Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014146

Physical Location & Seq

Genomic Coordinates Forward (+)

26083216 .. 26084832

Gene Structure 1617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACTAGTGGAGGAGGATACGGAGATCCGTCGCAGAAGATTGATTATGTGTTCAAAGTGGTGTTGATCGGCGATTCCGCGGTTGGGAAATCACAGATACTGGCTCGTTATGCTAGAGACGAATTCAGTTTGGATTCTAAGGCCACCATCGGCGTTGAGTTTCAGACTCGGACGCTTGTTATCGATCACAAGAGTGTTAAGGCTCAGATCTGGGATACCGCCGGCCAAGAACGATACAGAGCAGTAACAAGTGCATATTACCGAGGAGCGGTTGGGGCGATGTTGGTGTATGACATAACCAGACGCCAAACCTTTGACCATATCCCAAGATGGTTAGAAGAACTACGTGCTCATGCAGATAAGAACATTGTGATAATCCTTATTGGGAACAAGTCAGATCTTGTGGATCAACGAGCTATACCGACAGAAGATGCGAAAGAATTTGCGGAGAAAGAAGGTTTGTTCTTCTTGGAGACATCTGCATTTAACGCAACCAATGTTGAGAGCGCTTTCTCCACGGTTTTGACTGAGATCTTCAACATTGTGAACAAGAAAAGTCTGGCTGCGAGTGAAGATCAAGAGAATGGTAATCCCGGGTCGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGTCAAGTGATACCAAACAAGAGTAACATGTGTTGTAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

226

Amino Acids

24.84

Weight (kDa)

5.7

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	18 - 147	4e-13	ADP-ribosylation factor family
Ras	PF00071	19 - 178	7.2e-62	Ras family
Roc	PF08477	19 - 133	2.7e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39990 AT5G65270
fragaria_vesca	FvH4_1g20380
malus_domestica	MD01G1034200.v1.1 MD15G1321700.v1.1
prunus_persica	Prupe.6G191600_v2.0.a1
pyrus_communis	pycom15g28230
rosa_chinensis	RchiOBHm_Chr2g0112511
rosa_laevigata	RLG00000017987
rosa_multiflora	Rmu_sc0001499.1_g000060
rosa_roxburghii	Rroxscaffold_2G00131360
rosa_rugosa	Rorug02G0181400
rosa_samantha	Rh2AG234600 Rh2BG248200 Rh2CG239200 Rh2DG242200
rosa_wichuraiana	Rw2G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	269
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	78, 80, 219, 269, 446
AclWI	GGATC	2 cut(s)	20, 414
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	2 cut(s)	122, 440
AcyI	GRCGYC	1 cut(s)	304
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	3 cut(s)	84, 268, 635
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	2 cut(s)	55, 538
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	2 cut(s)	628, 634
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	111, 467
AlwI	GGATC	2 cut(s)	20, 414
AlwNI	CAGNNNCTG	2 cut(s)	100, 635
Ama87I	CYCGRG	1 cut(s)	593
Aor51HI	AGCGCT	1 cut(s)	508
AoxI	GGCC	2 cut(s)	141, 223
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	122, 440
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	632
AsuC2I	CCSGG	2 cut(s)	594, 595
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	155, 324
BciT130I	CCWGG	2 cut(s)	630, 636
BciVI	GTATCC	2 cut(s)	11, 208
BcnI	CCSGG	2 cut(s)	594, 595
BcoDI	GTCTC	2 cut(s)	111, 467
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 114
BfoI	RGCGCY	1 cut(s)	510
BfuI	GTATCC	2 cut(s)	11, 208
BglII	AGATCT	3 cut(s)	207, 397, 531
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	4 cut(s)	594, 595, 630, 636
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	632
BmrFI	CCNGG	4 cut(s)	594, 595, 630, 636
BmsI	GCATC	1 cut(s)	421
BpuMI	CCSGG	2 cut(s)	594, 595
Bsa29I	ATCGAT	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	304
BsaJI	CCNNGG	4 cut(s)	78, 262, 516, 593
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 268, 635
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	630, 636
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	4 cut(s)	78, 262, 516, 593
BseLI	CCNNNNNNNGG	3 cut(s)	84, 268, 635
BseMII	CTCAG	2 cut(s)	218, 519
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	27, 279
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	143, 225
BshVI	ATCGAT	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	222, 594
BslI	CCNNNNNNNGG	3 cut(s)	84, 268, 635
BsmAI	GTCTC	2 cut(s)	111, 467
BsmBI	CGTCTC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	143, 225
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
BspACI	CCGC	5 cut(s)	78, 80, 219, 269, 446
BspANI	GGCC	2 cut(s)	143, 225
BspCNI	CTCAG	2 cut(s)	217, 520
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	80
BspPI	GGATC	2 cut(s)	20, 414
BsrBI	CCGCTC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	78, 262, 516, 593
BssMI	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
BssNI	GRCGYC	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	630, 636
Bst4CI	ACNGT	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	223, 603
BstDEI	CTNAG	4 cut(s)	138, 204, 528, 678
BstDSI	CCRYGG	2 cut(s)	78, 516
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	8 cut(s)	28, 69, 187, 210, 400, 409, 534, 577
BstMAI	GTCTC	2 cut(s)	111, 467
BstMBI	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 275, 488
BstNI	CCWGG	2 cut(s)	630, 636
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	4 cut(s)	592, 593, 628, 634
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	4 cut(s)	25, 207, 397, 531
BstYI	RGATCY	4 cut(s)	25, 207, 397, 531
Bsu15I	ATCGAT	1 cut(s)	183
BsuI	GTATCC	2 cut(s)	11, 208
BsuRI	GGCC	2 cut(s)	143, 225
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	2 cut(s)	78, 516
BtgZI	GCGATG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	223, 603
CaiI	CAGNNNCTG	2 cut(s)	100, 635
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	632
Cfr42I	CCGCGG	1 cut(s)	81
Cfr9I	CCCGGG	1 cut(s)	593
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	2 cut(s)	181, 312
CviAII	CATG	2 cut(s)	353, 664
CviJI	RGCY	6 cut(s)	104, 143, 203, 225, 416, 563
CviKI_1	RGCY	6 cut(s)	104, 143, 203, 225, 416, 563
DdeI	CTNAG	4 cut(s)	138, 204, 528, 678
DpnI	GATC	8 cut(s)	27, 68, 186, 209, 399, 408, 533, 576
DpnII	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
EaeI	YGGCCR	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	632
Eco47III	AGCGCT	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	628, 634
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	356, 667
FaiI	YATR	9 cut(s)	48, 111, 256, 291, 296, 321, 354, 419, 665
FatI	CATG	2 cut(s)	352, 663
Fnu4HI	GCNGC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	6, 114
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	143, 225
HapII	CCGG	2 cut(s)	222, 594
HgaI	GACGC	2 cut(s)	181, 312
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	2 cut(s)	356, 667
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	3 cut(s)	74, 134, 166
HpaII	CCGG	2 cut(s)	222, 594
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	4 cut(s)	165, 171, 207, 397
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	254, 356, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 275, 488
HpyF3I	CTNAG	4 cut(s)	138, 204, 528, 678
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	2 cut(s)	356, 667
HspAI	GCGC	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	2 cut(s)	6, 114
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	3 cut(s)	244, 659, 671
MalI	GATC	8 cut(s)	27, 68, 186, 209, 399, 408, 533, 576
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
MboII	GAAGA	7 cut(s)	49, 350, 440, 457, 526, 584, 625
MflI	RGATCY	4 cut(s)	25, 207, 397, 531
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	122, 440
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	5, 8, 257
MroNI	GCCGGC	1 cut(s)	221
MseI	TTAA	2 cut(s)	198, 486
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	2 cut(s)	222, 594
MspR9I	CCNGG	4 cut(s)	594, 595, 630, 636
MvaI	CCWGG	2 cut(s)	630, 636
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	110, 275, 488
NaeI	GCCGGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	594, 595
NdeII	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	356, 667
NspI	RCATGY	1 cut(s)	667
OliI	CACNNNNGTG	1 cut(s)	192
PciI	ACATGT	1 cut(s)	663
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	74, 134
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	632
PscI	ACATGT	1 cut(s)	663
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	628, 634
PspGI	CCWGG	2 cut(s)	628, 634
PspPI	GGNCC	1 cut(s)	632
PspPPI	RGGWCCY	1 cut(s)	632
PstNI	CAGNNNCTG	2 cut(s)	100, 635
PsuI	RGATCY	4 cut(s)	25, 207, 397, 531
RseI	CAYNNNNRTG	1 cut(s)	192
SacII	CCGCGG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	198, 486
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	8 cut(s)	25, 66, 184, 207, 397, 406, 531, 574
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	4 cut(s)	594, 595, 630, 636
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	5 cut(s)	314, 349, 418, 460, 634
SfaNI	GCATC	1 cut(s)	421
Sfr303I	CCGCGG	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	632
SmaI	CCCGGG	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	2 cut(s)	122, 440
SsiI	CCGC	5 cut(s)	78, 80, 219, 269, 446
SspMI	CTAG	2 cut(s)	6, 114
StyD4I	CCNGG	4 cut(s)	592, 593, 628, 634
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	122, 440
TfiI	GAWTC	2 cut(s)	74, 134
Tru1I	TTAA	2 cut(s)	198, 486
Tru9I	TTAA	2 cut(s)	198, 486
TseI	GCWGC	1 cut(s)	563
TspGWI	ACGGA	2 cut(s)	18, 36
TspMI	CCCGGG	1 cut(s)	593
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	2 cut(s)	122, 440
XceI	RCATGY	1 cut(s)	667
XmaI	CCCGGG	1 cut(s)	593
XspI	CTAG	2 cut(s)	6, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.