Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014146

Physical Location & Seq

Genomic Coordinates Forward (+)

19874976 .. 19877439

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGAGTGGAGGAGGATATGGAGACTCGAACCAGAAGATAGACTATGTGTTCAAGGTGGTGCTGATAGGGGACTCTGCAGTGGGCAAGTCTCAGATTCTGGCCAGGTTTGCTAGAAACGAGTTTAGCTTGGATTCTAAGGCCACCATCGGCGTTGAGTTTCAGACCAGGACCCTTATCATCGAGCACAAGAGTGTTAAAGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCAGTTACAAGTGCATACTACAGGGGCGCTGTTGGGGCAATGCTCGTCTATGATATAACCAAACGCCAGAGCTTTGATCACATACCCCGTTGGTTGGAAGAGCTGCGTAGCCACGCCGACAAGAACATTGTCATCATTCTGATAGGCAACAAAAGTGATCTTGAGAACCAGCGTGTGATCCCCACTGAAGATGCCAAAGAGTTTGCTCAAAAGGAAGGACTTTTTTTCTTGGAGACCTCAGCACTGGAATCAACAAACGTGGAGTCTGCTTTCTTGACTGTGTTGACAGAGATATTCAACATTGTTAACAAGAAGAGCTTGGCCGCCAGTGAAAATCAAGCTAATGGCAACCCTGCATCTCTGTCTGGTAAGAAGATCGTCATCCCAGGCCCTGCACAAGAAATCCCAGCTAAGAGCAAGGTGTGCTGTACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

226

Amino Acids

24.72

Weight (kDa)

7.72

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39990 AT5G65270
fragaria_vesca	FvH4_1g20380
malus_domestica	MD01G1034200.v1.1 MD15G1321700.v1.1
prunus_persica	Prupe.6G191600_v2.0.a1
pyrus_communis	pycom15g28230
rosa_chinensis	RchiOBHm_Chr2g0112511
rosa_laevigata	RLG00000017987
rosa_multiflora	Rmu_sc0001499.1_g000060
rosa_roxburghii	Rroxscaffold_2G00131360
rosa_rugosa	Rorug02G0181400
rosa_samantha	Rh2AG234600 Rh2BG248200 Rh2CG239200 Rh2DG242200
rosa_wichuraiana	Rw2G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	3 cut(s)	102, 223, 561
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	55, 538
AjnI	CCWGG	3 cut(s)	104, 167, 625
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	7 cut(s)	129, 203, 312, 343, 558, 581, 650
AluI	AGCT	7 cut(s)	129, 203, 312, 343, 558, 581, 650
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	3 cut(s)	18, 96, 467
AlwI	GGATC	1 cut(s)	412
AlwNI	CAGNNNCTG	2 cut(s)	100, 632
AoxI	GGCC	5 cut(s)	102, 141, 223, 561, 628
ApeKI	GCWGC	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	171, 629
AvaII	GGWCC	1 cut(s)	171
BalI	TGGCCA	2 cut(s)	104, 225
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	3 cut(s)	106, 169, 627
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	18, 96, 467
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	78, 259
BfoI	RGCGCY	1 cut(s)	270
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	2 cut(s)	344, 564
BlsI	GCNGC	2 cut(s)	345, 565
Bme1390I	CCNGG	3 cut(s)	106, 169, 627
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 629
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	106, 169, 627
BmsI	GCATC	2 cut(s)	421, 605
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	489, 567
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	620
BseBI	CCWGG	3 cut(s)	106, 169, 627
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	1 cut(s)	621
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	107, 218, 492
BseNI	ACTGG	2 cut(s)	489, 567
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	618
BshFI	GGCC	5 cut(s)	104, 143, 225, 563, 630
BsiHKAI	GWGCWC	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	86, 227
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	3 cut(s)	18, 96, 467
BsmFI	GGGAC	2 cut(s)	86, 227
BsnI	GGCC	5 cut(s)	104, 143, 225, 563, 630
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	668
Bsp143I	GATC	5 cut(s)	207, 316, 397, 417, 615
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	5 cut(s)	104, 143, 225, 563, 630
BspCNI	CTCAG	3 cut(s)	106, 217, 491
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	2 cut(s)	333, 548
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	285
BsrGI	TGTACA	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	489, 567
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	5 cut(s)	207, 316, 397, 417, 615
Bst2UI	CCWGG	3 cut(s)	106, 169, 627
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	333, 548
BstAPI	GCANNNNNTGC	1 cut(s)	663
BstAUI	TGTACA	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	5 cut(s)	93, 138, 204, 478, 651
BstF5I	GGATG	1 cut(s)	621
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	210, 319, 400, 420, 618
BstMAI	GTCTC	3 cut(s)	18, 96, 467
BstMBI	GATC	5 cut(s)	207, 316, 397, 417, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 275, 663
BstNI	CCWGG	3 cut(s)	106, 169, 627
BstSCI	CCNGG	3 cut(s)	104, 167, 625
BstSFI	CTRYAG	2 cut(s)	78, 259
BstV1I	GCAGC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	5 cut(s)	104, 143, 225, 563, 630
BtsCI	GGATG	1 cut(s)	621
BtsI	GCAGTG	2 cut(s)	87, 216
BtsIMutI	CAGTG	5 cut(s)	87, 216, 423, 482, 574
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	2 cut(s)	100, 632
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	171, 629
Csp6I	GTAC	1 cut(s)	669
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	5 cut(s)	93, 138, 204, 478, 651
DpnI	GATC	5 cut(s)	209, 318, 399, 419, 617
DpnII	GATC	5 cut(s)	207, 316, 397, 417, 615
EaeI	YGGCCR	3 cut(s)	102, 223, 561
Eam1104I	CTCTTC	2 cut(s)	333, 548
EarI	CTCTTC	2 cut(s)	333, 548
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	447
EcoO109I	RGGNCCY	2 cut(s)	171, 629
EcoRII	CCWGG	3 cut(s)	104, 167, 625
FaiI	YATR	7 cut(s)	21, 48, 237, 256, 291, 296, 323
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	2 cut(s)	86, 227
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	344, 564
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	344, 564
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	2 cut(s)	344, 564
GsaI	CCCAGC	1 cut(s)	650
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	104, 143, 225, 563, 630
HhaI	GCGC	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	2 cut(s)	525, 547
HindII	GTYRAC	2 cut(s)	525, 547
HinfI	GANTC	6 cut(s)	26, 74, 97, 134, 488, 503
HpaI	GTTAAC	1 cut(s)	547
Hpy166II	GTNNAC	2 cut(s)	525, 547
Hpy188I	TCNGA	4 cut(s)	96, 165, 207, 381
Hpy188III	TCNNGA	3 cut(s)	401, 514, 675
Hpy8I	GTNNAC	2 cut(s)	525, 547
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	80, 254, 596, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 275, 663
HpyF3I	CTNAG	5 cut(s)	93, 138, 204, 478, 651
HpySE526I	ACGT	1 cut(s)	498
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	207, 316, 397, 417, 615
LguI	GCTCTTC	2 cut(s)	333, 548
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	2 cut(s)	421, 605
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	209, 318, 399, 419, 617
MboI	GATC	5 cut(s)	207, 316, 397, 417, 615
MboII	GAAGA	5 cut(s)	49, 350, 440, 565, 625
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	2 cut(s)	104, 225
MluNI	TGGCCA	2 cut(s)	104, 225
MlyI	GAGTC	3 cut(s)	20, 68, 512
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	3 cut(s)	5, 8, 487
Mox20I	TGGCCA	2 cut(s)	104, 225
MscI	TGGCCA	2 cut(s)	104, 225
MseI	TTAA	2 cut(s)	198, 546
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	2 cut(s)	104, 225
MspR9I	CCNGG	3 cut(s)	106, 169, 627
MvaI	CCWGG	3 cut(s)	106, 169, 627
MwoI	GCNNNNNNNGC	3 cut(s)	110, 275, 663
NdeII	GATC	5 cut(s)	207, 316, 397, 417, 615
NlaIV	GGNNCC	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	192
PciSI	GCTCTTC	2 cut(s)	333, 548
PfeI	GAWTC	3 cut(s)	97, 134, 488
PkrI	GCNGC	2 cut(s)	345, 565
PleI	GAGTC	3 cut(s)	20, 68, 511
PpsI	GAGTC	3 cut(s)	20, 68, 511
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	104, 167, 625
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	3 cut(s)	104, 167, 625
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	171, 629
PspPPI	RGGWCCY	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	82
PstNI	CAGNNNCTG	2 cut(s)	100, 632
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	2 cut(s)	333, 548
SaqAI	TTAA	2 cut(s)	198, 546
SatI	GCNGC	2 cut(s)	344, 564
Sau3AI	GATC	5 cut(s)	207, 316, 397, 417, 615
Sau96I	GGNCC	2 cut(s)	171, 629
SchI	GAGTC	3 cut(s)	20, 68, 512
ScrFI	CCNGG	3 cut(s)	106, 169, 627
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	421, 605
SfcI	CTRYAG	2 cut(s)	78, 259
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	104, 167, 625
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	2 cut(s)	29, 183
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	3 cut(s)	97, 134, 488
Tru1I	TTAA	2 cut(s)	198, 546
Tru9I	TTAA	2 cut(s)	198, 546
TscAI	CASTG	5 cut(s)	87, 223, 430, 489, 574
TseI	GCWGC	1 cut(s)	343
TspRI	CASTG	5 cut(s)	87, 223, 430, 489, 574
VpaK11BI	GGWCC	1 cut(s)	171
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.