 MD15G1321700.v1.1
prunus_persica	Prupe.6G191600_v2.0.a1
pyrus_communis	pycom15g28230
rosa_chinensis	RchiOBHm_Chr2g0112511
rosa_laevigata	RLG00000017987
rosa_multiflora	Rmu_sc0001499.1_g000060
rosa_roxburghii	Rroxscaffold_2G00131360
rosa_rugosa	Rorug02G0181400
rosa_samantha	Rh2AG234600 Rh2BG248200 Rh2CG239200 Rh2DG242200
rosa_wichuraiana	Rw2G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	3 cut(s)	71, 233, 347
AcoI	YGGCCR	2 cut(s)	93, 214
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	54, 661
AfiI	CCNNNNNNNGG	2 cut(s)	596, 616
AgsI	TTSAA	2 cut(s)	46, 529
AjnI	CCWGG	2 cut(s)	95, 474
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	120, 334, 641
AluI	AGCT	3 cut(s)	120, 334, 641
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	57, 87, 458
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	2 cut(s)	392, 616
AoxI	GGCC	4 cut(s)	93, 132, 214, 619
ApaI	GGGCCC	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	334, 554
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	3 cut(s)	162, 619, 620
AsuC2I	CCSGG	2 cut(s)	617, 618
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	2 cut(s)	392, 616
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	623
BalI	TGGCCA	2 cut(s)	95, 216
BanII	GRGCYC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	321, 541
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	97, 476
BcnI	CCSGG	2 cut(s)	617, 618
BcoDI	GTCTC	3 cut(s)	57, 87, 458
BfmI	CTRYAG	1 cut(s)	250
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	2 cut(s)	335, 555
BlsI	GCNGC	2 cut(s)	336, 556
Bme1390I	CCNGG	4 cut(s)	97, 476, 617, 618
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	2 cut(s)	392, 616
BmgT120I	GGNCC	3 cut(s)	162, 619, 620
BmiI	GGNNCC	3 cut(s)	164, 581, 621
BmrFI	CCNGG	4 cut(s)	97, 476, 617, 618
BmsI	GCATC	2 cut(s)	7, 412
Bpu10I	CCTNAGC	1 cut(s)	469
BpuMI	CCSGG	2 cut(s)	617, 618
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	129, 474, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 616
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	97, 476
BseDI	CCNNGG	3 cut(s)	129, 474, 616
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	596, 616
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	98, 209, 483
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	2 cut(s)	321, 541
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	3 cut(s)	426, 570, 609
BshFI	GGCC	4 cut(s)	95, 134, 216, 621
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	2 cut(s)	392, 616
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	2 cut(s)	218, 395
BslI	CCNNNNNNNGG	2 cut(s)	596, 616
BsmAI	GTCTC	3 cut(s)	57, 87, 458
BsmFI	GGGAC	2 cut(s)	218, 395
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	4 cut(s)	95, 134, 216, 621
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	2 cut(s)	392, 616
Bsp120I	GGGCCC	1 cut(s)	619
Bsp1286I	GDGCHC	2 cut(s)	180, 623
Bsp143I	GATC	2 cut(s)	198, 388
BspACI	CCGC	3 cut(s)	71, 233, 347
BspANI	GGCC	4 cut(s)	95, 134, 216, 621
BspCNI	CTCAG	3 cut(s)	97, 208, 482
BspLI	GGNNCC	3 cut(s)	164, 581, 621
BspQI	GCTCTTC	2 cut(s)	324, 539
BspTNI	GGTCTC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	129, 474, 616
BssMI	GATC	2 cut(s)	198, 388
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	97, 476
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	2 cut(s)	324, 539
BstAPI	GCANNNNNTGC	1 cut(s)	654
BstC8I	GCNNGC	4 cut(s)	22, 214, 405, 655
BstDEI	CTNAG	5 cut(s)	84, 195, 460, 469, 642
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	201, 391
BstMAI	GTCTC	3 cut(s)	57, 87, 458
BstMBI	GATC	2 cut(s)	198, 388
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 266, 331, 479, 593, 654
BstNI	CCWGG	2 cut(s)	97, 476
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	4 cut(s)	95, 474, 615, 616
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	321, 541
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	4 cut(s)	95, 134, 216, 621
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	207, 414
Cac8I	GCNNGC	4 cut(s)	22, 214, 405, 655
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	162, 619, 620
Cfr9I	CCCGGG	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	53, 660
CviAII	CATG	2 cut(s)	344, 654
CviQI	GTAC	2 cut(s)	53, 660
DdeI	CTNAG	5 cut(s)	84, 195, 460, 469, 642
DpnI	GATC	2 cut(s)	200, 390
DpnII	GATC	2 cut(s)	198, 388
EaeI	YGGCCR	2 cut(s)	93, 214
Eam1104I	CTCTTC	2 cut(s)	324, 539
EarI	CTCTTC	2 cut(s)	324, 539
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	2 cut(s)	392, 616
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	95, 474
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	347, 657
FaqI	GGGAC	2 cut(s)	218, 395
FatI	CATG	2 cut(s)	343, 653
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	335, 555
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	2 cut(s)	335, 555
FspI	TGCGCA	1 cut(s)	338
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	335, 555
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	4 cut(s)	95, 134, 216, 621
HapII	CCGG	1 cut(s)	617
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	347, 657
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	2 cut(s)	516, 538
HindII	GTYRAC	2 cut(s)	516, 538
HinfI	GANTC	4 cut(s)	65, 88, 125, 157
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	34, 516, 538
Hpy188I	TCNGA	5 cut(s)	87, 156, 162, 198, 372
Hpy188III	TCNNGA	4 cut(s)	392, 394, 505, 666
Hpy8I	GTNNAC	3 cut(s)	34, 516, 538
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	2 cut(s)	22, 440
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	2 cut(s)	319, 662
HpyCH4V	TGCA	4 cut(s)	245, 407, 587, 626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 266, 331, 479, 593, 654
HpyF3I	CTNAG	5 cut(s)	84, 195, 460, 469, 642
HpySE526I	ACGT	2 cut(s)	319, 662
Hsp92II	CATG	2 cut(s)	347, 657
HspAI	GCGC	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	198, 388
LguI	GCTCTTC	2 cut(s)	324, 539
Lsp1109I	GCAGC	2 cut(s)	321, 541
LweI	GCATC	2 cut(s)	7, 412
MaeII	ACGT	2 cut(s)	319, 662
MaeIII	GTNAC	2 cut(s)	235, 572
MalI	GATC	2 cut(s)	200, 390
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	2 cut(s)	198, 388
MboII	GAAGA	4 cut(s)	341, 431, 448, 556
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	180, 623
MlsI	TGGCCA	2 cut(s)	95, 216
MluCI	AATT	1 cut(s)	431
MluNI	TGGCCA	2 cut(s)	95, 216
MlyI	GAGTC	3 cut(s)	59, 119, 151
MnlI	CCTC	5 cut(s)	176, 179, 478, 514, 600
Mox20I	TGGCCA	2 cut(s)	95, 216
MroXI	GAANNNNTTC	1 cut(s)	500
MscI	TGGCCA	2 cut(s)	95, 216
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	2 cut(s)	95, 216
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	4 cut(s)	97, 476, 617, 618
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	2 cut(s)	97, 476
MwoI	GCNNNNNNNGC	6 cut(s)	101, 266, 331, 479, 593, 654
NciI	CCSGG	2 cut(s)	617, 618
NdeII	GATC	2 cut(s)	198, 388
NlaIII	CATG	2 cut(s)	347, 657
NlaIV	GGNNCC	3 cut(s)	164, 581, 621
NmuCI	GTSAC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	338
NspI	RCATGY	1 cut(s)	657
OliI	CACNNNNGTG	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	657
PaeR7I	CTCGAG	1 cut(s)	392
PciSI	GCTCTTC	2 cut(s)	324, 539
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	336, 556
PleI	GAGTC	3 cut(s)	59, 119, 151
PpsI	GAGTC	3 cut(s)	59, 119, 151
Psp6I	CCWGG	2 cut(s)	95, 474
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	2 cut(s)	95, 474
PspN4I	GGNNCC	3 cut(s)	164, 581, 621
PspOMI	GGGCCC	1 cut(s)	619
PspPI	GGNCC	3 cut(s)	162, 619, 620
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	2 cut(s)	54, 661
RsaNI	GTAC	2 cut(s)	53, 660
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	2 cut(s)	324, 539
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	2 cut(s)	335, 555
Sau3AI	GATC	2 cut(s)	198, 388
Sau96I	GGNCC	3 cut(s)	162, 619, 620
SchI	GAGTC	3 cut(s)	59, 119, 151
ScrFI	CCNGG	4 cut(s)	97, 476, 617, 618
SduI	GDGCHC	2 cut(s)	180, 623
SfaNI	GCATC	2 cut(s)	7, 412
SfcI	CTRYAG	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	3 cut(s)	71, 233, 347
StyD4I	CCNGG	4 cut(s)	95, 474, 615, 616
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	2 cut(s)	322, 665
TaqI	TCGA	4 cut(s)	147, 174, 393, 506
TasI	AATT	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	2 cut(s)	214, 421
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	334, 554
Tsp45I	GTSAC	1 cut(s)	235
TspMI	CCCGGG	1 cut(s)	616
TspRI	CASTG	2 cut(s)	214, 421
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	1 cut(s)	657
XhoI	CTCGAG	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.