Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

1812465 .. 1820261

Gene Structure 7797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3171 bp

ATGGTGAATAGTAGTTACTTGGCTGCAATGTTGAGAGCAGTAGCTCTTGGGTTGTTAGTTTCCTGTTTGGCTGTATCTGTTTCAGCCAGTGATAATGATTTTGTGAATTGTAATTGTGATGATGAGGGTTCTTGGAGCATTCAGAGCATTTTAGAGTGTCAAAGAGTGAGTGATTTCTTGATTGCAATAGCGTATTTTTCGATCCCTATAGAGCTCCTTTATTTTGTCAGCTGCTCAAACTTTCCATTCAAATGGGTCCTCCTTCAGTTCATCGCGTTTATAGTCCTTTGTGGATTGACCCATTTGCTCAATGCTTGGACTTATTATGGCCCTCATAGTGCTCACTCTTTCCAATTAATGCTTGCCCTCACCATTTCCAAATTCCTCACGGCCTTGGTCTCGTGTGCAACTGCAATAACCCTTTTAACTCTTTTCCCTCTTATTCTGAAAGTCAAAGTAAGAGAGTTGTTCTTGAGGCAGAATGTGTTGGAATTAGACCAAGAGGTTGGGATGATGAAGATAAAGAAGGAAGCGAGTTGGCATGTCCGTATGCTGACCCAGGAAATTAGAAAGTCACTTGATAAGCATAACATATTGTATACAACTCTCGTTGAGCTTTCAAAGACATTGGACTTGCATAACTGTGCAGTTTGGATGCCGAATGAGAACAGGACAGAGATGAACCTGACTCATGAGTTGAAAGGGAGTTCTTCGAGAAATTATAGTCGTACTATCCCAATTAATGATCCAAATGTGTTGGAGATAAGAGAAAGCAAGAGGGTAAGAATCCTGAGGCCTGATTCCGCACTTGGAACTGCAAGTAGTGGTGAGTCTAGCGAATGTGGTGCTGTAGCAGCAATTCGGATGCCAATGCTTAGAGTTTCGAATTTTAAAGGGGGTACACCACAGTTAGTTGATACTCCTTATGCTATATTGGTGTTGGTTCTTCCAATGTCAGAATCTAGAGTTTGGAGCTATCATGAAATGGAGATAGTGGAAGTCGTGGCTGACCAGGTTGCGGTGGCTCTATCCCACGCTGCAGTGCTTGAAGAGTCTCAACTAATGAGAGAGAAACTGAGAGAACAAAATCGTGCACTACAACAGGCTCAGAAGAATGCAATGATGGCCAGCCAAGCAAGGTACTCATTTCAGAAGGTAATGAGTAATGGAATGAGAAGGCCGATGCATTCCATTTTGGGTTTGCTGTCAACATTTGAGAATATGAGTTTGAAACAAAGGATTATTGTAGACACGATGGTAAAAACTAGCTATGTTCTCTCCACTTTGATAACTGATGTCATGGAGATGTCAGCTAAAGATAATGGAAGGTTCCCACTAGAGATGAGGCCTTTTCAGCTTCACTCTATGATCAAAGAAGCTTCTTGCCTTGCCAAGTGCTTGTGTGTGTACAAAGGCTTTAGGTTTGAAGTTGATGTTCAGAGCTCATTGCCTAATCAGGTGATGGGGGATGAAAGAAGGGCTTTCCAAGTAATCTTGCATATGGTTGGATCACTTCTGAGCACCTATAATGGAGAGGGAACTGTCATCTTTCGGGCTGTTCTAGAGAGTGGTTCCGAGAGCCAGGATGATAAATTGCAACAAATGTGGAGAACAGGTACGCCAGATAAGTATGTATCTGTGAGGTTCGAATTTGAGATTAGTGACGGAACCTCTCATTCCAGTGGAGTATTATCGATGATTGATTATGATGGTAGGAGGAACAACAGCAATGAAATTAAGAAGGGCCTGAGCTTCAGCATTTGCAAAAAGATTGTCCAGATGATGCAAGGAAATATCTGGATGTCCATGAATCCAATCAATCTTGCAGAAAGCATGAACCTTGTTCTCAGGTTTCAAGTCCTTCATTCTGTTGGGAGAGCTATGTATGTCGCTGGAAATCTCTTGGAGCAACCAAATTCCAACTCAGAGTTCAGAGGACTCCGGGTTGTAGTAGTGGATGATGATAATGTAAATAGGACTGTGACCGCTAAACTGCTCCAGAAACTTGGCTGTCAAGTCAGTACTGTTTCTTCGGGGTTTGAATGCCTGAGTACCCTTGGCAGTGCAGAAAATCCATTCCAGGTTGTTGTTTTGGATCTTCACATGCCTGAAATGGATGGGTTTGAAGTGGCAATGCGAATCAGGAAATTCCACAACCCTAACTGGCCACTGATCATAGCCCTGACAGCAAGTGCGGAGGAATCTGTGTGGGAGAAATGTCTACAGATGGGAATGAACGGACTGATCCGAAAACCTGTTATTTTGAAAGGGATGTCGGATGAGCTTCGGAGAGTACTGCAACGAGCCGGTGAAGGTCATTTATACCCTTCTCCCGTTTCTGCTCTTAAACCTCAATTTGTTAAAGAATGTGAGGGGAGAGAAAGCGACGCCGTTTCGCGCCAAACCCTAACCTCTACCGGCGCAAAAGCGCGGGCTCTGTGTTCTCAAATCGGTGAAGACGAGAAGATGAAGAAAGCAGAGTACTTCAGCAAGGACTTCGAGTGGGACGAGCTGAGAGTCGAGGTAGAAAACGACCCGTCGTTTAGCTACCATTTGCTCCCATTCCAGCCCTCTCTTTCAGTTGCAGAAGAAGCTGAATCTCAACCGTGGAATGACTTTCATCACCGCCATTCATCTGGGAAGTTCTTCAAGGAAAGGCGATATTTGTTGCAAGAATTCCCTCAACTAGTTAGCTGTGAGGAGAATTCTAGGGTTTTGGAGGTGGGGTGTGGCAATGGCAGCACTGTTCTTCCAATATTGAGGGGCAACGAGAAAGTCACGGTTTATGCATGTGATTGTAGCACTGAGGCCCTTGAGAAGGCTAAGGAGATGATTTATGCTTCTAACATTGTTTCTATTGAGCATCGTTTCCATACGTTTTGTTGTGATTTCTCTACCTCTGGGTTTCCAACATGGTTGACCTACAATCCTTGTCAAGCAAATTTTGAACAAACTTCAGATGGTAGAGGGAATAGTGAAACCTGTCTTGATGATTCAAGTTCATTGAAAGAAAGCAGATGTTGCATTGGTGGGGTTGATTTTGTTACCTTGGTAAGCATCCATTACATTAAACTGGGATATTTTAGATTAACCTTTGATAATATAGAACCTAAAAGAACAACATGCTATCTGATATCAGTCTCCTTGTCCTTTGAAACTTGTAGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

1056

Amino Acids

118.94

Weight (kDa)

6.17

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	50 - 151	2.6e-40	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	196 - 343	8.9e-10	GAF domain
Response_reg	PF00072	649 - 755	6.4e-22	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	599, 1248, 2221
AccII	CGCG	3 cut(s)	275, 2398, 2431
AciI	CCGC	6 cut(s)	804, 1019, 1986, 2195, 2431, 2626
AclWI	GGATC	5 cut(s)	196, 740, 1516, 2103, 2239
AcoI	YGGCCR	2 cut(s)	1125, 2165
AcsI	RAATTY	8 cut(s)	380, 886, 1649, 1915, 2147, 2675, 2704, 2941
AcuI	CTGAAG	4 cut(s)	248, 1738, 2470, 2940
AcyI	GRCGYC	1 cut(s)	2388
AfaI	GTAC	9 cut(s)	730, 901, 1142, 1409, 1618, 2023, 2053, 2295, 2483
AfiI	CCNNNNNNNGG	2 cut(s)	1018, 2818
AhlI	ACTAGT	1 cut(s)	2686
AjnI	CCWGG	4 cut(s)	558, 1011, 1581, 2079
AjuI	GAANNNNNNNTTGG	2 cut(s)	1913, 1945
Alw21I	GWGCWC	5 cut(s)	216, 343, 1096, 1445, 1523
Alw26I	GTCTC	3 cut(s)	403, 1059, 3145
Alw44I	GTGCAC	1 cut(s)	1092
AlwI	GGATC	5 cut(s)	196, 740, 1516, 2103, 2239
AoxI	GGCC	9 cut(s)	328, 390, 794, 1125, 1178, 1346, 1744, 2165, 2808
ApaLI	GTGCAC	1 cut(s)	1092
ApeKI	GCWGC	5 cut(s)	23, 231, 854, 1037, 2739
ApoI	RAATTY	8 cut(s)	380, 886, 1649, 1915, 2147, 2675, 2704, 2941
ArsI	GACNNNNNNTTYG	2 cut(s)	1758, 1790
AseI	ATTAAT	2 cut(s)	356, 741
Asp700I	GAANNNNTTC	1 cut(s)	2645
AspLEI	GCGC	3 cut(s)	2400, 2423, 2431
AspS9I	GGNCC	4 cut(s)	256, 329, 1744, 2809
AsuC2I	CCSGG	1 cut(s)	1943
AsuHPI	GGTGA	7 cut(s)	16, 361, 839, 1471, 2321, 2465, 2615
AsuII	TTCGAA	2 cut(s)	884, 1647
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	791
BaeGI	GKGCMC	1 cut(s)	1096
BalI	TGGCCA	2 cut(s)	1127, 2167
BanII	GRGCYC	3 cut(s)	216, 1445, 2437
BarI	GAAGNNNNNNTAC	2 cut(s)	2014, 2046
BauI	CACGAG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	2463
Bbv12I	GWGCWC	5 cut(s)	216, 343, 1096, 1445, 1523
BbvI	GCAGC	5 cut(s)	10, 218, 866, 1024, 2751
BccI	CCATC	7 cut(s)	1117, 1249, 1456, 1703, 2111, 2221, 2954
BceAI	ACGGC	2 cut(s)	405, 2375
BcgI	CGANNNNNNTGC	4 cut(s)	827, 861, 2479, 2513
BciT130I	CCWGG	4 cut(s)	560, 1013, 1583, 2081
BclI	TGATCA	2 cut(s)	1368, 2172
BcnI	CCSGG	1 cut(s)	1943
BcoDI	GTCTC	3 cut(s)	403, 1059, 3145
BcuI	ACTAGT	1 cut(s)	2686
BfaI	CTAG	7 cut(s)	834, 963, 1266, 1337, 1562, 2687, 2709
BfmI	CTRYAG	4 cut(s)	207, 849, 1038, 2222
BisI	GCNGC	5 cut(s)	24, 232, 855, 1038, 2740
BlsI	GCNGC	5 cut(s)	25, 233, 856, 1039, 2741
BmcAI	AGTACT	3 cut(s)	2023, 2295, 2483
Bme1390I	CCNGG	5 cut(s)	560, 1013, 1583, 1943, 2081
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	4 cut(s)	256, 329, 1744, 2809
BmiI	GGNNCC	4 cut(s)	257, 1331, 1573, 1669
BmrFI	CCNGG	5 cut(s)	560, 1013, 1583, 1943, 2081
BmrI	ACTGGG	1 cut(s)	3083
BmsI	GCATC	6 cut(s)	645, 855, 1173, 1773, 2872, 3066
BmuI	ACTGGG	1 cut(s)	3083
BpiI	GAAGAC	1 cut(s)	2463
BpmI	CTGGAG	1 cut(s)	1982
Bpu10I	CCTNAGC	2 cut(s)	1748, 2823
Bpu14I	TTCGAA	2 cut(s)	884, 1647
BpuEI	CTTGAG	2 cut(s)	493, 2834
BpuMI	CCSGG	1 cut(s)	1943
Bsa29I	ATCGAT	1 cut(s)	1694
BsaHI	GRCGYC	1 cut(s)	2388
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	5 cut(s)	393, 558, 2056, 2606, 3048
BsaXI	ACNNNNNCTCC	4 cut(s)	1600, 1630, 2711, 2741
Bsc4I	CCNNNNNNNGG	2 cut(s)	1018, 2818
Bse118I	RCCGGY	2 cut(s)	2306, 2417
Bse1I	ACTGG	4 cut(s)	87, 1680, 2168, 3078
Bse21I	CCTNAGG	1 cut(s)	791
Bse3DI	GCAATG	6 cut(s)	33, 1125, 1445, 1735, 2139, 2740
BseBI	CCWGG	4 cut(s)	560, 1013, 1583, 2081
BseCI	ATCGAT	1 cut(s)	1694
BseDI	CCNNGG	5 cut(s)	393, 558, 2056, 2606, 3048
BseLI	CCNNNNNNNGG	2 cut(s)	1018, 2818
BseMI	GCAATG	6 cut(s)	33, 1125, 1445, 1735, 2139, 2740
BseNI	ACTGG	4 cut(s)	87, 1680, 2168, 3078
BseRI	GAGGAG	1 cut(s)	2714
BseSI	GKGCMC	1 cut(s)	1096
BseXI	GCAGC	5 cut(s)	10, 218, 866, 1024, 2751
BsgI	GTGCAG	2 cut(s)	666, 2085
Bsh1236I	CGCG	3 cut(s)	275, 2398, 2431
BshFI	GGCC	9 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167, 2810
BshVI	ATCGAT	1 cut(s)	1694
BsiHKAI	GWGCWC	5 cut(s)	216, 343, 1096, 1445, 1523
BsiSI	CCGG	3 cut(s)	1942, 2307, 2418
BslFI	GGGAC	1 cut(s)	2519
BslI	CCNNNNNNNGG	2 cut(s)	1018, 2818
BsmAI	GTCTC	3 cut(s)	403, 1059, 3145
BsmFI	GGGAC	1 cut(s)	2519
BsmI	GAATGC	4 cut(s)	138, 1120, 1186, 2048
BsnI	GGCC	9 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167, 2810
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	2 cut(s)	884, 1647
Bsp1286I	GDGCHC	6 cut(s)	216, 343, 1096, 1445, 1523, 2437
Bsp1407I	TGTACA	1 cut(s)	1407
Bsp143I	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
BspACI	CCGC	6 cut(s)	804, 1019, 1986, 2195, 2431, 2626
BspANI	GGCC	9 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167, 2810
BspDI	ATCGAT	1 cut(s)	1694
BspFNI	CGCG	3 cut(s)	275, 2398, 2431
BspHI	TCATGA	2 cut(s)	691, 979
BspLI	GGNNCC	4 cut(s)	257, 1331, 1573, 1669
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	5 cut(s)	196, 740, 1516, 2103, 2239
BspT104I	TTCGAA	2 cut(s)	884, 1647
BspTNI	GGTCTC	1 cut(s)	403
BsrDI	GCAATG	6 cut(s)	33, 1125, 1445, 1735, 2139, 2740
BsrFI	RCCGGY	2 cut(s)	2306, 2417
BsrGI	TGTACA	1 cut(s)	1407
BsrI	ACTGG	4 cut(s)	87, 1680, 2168, 3078
BssAI	RCCGGY	2 cut(s)	2306, 2417
BssECI	CCNNGG	5 cut(s)	393, 558, 2056, 2606, 3048
BssMI	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
BssNAI	GTATAC	1 cut(s)	600
BssNI	GRCGYC	1 cut(s)	2388
BssSI	CACGAG	1 cut(s)	400
BssT1I	CCWWGG	3 cut(s)	393, 2056, 3048
Bst1107I	GTATAC	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	400
Bst2UI	CCWGG	4 cut(s)	560, 1013, 1583, 2081
Bst4CI	ACNGT	8 cut(s)	644, 909, 1543, 1981, 2026, 2607, 2746, 2782
Bst6I	CTCTTC	1 cut(s)	1044
BstACI	GRCGYC	1 cut(s)	2388
BstAPI	GCANNNNNTGC	1 cut(s)	3021
BstAUI	TGTACA	1 cut(s)	1407
BstBI	TTCGAA	2 cut(s)	884, 1647
BstC8I	GCNNGC	3 cut(s)	363, 1129, 2433
BstDSI	CCRYGG	1 cut(s)	2606
BstENI	CCTNNNNNAGG	1 cut(s)	2816
BstFNI	CGCG	3 cut(s)	275, 2398, 2431
BstHHI	GCGC	3 cut(s)	2400, 2423, 2431
BstKTI	GATC	7 cut(s)	204, 748, 1371, 1511, 2098, 2175, 2247
BstMAI	GTCTC	3 cut(s)	403, 1059, 3145
BstMBI	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
BstMWI	GCNNNNNNNGC	9 cut(s)	144, 854, 1124, 1133, 1354, 2186, 2591, 2739, 3021
BstNI	CCWGG	4 cut(s)	560, 1013, 1583, 2081
BstNSI	RCATGY	4 cut(s)	545, 2107, 2793, 3126
BstSCI	CCNGG	5 cut(s)	558, 1011, 1581, 1941, 2079
BstSFI	CTRYAG	4 cut(s)	207, 849, 1038, 2222
BstSLI	GKGCMC	1 cut(s)	1096
BstUI	CGCG	3 cut(s)	275, 2398, 2431
BstV1I	GCAGC	5 cut(s)	10, 218, 866, 1024, 2751
BstV2I	GAAGAC	1 cut(s)	2463
BstX2I	RGATCY	1 cut(s)	2095
BstXI	CCANNNNNNTGG	4 cut(s)	252, 506, 2006, 2636
BstYI	RGATCY	1 cut(s)	2095
BstZ17I	GTATAC	1 cut(s)	600
Bsu15I	ATCGAT	1 cut(s)	1694
Bsu36I	CCTNAGG	1 cut(s)	791
BsuRI	GGCC	9 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167, 2810
BsuTUI	ATCGAT	1 cut(s)	1694
BtgI	CCRYGG	1 cut(s)	2606
BtgZI	GCGATG	1 cut(s)	256
BtsI	GCAGTG	2 cut(s)	1047, 2068
BtsIMutI	CAGTG	7 cut(s)	94, 1047, 1687, 2068, 2168, 2742, 2802
Cac8I	GCNNGC	3 cut(s)	363, 1129, 2433
CciI	TCATGA	2 cut(s)	691, 979
CfoI	GCGC	3 cut(s)	2400, 2423, 2431
Cfr10I	RCCGGY	2 cut(s)	2306, 2417
Cfr13I	GGNCC	4 cut(s)	256, 329, 1744, 2809
ClaI	ATCGAT	1 cut(s)	1694
CseI	GACGC	1 cut(s)	2396
CsiI	ACCWGGT	1 cut(s)	1011
Csp6I	GTAC	9 cut(s)	729, 900, 1141, 1408, 1617, 2022, 2052, 2294, 2482
CspCI	CAANNNNNGTGG	2 cut(s)	1586, 1621
CviQI	GTAC	9 cut(s)	729, 900, 1141, 1408, 1617, 2022, 2052, 2294, 2482
DpnI	GATC	7 cut(s)	203, 747, 1370, 1510, 2097, 2174, 2246
DpnII	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	2 cut(s)	1125, 2165
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Ecl136II	GAGCTC	2 cut(s)	214, 1443
Eco130I	CCWWGG	3 cut(s)	393, 2056, 3048
Eco147I	AGGCCT	2 cut(s)	796, 1348
Eco24I	GRGCYC	3 cut(s)	216, 1445, 2437
Eco31I	GGTCTC	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	3135
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	2 cut(s)	214, 1443
Eco57I	CTGAAG	4 cut(s)	248, 1738, 2470, 2940
Eco81I	CCTNAGG	1 cut(s)	791
EcoICRI	GAGCTC	2 cut(s)	214, 1443
EcoNI	CCTNNNNNAGG	1 cut(s)	2816
EcoO109I	RGGNCCY	3 cut(s)	256, 1744, 2809
EcoRI	GAATTC	2 cut(s)	2675, 2704
EcoRII	CCWGG	4 cut(s)	558, 1011, 1581, 2079
EcoRV	GATATC	1 cut(s)	3135
EcoT14I	CCWWGG	3 cut(s)	393, 2056, 3048
EcoT22I	ATGCAT	2 cut(s)	1188, 2791
EcoT38I	GRGCYC	3 cut(s)	216, 1445, 2437
ErhI	CCWWGG	3 cut(s)	393, 2056, 3048
FalI	AAGNNNNNCTT	2 cut(s)	1465, 1497
FaqI	GGGAC	1 cut(s)	2519
FauI	CCCGC	1 cut(s)	2424
FauNDI	CATATG	1 cut(s)	1500
FbaI	TGATCA	2 cut(s)	1368, 2172
FblI	GTMKAC	3 cut(s)	599, 1248, 2221
Fnu4HI	GCNGC	5 cut(s)	24, 232, 855, 1038, 2740
FriOI	GRGCYC	3 cut(s)	216, 1445, 2437
Fsp4HI	GCNGC	5 cut(s)	24, 232, 855, 1038, 2740
FspBI	CTAG	7 cut(s)	834, 963, 1266, 1337, 1562, 2687, 2709
GlaI	GCGC	3 cut(s)	2399, 2422, 2430
GluI	GCNGC	5 cut(s)	24, 232, 855, 1038, 2740
GsuI	CTGGAG	1 cut(s)	1982
HaeIII	GGCC	9 cut(s)	330, 392, 796, 1127, 1180, 1348, 1746, 2167, 2810
HapII	CCGG	3 cut(s)	1942, 2307, 2418
HgaI	GACGC	1 cut(s)	2396
HhaI	GCGC	3 cut(s)	2400, 2423, 2431
Hin1I	GRCGYC	1 cut(s)	2388
Hin6I	GCGC	3 cut(s)	2398, 2421, 2429
HinP1I	GCGC	3 cut(s)	2398, 2421, 2429
HincII	GTYRAC	2 cut(s)	1209, 2919
HindII	GTYRAC	2 cut(s)	1209, 2919
HindIII	AAGCTT	1 cut(s)	1377
HpaII	CCGG	3 cut(s)	1942, 2307, 2418
HphI	GGTGA	7 cut(s)	16, 361, 839, 1471, 2321, 2465, 2615
Hpy166II	GTNNAC	8 cut(s)	600, 902, 1094, 1209, 1249, 1408, 2222, 2919
Hpy8I	GTNNAC	8 cut(s)	600, 902, 1094, 1209, 1249, 1408, 2222, 2919
Hpy99I	CGWCG	2 cut(s)	2390, 2542
HpyCH4III	ACNGT	8 cut(s)	644, 909, 1543, 1981, 2026, 2607, 2746, 2782
HpyCH4IV	ACGT	1 cut(s)	2876
HpyF10VI	GCNNNNNNNGC	9 cut(s)	144, 854, 1124, 1133, 1354, 2186, 2591, 2739, 3021
HpySE526I	ACGT	1 cut(s)	2876
Hsp92I	GRCGYC	1 cut(s)	2388
HspAI	GCGC	3 cut(s)	2398, 2421, 2429
Ksp22I	TGATCA	2 cut(s)	1368, 2172
Kzo9I	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
LmnI	GCTCC	6 cut(s)	135, 219, 972, 1906, 2001, 2562
Lsp1109I	GCAGC	5 cut(s)	10, 218, 866, 1024, 2751
LweI	GCATC	6 cut(s)	645, 855, 1173, 1773, 2872, 3066
MabI	ACCWGGT	1 cut(s)	1011
MaeI	CTAG	7 cut(s)	834, 963, 1266, 1337, 1562, 2687, 2709
MaeII	ACGT	1 cut(s)	2876
MaeIII	GTNAC	6 cut(s)	14, 573, 1661, 1981, 2776, 3043
MalI	GATC	7 cut(s)	203, 747, 1370, 1510, 2097, 2174, 2246
MboI	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
MflI	RGATCY	1 cut(s)	2095
MhlI	GDGCHC	6 cut(s)	216, 343, 1096, 1445, 1523, 2437
MlsI	TGGCCA	2 cut(s)	1127, 2167
MluNI	TGGCCA	2 cut(s)	1127, 2167
MlyI	GAGTC	5 cut(s)	682, 839, 1061, 1932, 2526
MmeI	TCCRAC	6 cut(s)	468, 738, 1486, 1944, 2256, 2933
Mox20I	TGGCCA	2 cut(s)	1127, 2167
Mph1103I	ATGCAT	2 cut(s)	1188, 2791
MroXI	GAANNNNTTC	1 cut(s)	2645
MscI	TGGCCA	2 cut(s)	1127, 2167
MseI	TTAA	9 cut(s)	356, 425, 741, 891, 1737, 2346, 2361, 3069, 3089
MslI	CAYNNNNRTG	4 cut(s)	250, 642, 1304, 1680
Msp20I	TGGCCA	2 cut(s)	1127, 2167
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	3 cut(s)	1942, 2307, 2418
MspR9I	CCNGG	5 cut(s)	560, 1013, 1583, 1943, 2081
Mva1269I	GAATGC	4 cut(s)	138, 1120, 1186, 2048
MvaI	CCWGG	4 cut(s)	560, 1013, 1583, 2081
MvnI	CGCG	3 cut(s)	275, 2398, 2431
MwoI	GCNNNNNNNGC	9 cut(s)	144, 854, 1124, 1133, 1354, 2186, 2591, 2739, 3021
NciI	CCSGG	1 cut(s)	1943
NdeI	CATATG	1 cut(s)	1500
NdeII	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
NlaIV	GGNNCC	4 cut(s)	257, 1331, 1573, 1669
NmuCI	GTSAC	4 cut(s)	573, 1661, 1981, 2776
NsiI	ATGCAT	2 cut(s)	1188, 2791
NspI	RCATGY	4 cut(s)	545, 2107, 2793, 3126
NspV	TTCGAA	2 cut(s)	884, 1647
PagI	TCATGA	2 cut(s)	691, 979
PceI	AGGCCT	2 cut(s)	796, 1348
PcsI	WCGNNNNNNNCGW	2 cut(s)	2457, 2505
PctI	GAATGC	4 cut(s)	138, 1120, 1186, 2048
PdmI	GAANNNNTTC	1 cut(s)	2645
PfeI	GAWTC	8 cut(s)	786, 800, 959, 1810, 2139, 2201, 2597, 2993
PkrI	GCNGC	5 cut(s)	25, 233, 856, 1039, 2741
PleI	GAGTC	5 cut(s)	682, 838, 1060, 1932, 2525
PpsI	GAGTC	5 cut(s)	682, 838, 1060, 1932, 2525
PpuMI	RGGWCCY	1 cut(s)	256
PshBI	ATTAAT	2 cut(s)	356, 741
Psp124BI	GAGCTC	2 cut(s)	216, 1445
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	4 cut(s)	558, 1011, 1581, 2079
PspGI	CCWGG	4 cut(s)	558, 1011, 1581, 2079
PspN4I	GGNNCC	4 cut(s)	257, 1331, 1573, 1669
PspPI	GGNCC	4 cut(s)	256, 329, 1744, 2809
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	1042
PsuI	RGATCY	1 cut(s)	2095
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	9 cut(s)	730, 901, 1142, 1409, 1618, 2023, 2053, 2295, 2483
RsaNI	GTAC	9 cut(s)	729, 900, 1141, 1408, 1617, 2022, 2052, 2294, 2482
RseI	CAYNNNNRTG	4 cut(s)	250, 642, 1304, 1680
SacI	GAGCTC	2 cut(s)	216, 1445
SaqAI	TTAA	9 cut(s)	356, 425, 741, 891, 1737, 2346, 2361, 3069, 3089
SatI	GCNGC	5 cut(s)	24, 232, 855, 1038, 2740
Sau3AI	GATC	7 cut(s)	201, 745, 1368, 1508, 2095, 2172, 2244
Sau96I	GGNCC	4 cut(s)	256, 329, 1744, 2809
ScaI	AGTACT	3 cut(s)	2023, 2295, 2483
SchI	GAGTC	5 cut(s)	682, 839, 1061, 1932, 2526
ScrFI	CCNGG	5 cut(s)	560, 1013, 1583, 1943, 2081
SduI	GDGCHC	6 cut(s)	216, 343, 1096, 1445, 1523, 2437
SexAI	ACCWGGT	1 cut(s)	1011
SfaNI	GCATC	6 cut(s)	645, 855, 1173, 1773, 2872, 3066
SfcI	CTRYAG	4 cut(s)	207, 849, 1038, 2222
SfuI	TTCGAA	2 cut(s)	884, 1647
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	4 cut(s)	250, 642, 1304, 1680
SmlI	CTYRAG	2 cut(s)	472, 2813
SmoI	CTYRAG	2 cut(s)	472, 2813
SpeI	ACTAGT	1 cut(s)	2686
SseBI	AGGCCT	2 cut(s)	796, 1348
SsiI	CCGC	6 cut(s)	804, 1019, 1986, 2195, 2431, 2626
SspI	AATATT	1 cut(s)	2757
SspMI	CTAG	7 cut(s)	834, 963, 1266, 1337, 1562, 2687, 2709
SstI	GAGCTC	2 cut(s)	216, 1445
StuI	AGGCCT	2 cut(s)	796, 1348
StyD4I	CCNGG	5 cut(s)	558, 1011, 1581, 1941, 2079
StyI	CCWWGG	3 cut(s)	393, 2056, 3048
TaaI	ACNGT	8 cut(s)	644, 909, 1543, 1981, 2026, 2607, 2746, 2782
TaiI	ACGT	1 cut(s)	2879
TaqI	TCGA	7 cut(s)	200, 713, 884, 1647, 1694, 2499, 2520
TatI	WGTACW	4 cut(s)	1407, 2021, 2293, 2481
TfiI	GAWTC	8 cut(s)	786, 800, 959, 1810, 2139, 2201, 2597, 2993
Tru1I	TTAA	9 cut(s)	356, 425, 741, 891, 1737, 2346, 2361, 3069, 3089
Tru9I	TTAA	9 cut(s)	356, 425, 741, 891, 1737, 2346, 2361, 3069, 3089
TscAI	CASTG	7 cut(s)	94, 1047, 1687, 2068, 2175, 2749, 2809
TseFI	GTSAC	4 cut(s)	573, 1661, 1981, 2776
TseI	GCWGC	5 cut(s)	23, 231, 854, 1037, 2739
Tsp45I	GTSAC	4 cut(s)	573, 1661, 1981, 2776
TspGWI	ACGGA	3 cut(s)	536, 1680, 2253
TspRI	CASTG	7 cut(s)	94, 1047, 1687, 2068, 2175, 2749, 2809
VneI	GTGCAC	1 cut(s)	1092
VpaK11BI	GGWCC	1 cut(s)	256
VspI	ATTAAT	2 cut(s)	356, 741
XagI	CCTNNNNNAGG	1 cut(s)	2816
XapI	RAATTY	8 cut(s)	380, 886, 1649, 1915, 2147, 2675, 2704, 2941
XbaI	TCTAGA	2 cut(s)	962, 1561
XceI	RCATGY	4 cut(s)	545, 2107, 2793, 3126
XmiI	GTMKAC	3 cut(s)	599, 1248, 2221
XmnI	GAANNNNTTC	1 cut(s)	2645
XspI	CTAG	7 cut(s)	834, 963, 1266, 1337, 1562, 2687, 2709
ZrmI	AGTACT	3 cut(s)	2023, 2295, 2483
Zsp2I	ATGCAT	2 cut(s)	1188, 2791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.