AT5G02280

Sybindin-like family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
469298 .. 470285
988 bp
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UTR
Exon/CDS
Intron
AT5G02280.1

Sequence Viewer

Length: 426 bp
ATGGCAGCGATTTACAGTCTTTACATAATTAACAAATCTGGTGGTTTGATATTCTACAAGGATTGTGGAACAAAGGGAAGAATGGATACGAATGATAGCTTGAGAGTAGCTAGTTTATGGCATTCAATGCACGCCATTTCTCAGCAGCTTTCACCTGTCAATGGCTGTTCTGGCATCGAGCTTCTCGAAGCCGACACTTTCGATCTCCATTGTTTCCAGTCTCTCCCAGGAACAAAGTTCTTTGTGGTTTGTGAACCTGGGACTCCTCACATGGAGAGCCTCCTTAGATACATTTATGAACTCTACACTGATTACGTCTTGAAGAATCCTTTCTATGAGATTGAAATGCCTATCCGTTGCGAGCTTTTCGACATCAACCTTACTCAAGCTGTACAGTCAGATCGTGTTGCTTTGTTAGGACGATGA

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

5.24

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sybindin PF04099 4 - 133 6.2e-54 Sybindin-like family
Sedlin_N PF04628 19 - 132 1.8e-06 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014619)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02280
fragaria_vesca FvH4_6g08030
malus_domestica MD12G1203200.v1.1 MD14G1013000.v1.1
prunus_persica Prupe.6G309100_v2.0.a1
pyrus_communis pycom12g18970 pycom14g01100
rosa_chinensis RchiOBHm_Chr3g0457701
rosa_laevigata RLG00000025193
rosa_multiflora Rmu_sc0007395.1_g000003 Rmu_sc0028418.1_g000003
rosa_roxburghii Rroxscaffold_6G00421560
rosa_rugosa Rorug03G0022700
rosa_samantha Rh3AG083400 Rh3CG086200 Rh3DG086800
rosa_wichuraiana Rw3G007140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 3 cut(s) 126, 322, 344
AjnI CCWGG 2 cut(s) 226, 256
AluBI AGCT 6 cut(s) 99, 110, 148, 181, 364, 389
AluI AGCT 6 cut(s) 99, 110, 148, 181, 364, 389
Alw26I GTCTC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 5, 145
Asp700I GAANNNNTTC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
BbvI GCAGC 2 cut(s) 17, 157
BciT130I CCWGG 2 cut(s) 228, 258
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 111
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 2 cut(s) 6, 146
BlsI GCNGC 2 cut(s) 7, 147
Bme1390I CCNGG 2 cut(s) 228, 258
BmrFI CCNGG 2 cut(s) 228, 258
BmsI GCATC 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 121, 369
BsaJI CCNNGG 2 cut(s) 226, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 228, 258
BseDI CCNNGG 2 cut(s) 226, 257
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 17, 157
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 202, 400
BspCNI CTCAG 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 226, 257
BssMI GATC 2 cut(s) 202, 400
Bst2UI CCWGG 2 cut(s) 228, 258
Bst4CI ACNGT 2 cut(s) 17, 396
BstAPI GCANNNNNTGC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 132, 362
BstDEI CTNAG 2 cut(s) 141, 284
BstKTI GATC 2 cut(s) 205, 403
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 202, 400
BstMWI GCNNNNNNNGC 2 cut(s) 127, 171
BstNI CCWGG 2 cut(s) 228, 258
BstSCI CCNGG 2 cut(s) 226, 256
BstV1I GCAGC 2 cut(s) 17, 157
BsuI GTATCC 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 132, 362
Csp6I GTAC 1 cut(s) 392
CspCI CAANNNNNGTGG 4 cut(s) 22, 46, 57, 81
CviAII CATG 1 cut(s) 271
CviJI RGCY 9 cut(s) 99, 110, 148, 165, 181, 191, 279, 364, 389
CviKI_1 RGCY 9 cut(s) 99, 110, 148, 165, 181, 191, 279, 364, 389
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 2 cut(s) 141, 284
DpnI GATC 2 cut(s) 204, 402
DpnII GATC 2 cut(s) 202, 400
EcoRII CCWGG 2 cut(s) 226, 256
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 26, 118, 272, 297, 336
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 6, 146
Fsp4HI GCNGC 2 cut(s) 6, 146
FspBI CTAG 1 cut(s) 111
GluI GCNGC 2 cut(s) 6, 146
Hin1II CATG 1 cut(s) 274
HinfI GANTC 2 cut(s) 262, 325
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 185, 319
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4III ACNGT 2 cut(s) 17, 396
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 171
HpyF3I CTNAG 2 cut(s) 141, 284
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 2 cut(s) 202, 400
LpnPI CCDG 8 cut(s) 24, 156, 168, 213, 230, 240, 243, 270
Lsp1109I GCAGC 2 cut(s) 17, 157
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 315
MalI GATC 2 cut(s) 204, 402
MboI GATC 2 cut(s) 202, 400
MboII GAAGA 2 cut(s) 90, 334
MluCI AATT 1 cut(s) 27
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 2 cut(s) 276, 290
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 228, 258
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 2 cut(s) 228, 258
MwoI GCNNNNNNNGC 2 cut(s) 127, 171
NdeII GATC 2 cut(s) 202, 400
NlaIII CATG 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 7, 147
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Psp6I CCWGG 2 cut(s) 226, 256
PspGI CCWGG 2 cut(s) 226, 256
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 2 cut(s) 6, 146
Sau3AI GATC 2 cut(s) 202, 400
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 228, 258
SfaNI GCATC 1 cut(s) 183
SmlI CTYRAG 2 cut(s) 100, 384
SmoI CTYRAG 2 cut(s) 100, 384
Sse9I AATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 226, 256
TaaI ACNGT 2 cut(s) 17, 396
TaiI ACGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 177, 186, 201, 369
TasI AATT 1 cut(s) 27
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 313
TseI GCWGC 2 cut(s) 5, 145
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.