Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014619

Physical Location & Seq

Genomic Coordinates Forward (+)

28323038 .. 28325298

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1203200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAGCAATTTACAGTCTCTACATCATCAACAAATCAGGCGGCTTGATCTACTACAAGGATTACGGGTCGGCGGGAAGGATGGACACTAACGATACCTTGAGGGTTGCGAGCTTGTGGCACTCGATGCACGCCATTTCTCAGCAGCTGTCGCCGGTATCGGGCTGTTTCGGAATCGAACTCCTCCAAGCTGACACTTTCGATCTTAATTGCTTCCAATCACTCACTGGGACAAAATTCTTTGTTGTCTCTGAGCCTGGGACACAGCACATGGAAGGTCTCTTGAAACATATCTATGAGCTGTACACGGATTATGTCTTGAAGAATCCCTTCTACGAGATGGAGATGCCTATACGATGCGAGCTCTTTGATACCAACTTAACACAGGCAGTACAGAAGGATCGTGTTGCATTGTTGGCCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

142

Amino Acids

16.04

Weight (kDa)

5.45

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	4 - 133	2.1e-51	Sybindin-like family
Sedlin_N	PF04628	10 - 133	7.4e-09	Sedlin, N-terminal conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02280
fragaria_vesca	FvH4_6g08030
malus_domestica	MD12G1203200.v1.1 MD14G1013000.v1.1
prunus_persica	Prupe.6G309100_v2.0.a1
pyrus_communis	pycom12g18970 pycom14g01100
rosa_chinensis	RchiOBHm_Chr3g0457701
rosa_laevigata	RLG00000025193
rosa_multiflora	Rmu_sc0007395.1_g000003 Rmu_sc0028418.1_g000003
rosa_roxburghii	Rroxscaffold_6G00421560
rosa_rugosa	Rorug03G0022700
rosa_samantha	Rh3AG083400 Rh3CG086200 Rh3DG086800
rosa_wichuraiana	Rw3G007140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 74
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	2 cut(s)	305, 393
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	286, 322
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	5 cut(s)	114, 148, 191, 301, 364
AluI	AGCT	5 cut(s)	114, 148, 191, 301, 364
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	23, 253, 284
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	5, 145
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	17, 157
BccI	CCATC	2 cut(s)	76, 334
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	23, 253, 284
BisI	GCNGC	3 cut(s)	6, 43, 146
BlsI	GCNGC	3 cut(s)	7, 44, 147
Bme1390I	CCNGG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	117, 336, 347
BmuI	ACTGGG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	155, 243
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	17, 157
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	244, 274
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	23, 253, 284
BsmFI	GGGAC	2 cut(s)	244, 274
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	48, 202, 400
BspACI	CCGC	2 cut(s)	42, 74
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	154, 244
BspPI	GGATC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	48, 202, 400
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	112, 132, 362
BstDEI	CTNAG	2 cut(s)	141, 252
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	51, 205, 403
BstMAI	GTCTC	3 cut(s)	23, 253, 284
BstMBI	GATC	3 cut(s)	48, 202, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 151, 416
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	17, 157
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	112, 132, 362
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	304, 392
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	9 cut(s)	45, 114, 148, 165, 191, 256, 301, 364, 419
CviKI_1	RGCY	9 cut(s)	45, 114, 148, 165, 191, 256, 301, 364, 419
CviQI	GTAC	2 cut(s)	304, 392
DdeI	CTNAG	2 cut(s)	141, 252
DpnI	GATC	3 cut(s)	50, 204, 402
DpnII	GATC	3 cut(s)	48, 202, 400
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	1 cut(s)	274
FaiI	YATR	5 cut(s)	272, 291, 297, 315, 353
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	244, 274
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	6, 43, 146
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	6, 43, 146
GluI	GCNGC	3 cut(s)	6, 43, 146
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	274
HinfI	GANTC	2 cut(s)	174, 325
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	2 cut(s)	173, 253
Hpy188III	TCNNGA	2 cut(s)	283, 319
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	4 cut(s)	72, 269, 340, 391
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	130, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 151, 416
HpyF3I	CTNAG	2 cut(s)	141, 252
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	48, 202, 400
LpnPI	CCDG	6 cut(s)	24, 168, 213, 243, 270, 371
Lsp1109I	GCAGC	2 cut(s)	17, 157
LweI	GCATC	3 cut(s)	117, 336, 347
MalI	GATC	3 cut(s)	50, 204, 402
MboI	GATC	3 cut(s)	48, 202, 400
MboII	GAAGA	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	9, 208, 236
MnlI	CCTC	2 cut(s)	96, 194
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	2 cut(s)	207, 380
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	127, 151, 416
NdeII	GATC	3 cut(s)	48, 202, 400
NlaIII	CATG	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	174, 325
PkrI	GCNGC	3 cut(s)	7, 44, 147
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	305, 393
RsaNI	GTAC	2 cut(s)	304, 392
RseI	CAYNNNNRTG	1 cut(s)	294
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	207, 380
SatI	GCNGC	3 cut(s)	6, 43, 146
Sau3AI	GATC	3 cut(s)	48, 202, 400
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	7 cut(s)	101, 116, 150, 193, 280, 303, 366
SfaNI	GCATC	3 cut(s)	117, 336, 347
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	3 cut(s)	9, 208, 236
SsiI	CCGC	2 cut(s)	42, 74
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	125, 177, 201
TasI	AATT	3 cut(s)	9, 208, 236
TatI	WGTACW	2 cut(s)	303, 391
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	174, 325
Tru1I	TTAA	2 cut(s)	207, 380
Tru9I	TTAA	2 cut(s)	207, 380
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	2 cut(s)	5, 145
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.