Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014146

Physical Location & Seq

Genomic Coordinates Reverse (-)

33678436 .. 33680573

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1321700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAGTTATGGGGACGCGAGCCAGAAGATAGACTATGTGTTCAAGGTGGTGCTGATAGGGGACTCTGCGGTGGGCAAGTCTCAGATTCTGGCCAGGTTTGCCCGGAACGAGTTTAGCTTGGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACTCGGACCCTCCTCATCGAGCACAAGAGTGTCAAGGCCCAGATCTGGGACACTGCCGGACAAGAACGATATAGAGCGGTTACAAGTGCGTACTACAGGGGTGCTGTTGGGGCAATGCTGGTATATGATATAACCAAACGCCAGACCTTTGACCATATACCACGCTGGCTGGAAGAACTGCGTAGCCATGCCGACAAGAACATAGTCATCATTCTGATAGGCAACAAAAGTGATCTTGAGAACCAGCGTGCAGTCCCCACTGAAGATGCCAAAGAATTTGCCCAAAAGGAAGGCCTTTTCTTCCTGGAGACCTCAGCACTGGAAGCAACAAATGTGGAGAACGCTTTCTCGACTGTGTTGACAGAGATATTCAACATTGTTAACAAGAAAAGCCTTGCTGCCAACGAAAATCAAGCTAATGGAAACCCTCCATCTTTGACTGGTAAGAAGATCCTTGTCCCAGGCCCTGCACAAGTAATCCCAGCTAAGAGCAAGGTGTGCTGTACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0019899 GO:0019900 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032456 GO:0032588 GO:0035618 GO:0035619 GO:0042546 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071554 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

223

Amino Acids

24.5

Weight (kDa)

8.44

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 144	7e-14	ADP-ribosylation factor family
Ras	PF00071	16 - 176	2.9e-63	Ras family
Roc	PF08477	16 - 130	2.2e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39990 AT5G65270
fragaria_vesca	FvH4_1g20380
malus_domestica	MD01G1034200.v1.1 MD15G1321700.v1.1
prunus_persica	Prupe.6G191600_v2.0.a1
pyrus_communis	pycom15g28230
rosa_chinensis	RchiOBHm_Chr2g0112511
rosa_laevigata	RLG00000017987
rosa_multiflora	Rmu_sc0001499.1_g000060
rosa_roxburghii	Rroxscaffold_2G00131360
rosa_rugosa	Rorug02G0181400
rosa_samantha	Rh2AG234600 Rh2BG248200 Rh2CG239200 Rh2DG242200
rosa_wichuraiana	Rw2G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	71, 233
AclWI	GGATC	1 cut(s)	601
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	248, 661
AfiI	CCNNNNNNNGG	2 cut(s)	201, 202
AgsI	TTSAA	2 cut(s)	46, 529
AjnI	CCWGG	3 cut(s)	95, 459, 616
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	120, 572, 641
AluI	AGCT	3 cut(s)	120, 572, 641
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	87, 458
AlwI	GGATC	1 cut(s)	601
AlwNI	CAGNNNCTG	2 cut(s)	91, 623
AoxI	GGCC	5 cut(s)	93, 132, 192, 448, 619
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	500
AspS9I	GGNCC	3 cut(s)	162, 193, 620
AsuC2I	CCSGG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	146, 595
BciT130I	CCWGG	3 cut(s)	97, 461, 618
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	87, 458
BfmI	CTRYAG	1 cut(s)	250
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	4 cut(s)	97, 106, 461, 618
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	3 cut(s)	162, 193, 620
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	4 cut(s)	97, 106, 461, 618
BmsI	GCATC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	129, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 202
Bse1I	ACTGG	2 cut(s)	480, 601
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	97, 461, 618
BseDI	CCNNGG	2 cut(s)	129, 616
BseLI	CCNNNNNNNGG	2 cut(s)	201, 202
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	98, 483
BseNI	ACTGG	2 cut(s)	480, 601
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	2 cut(s)	426, 609
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	5 cut(s)	95, 134, 194, 450, 621
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	106, 213
BslFI	GGGAC	5 cut(s)	29, 77, 218, 395, 599
BslI	CCNNNNNNNGG	2 cut(s)	201, 202
BsmAI	GTCTC	2 cut(s)	87, 458
BsmFI	GGGAC	5 cut(s)	29, 77, 218, 395, 599
BsnI	GGCC	5 cut(s)	95, 134, 194, 450, 621
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	198, 388, 606
BspACI	CCGC	2 cut(s)	71, 233
BspANI	GGCC	5 cut(s)	95, 134, 194, 450, 621
BspCNI	CTCAG	2 cut(s)	97, 482
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	480, 601
BssECI	CCNNGG	2 cut(s)	129, 616
BssMI	GATC	3 cut(s)	198, 388, 606
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	97, 461, 618
Bst4CI	ACNGT	1 cut(s)	511
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	654
BstAUI	TGTACA	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	22, 323, 405
BstDEI	CTNAG	3 cut(s)	84, 469, 642
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	201, 391, 609
BstMAI	GTCTC	2 cut(s)	87, 458
BstMBI	GATC	3 cut(s)	198, 388, 606
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 266, 479, 654
BstNI	CCWGG	3 cut(s)	97, 461, 618
BstSCI	CCNGG	4 cut(s)	95, 104, 459, 616
BstSFI	CTRYAG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	2 cut(s)	198, 606
BstYI	RGATCY	2 cut(s)	198, 606
BsuRI	GGCC	5 cut(s)	95, 134, 194, 450, 621
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	207, 414, 473
Cac8I	GCNNGC	3 cut(s)	22, 323, 405
CaiI	CAGNNNCTG	2 cut(s)	91, 623
Cfr13I	GGNCC	3 cut(s)	162, 193, 620
CseI	GACGC	2 cut(s)	26, 133
Csp6I	GTAC	2 cut(s)	247, 660
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	247, 660
DdeI	CTNAG	3 cut(s)	84, 469, 642
DpnI	GATC	3 cut(s)	200, 390, 608
DpnII	GATC	3 cut(s)	198, 388, 606
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	95, 459, 616
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	347
FaqI	GGGAC	5 cut(s)	29, 77, 218, 395, 599
FatI	CATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	555
Fsp4HI	GCNGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	5 cut(s)	95, 134, 194, 450, 621
HapII	CCGG	2 cut(s)	106, 213
HgaI	GACGC	2 cut(s)	26, 133
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	516, 538
HindII	GTYRAC	2 cut(s)	516, 538
HinfI	GANTC	4 cut(s)	65, 88, 125, 157
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	106, 213
Hpy166II	GTNNAC	2 cut(s)	516, 538
Hpy188I	TCNGA	3 cut(s)	87, 162, 372
Hpy188III	TCNNGA	4 cut(s)	154, 392, 505, 666
Hpy8I	GTNNAC	2 cut(s)	516, 538
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	2 cut(s)	407, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 266, 479, 654
HpyF3I	CTNAG	3 cut(s)	84, 469, 642
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	347
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	198, 388, 606
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	200, 390, 608
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	3 cut(s)	198, 388, 606
MboII	GAAGA	5 cut(s)	40, 341, 431, 448, 616
MflI	RGATCY	2 cut(s)	198, 606
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	431
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	3 cut(s)	59, 119, 151
MnlI	CCTC	4 cut(s)	176, 179, 478, 594
Mox20I	TGGCCA	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	2 cut(s)	106, 213
MspR9I	CCNGG	4 cut(s)	97, 106, 461, 618
MvaI	CCWGG	3 cut(s)	97, 461, 618
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	101, 266, 479, 654
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	198, 388, 606
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	3 cut(s)	59, 119, 151
PpsI	GAGTC	3 cut(s)	59, 119, 151
Psp6I	CCWGG	3 cut(s)	95, 459, 616
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	3 cut(s)	95, 459, 616
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	162, 193, 620
PstNI	CAGNNNCTG	2 cut(s)	91, 623
PsuI	RGATCY	2 cut(s)	198, 606
RsaI	GTAC	2 cut(s)	248, 661
RsaNI	GTAC	2 cut(s)	247, 660
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	3 cut(s)	198, 388, 606
Sau96I	GGNCC	3 cut(s)	162, 193, 620
SchI	GAGTC	3 cut(s)	59, 119, 151
ScrFI	CCNGG	4 cut(s)	97, 106, 461, 618
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	8 cut(s)	51, 101, 122, 305, 470, 574, 643, 654
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	431
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	2 cut(s)	71, 233
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	4 cut(s)	95, 104, 459, 616
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	147, 174, 506
TasI	AATT	1 cut(s)	431
TatI	WGTACW	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	3 cut(s)	214, 421, 480
TseI	GCWGC	1 cut(s)	554
TspRI	CASTG	3 cut(s)	214, 421, 480
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.