Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000566.1

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

223451 .. 224304

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000566.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgaccaccctctctcctccttctccgagtttcaatcctctaaaactcgctcccaaatccctcattccacccaaaccggcctccacctccgaacccgacccgtccgttacagaaaccccaaccccaggtccaaacccgacacaatcctccaccaccctcctgcacctcgctttcaaccaagaccacacctgcttctcctccgccaccgactccggcttccgcgtctacacctgcgaccccttccgccatttccacagcgacccctccggtctacgcggcgacattggattcgtcccttccactgccactacttcgccgtcttcggcggcggacccgacccgttctgcccgcccaacaagggactgtgttccgcccgacgccaagcctctaatcgacgacttctccctcaccctcaacgtcggggaccgatgcctcctcgttggatccaacggcgccgacaaaaccatgatcctcaggattctcggaggcaagcacatggtcgaccccagcatggtccgggttctgggtcgctcggctttccacgacaccgctctcaccggcttcggcgacctgtcgtacctaggcggagagtggcggcgtgacgtggcgtttgctggtttcgacgttccgatacagatggatgtttgggctgataaattgatcaaaggagagctgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

226

Amino Acids

24.17

Weight (kDa)

5.82

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	197, 239
Acc36I	ACCTGC	2 cut(s)	197, 239
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	1 cut(s)	551
AccI	GTMKAC	3 cut(s)	225, 271, 501
AccII	CGCG	2 cut(s)	222, 276
AclWI	GGATC	3 cut(s)	438, 451, 463
AcyI	GRCGYC	2 cut(s)	378, 453
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	4 cut(s)	125, 358, 511, 523
AgsI	TTSAA	2 cut(s)	34, 175
AjiI	CACGTC	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	673, 678
AluI	AGCT	2 cut(s)	673, 678
AlwI	GGATC	3 cut(s)	438, 451, 463
AoxI	GGCC	1 cut(s)	78
ArsI	GACNNNNNNTTYG	4 cut(s)	272, 304, 593, 625
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	4 cut(s)	128, 331, 424, 514
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	400, 547
AvaII	GGWCC	4 cut(s)	128, 331, 424, 514
AvrII	CCTAGG	1 cut(s)	580
AxyI	CCTNAGG	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	312
BccI	CCATC	1 cut(s)	631
BceAI	ACGGC	2 cut(s)	301, 466
BciT130I	CCWGG	1 cut(s)	126
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	518
BfaI	CTAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	456
BfuAI	ACCTGC	2 cut(s)	197, 239
BisI	GCNGC	3 cut(s)	277, 327, 596
BlnI	CCTAGG	1 cut(s)	580
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	3 cut(s)	278, 328, 597
Bme1390I	CCNGG	2 cut(s)	126, 518
Bme18I	GGWCC	4 cut(s)	128, 331, 424, 514
BmgBI	CACGTC	1 cut(s)	604
BmgT120I	GGNCC	4 cut(s)	128, 331, 424, 514
BmiI	GGNNCC	4 cut(s)	333, 425, 445, 454
BmrFI	CCNGG	2 cut(s)	126, 518
BmsI	GCATC	1 cut(s)	419
BpiI	GAAGAC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	378, 453
BsaJI	CCNNGG	2 cut(s)	124, 580
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 386, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 358, 511, 523
Bse118I	RCCGGY	2 cut(s)	76, 557
Bse21I	CCTNAGG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	124, 580
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	4 cut(s)	125, 358, 511, 523
BseMII	CTCAG	2 cut(s)	487, 665
BseRI	GAGGAG	3 cut(s)	6, 187, 425
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	2 cut(s)	222, 276
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	5 cut(s)	77, 213, 267, 517, 558
BslFI	GGGAC	3 cut(s)	278, 374, 437
BslI	CCNNNNNNNGG	4 cut(s)	125, 358, 511, 523
BsmFI	GGGAC	3 cut(s)	278, 374, 437
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	443, 468, 660
Bsp1720I	GCTNAGC	1 cut(s)	674
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	486, 666
BspFNI	CGCG	2 cut(s)	222, 276
BspLI	GGNNCC	4 cut(s)	333, 425, 445, 454
BspMI	ACCTGC	2 cut(s)	197, 239
BspPI	GGATC	3 cut(s)	438, 451, 463
BspT107I	GGYRCC	1 cut(s)	452
BsrBI	CCGCTC	1 cut(s)	551
BsrFI	RCCGGY	2 cut(s)	76, 557
BssAI	RCCGGY	2 cut(s)	76, 557
BssECI	CCNNGG	2 cut(s)	124, 580
BssMI	GATC	3 cut(s)	443, 468, 660
BssNI	GRCGYC	2 cut(s)	378, 453
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	365
BstACI	GRCGYC	2 cut(s)	378, 453
BstC8I	GCNNGC	2 cut(s)	349, 491
BstDEI	CTNAG	2 cut(s)	473, 674
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	2 cut(s)	222, 276
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	446, 471, 663
BstMBI	GATC	3 cut(s)	443, 468, 660
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	124, 516
BstUI	CGCG	2 cut(s)	222, 276
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
Bsu36I	CCTNAGG	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	80
BtrI	CACGTC	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	2 cut(s)	197, 239
Cac8I	GCNNGC	2 cut(s)	349, 491
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	2 cut(s)	76, 557
Cfr13I	GGNCC	4 cut(s)	128, 331, 424, 514
CseI	GACGC	2 cut(s)	211, 386
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	3 cut(s)	466, 496, 511
CviJI	RGCY	8 cut(s)	80, 216, 385, 536, 561, 650, 673, 678
CviKI_1	RGCY	8 cut(s)	80, 216, 385, 536, 561, 650, 673, 678
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	2 cut(s)	473, 674
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	3 cut(s)	445, 470, 662
DpnII	GATC	3 cut(s)	443, 468, 660
EciI	GGCGGA	5 cut(s)	190, 233, 344, 360, 600
Eco130I	CCWWGG	1 cut(s)	580
Eco47I	GGWCC	4 cut(s)	128, 331, 424, 514
Eco81I	CCTNAGG	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	580
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	3 cut(s)	469, 499, 514
FaiI	YATR	3 cut(s)	467, 497, 512
FaqI	GGGAC	3 cut(s)	278, 374, 437
FatI	CATG	3 cut(s)	465, 495, 510
FauI	CCCGC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	660
FblI	GTMKAC	3 cut(s)	225, 271, 501
Fnu4HI	GCNGC	3 cut(s)	277, 327, 596
FokI	GGATG	1 cut(s)	653
Fsp4HI	GCNGC	3 cut(s)	277, 327, 596
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	3 cut(s)	277, 327, 596
GsaI	CCCAGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	5 cut(s)	77, 213, 267, 517, 558
HgaI	GACGC	2 cut(s)	211, 386
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	2 cut(s)	378, 453
Hin1II	CATG	3 cut(s)	469, 499, 514
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	3 cut(s)	209, 288, 478
HpaII	CCGG	5 cut(s)	77, 213, 267, 517, 558
HphI	GGTGA	2 cut(s)	400, 547
Hpy166II	GTNNAC	3 cut(s)	226, 272, 502
Hpy188I	TCNGA	4 cut(s)	27, 91, 485, 630
Hpy188III	TCNNGA	1 cut(s)	475
Hpy8I	GTNNAC	3 cut(s)	226, 272, 502
Hpy99I	CGWCG	4 cut(s)	380, 398, 422, 626
HpyAV	CCTTC	3 cut(s)	30, 250, 306
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	3 cut(s)	417, 603, 624
HpyCH4V	TGCA	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	473, 674
HpySE526I	ACGT	3 cut(s)	417, 603, 624
Hsp92I	GRCGYC	2 cut(s)	378, 453
Hsp92II	CATG	3 cut(s)	469, 499, 514
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	443, 468, 660
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	3 cut(s)	417, 603, 624
MaeIII	GTNAC	2 cut(s)	106, 599
MalI	GATC	3 cut(s)	445, 470, 662
MbiI	CCGCTC	1 cut(s)	551
MboI	GATC	3 cut(s)	443, 468, 660
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	1 cut(s)	656
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	421, 471
MspI	CCGG	5 cut(s)	77, 213, 267, 517, 558
MspR9I	CCNGG	2 cut(s)	126, 518
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	222, 276
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	3 cut(s)	443, 468, 660
NlaIII	CATG	3 cut(s)	469, 499, 514
NlaIV	GGNNCC	4 cut(s)	333, 425, 445, 454
NmeAIII	GCCGAG	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	599
PaqCI	CACCTGC	2 cut(s)	197, 239
PfeI	GAWTC	2 cut(s)	288, 478
PkrI	GCNGC	3 cut(s)	278, 328, 597
PleI	GAGTC	1 cut(s)	203
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	4 cut(s)	333, 425, 445, 454
PspPI	GGNCC	4 cut(s)	128, 331, 424, 514
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SalI	GTCGAC	1 cut(s)	500
SatI	GCNGC	3 cut(s)	277, 327, 596
Sau3AI	GATC	3 cut(s)	443, 468, 660
Sau96I	GGNCC	4 cut(s)	128, 331, 424, 514
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	126, 518
SfaNI	GCATC	1 cut(s)	419
SfoI	GGCGCC	1 cut(s)	454
SinI	GGWCC	4 cut(s)	128, 331, 424, 514
Sse9I	AATT	1 cut(s)	656
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	2 cut(s)	124, 516
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	3 cut(s)	420, 606, 627
TaqI	TCGA	3 cut(s)	393, 501, 621
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	1 cut(s)	656
TauI	GCSGC	3 cut(s)	279, 329, 598
TfiI	GAWTC	2 cut(s)	288, 478
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	599
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	4 cut(s)	128, 331, 424, 514
XmaJI	CCTAGG	1 cut(s)	580
XmiI	GTMKAC	3 cut(s)	225, 271, 501
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.