MD04G1190800.v1.1

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001882
Physical Location & Seq
Reverse (-)
28063822 .. 28066922
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1190800.v1.1.491

Sequence Viewer

Length: 780 bp
ATGTTTCAAGAGACCTTCCATGTGCTGTGTCCCAGGCTCAGAGACAACAAAGAACTTTGTCCGTGTCAGCTTGAAGGAGTTCGATTCCGAAACAGCCCGATACCGGCGACAGCTGCTGAGAAATGGCGTGCATCGAGTGCCACAAGCTCGCAACCCTCAAGCGGCTTAAAATTCAACTACCCAGGAATCAATGGCCACCCGCCGCCTGGCTCCAAGCCGCTGATCGAGGACTTCAGTCTCACACTCAACGCCGGCGACCGATGCCTCCTCGTGGGATCCAACGGCGCGGGGAAAACCACGATCTTGAAGATCCTGGGCGGCAAGCACATGGTCGAGCCCCACATGGTTCGCGTGCTCGGAAGGTCGGCGTTTCACGACACCACCTTGACCGGCTCCGGTGACCTCTCGTATCTCGGCGGAGAGTGGCGGCGAGATGTAGCGTTCGCTGGGTTTGATGTCCCGATTCAAATGGACGTTTCGGCAGATAAGTTTATCAATGGGGTGGCGGGGATCGATCCAGAAAGGAGATCAGAGCTGATAAAGGTTTTGAATATTGATCTTTCATGGCGGTTGCACAAGGTGTCCGATGGTCAGAGAAGACGAGTGCAAATCTGTATGGGTCTGCTCAAGCCATACAAGGTTCTTCTGCTAGACGTGATAACGGTGGACCTCGATGTCCTAGCAAGAGCTGGCCTTCTCAAGTTCCTGAAGAAGGAATGCGAAGAACGAGGCGCCACGATCATTTACGCCACGCATATATTTGACGGGTTGGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

260

Amino Acids

28.58

Weight (kDa)

8.51

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 76 - 218 1.1e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 731
AccII CGCG 2 cut(s) 287, 351
AclWI GGATC 5 cut(s) 270, 283, 304, 509, 518
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 2 cut(s) 217, 728
AcyI GRCGYC 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 580
AfiI CCNNNNNNNGG 5 cut(s) 103, 161, 206, 271, 712
AgsI TTSAA 6 cut(s) 8, 74, 175, 307, 467, 550
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 4 cut(s) 32, 181, 205, 312
AluBI AGCT 5 cut(s) 70, 113, 147, 535, 689
AluI AGCT 5 cut(s) 70, 113, 147, 535, 689
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 5, 36, 242
AlwI GGATC 5 cut(s) 270, 283, 304, 509, 518
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 193, 691
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 2 cut(s) 287, 734
AspS9I GGNCC 1 cut(s) 667
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 667
BalI TGGCCA 1 cut(s) 195
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 1 cut(s) 339
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 604
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 581
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 4 cut(s) 34, 183, 207, 314
BcoDI GTCTC 3 cut(s) 5, 36, 242
BfaI CTAG 2 cut(s) 650, 680
BfoI RGCGCY 1 cut(s) 735
BisI GCNGC 6 cut(s) 114, 163, 203, 218, 319, 428
BlsI GCNGC 6 cut(s) 115, 164, 204, 219, 320, 429
Bme1390I CCNGG 4 cut(s) 34, 183, 207, 314
Bme18I GGWCC 1 cut(s) 667
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 667
BmiI GGNNCC 4 cut(s) 211, 277, 394, 733
BmrFI CCNGG 4 cut(s) 34, 183, 207, 314
BmsI GCATC 2 cut(s) 140, 251
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 604
BpuEI CTTGAG 3 cut(s) 142, 611, 683
Bsa29I ATCGAT 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 32, 181, 313
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 161, 206, 271, 712
Bse118I RCCGGY 3 cut(s) 103, 251, 389
BseBI CCWGG 4 cut(s) 34, 183, 207, 314
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 3 cut(s) 32, 181, 313
BseLI CCNNNNNNNGG 5 cut(s) 103, 161, 206, 271, 712
BseMII CTCAG 2 cut(s) 52, 108
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 446
Bsh1236I CGCG 2 cut(s) 287, 351
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 195, 693
BshNI GGYRCC 1 cut(s) 731
BshVI ATCGAT 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 4 cut(s) 104, 252, 390, 396
BslFI GGGAC 2 cut(s) 15, 443
BslI CCNNNNNNNGG 5 cut(s) 103, 161, 206, 271, 712
BsmAI GTCTC 3 cut(s) 5, 36, 242
BsmFI GGGAC 2 cut(s) 15, 443
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 195, 693
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 339, 357
Bsp143I GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
BspANI GGCC 2 cut(s) 195, 693
BspCNI CTCAG 2 cut(s) 51, 109
BspDI ATCGAT 1 cut(s) 513
BspFNI CGCG 2 cut(s) 287, 351
BspLI GGNNCC 4 cut(s) 211, 277, 394, 733
BspPI GGATC 5 cut(s) 270, 283, 304, 509, 518
BspT107I GGYRCC 1 cut(s) 731
BspTNI GGTCTC 1 cut(s) 5
BsrFI RCCGGY 3 cut(s) 103, 251, 389
BssAI RCCGGY 3 cut(s) 103, 251, 389
BssECI CCNNGG 3 cut(s) 32, 181, 313
BssMI GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 4 cut(s) 34, 183, 207, 314
Bst4CI ACNGT 1 cut(s) 664
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 6 cut(s) 129, 149, 253, 323, 353, 691
BstDEI CTNAG 2 cut(s) 38, 117
BstEII GGTNACC 1 cut(s) 398
BstENI CCTNNNNNAGG 1 cut(s) 710
BstFNI CGCG 2 cut(s) 287, 351
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 2 cut(s) 287, 734
BstKTI GATC 9 cut(s) 225, 278, 303, 312, 513, 517, 530, 559, 741
BstMAI GTCTC 3 cut(s) 5, 36, 242
BstMBI GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 113, 137, 261
BstNI CCWGG 4 cut(s) 34, 183, 207, 314
BstPAI GACNNNNGTC 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 32, 181, 205, 312
BstUI CGCG 2 cut(s) 287, 351
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 604
BstX2I RGATCY 2 cut(s) 275, 309
BstYI RGATCY 2 cut(s) 275, 309
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 2 cut(s) 195, 693
BsuTUI ATCGAT 1 cut(s) 513
BtrI CACGTC 1 cut(s) 655
Cac8I GCNNGC 6 cut(s) 129, 149, 253, 323, 353, 691
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 2 cut(s) 287, 734
Cfr10I RCCGGY 3 cut(s) 103, 251, 389
Cfr13I GGNCC 1 cut(s) 667
ClaI ATCGAT 1 cut(s) 513
CviAII CATG 4 cut(s) 20, 328, 343, 564
DdeI CTNAG 2 cut(s) 38, 117
DinI GGCGCC 1 cut(s) 733
DpnI GATC 9 cut(s) 224, 277, 302, 311, 512, 516, 529, 558, 740
DpnII GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
DraIII CACNNNGTG 1 cut(s) 580
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 193
EciI GGCGGA 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 217, 728
Eco91I GGTNACC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 398
EcoRII CCWGG 4 cut(s) 32, 181, 205, 312
EcoT38I GRGCYC 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 733
EheI GGCGCC 1 cut(s) 733
FaeI CATG 4 cut(s) 23, 331, 346, 567
FaiI YATR 8 cut(s) 21, 329, 344, 565, 617, 634, 756, 758
FaqI GGGAC 2 cut(s) 15, 443
FatI CATG 4 cut(s) 19, 327, 342, 563
FauI CCCGC 3 cut(s) 207, 280, 499
Fnu4HI GCNGC 6 cut(s) 114, 163, 203, 218, 319, 428
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 6 cut(s) 114, 163, 203, 218, 319, 428
FspBI CTAG 2 cut(s) 650, 680
GlaI GCGC 2 cut(s) 286, 733
GluI GCNGC 6 cut(s) 114, 163, 203, 218, 319, 428
GsaI CCCAGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 2 cut(s) 195, 693
HapII CCGG 4 cut(s) 104, 252, 390, 396
HhaI GCGC 2 cut(s) 287, 734
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 4 cut(s) 23, 331, 346, 567
Hin6I GCGC 2 cut(s) 285, 732
HinP1I GCGC 2 cut(s) 285, 732
HinfI GANTC 3 cut(s) 84, 186, 463
HpaII CCGG 4 cut(s) 104, 252, 390, 396
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 6 cut(s) 41, 89, 359, 532, 586, 594
Hpy188III TCNNGA 6 cut(s) 8, 304, 374, 460, 518, 706
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 5 cut(s) 25, 68, 354, 704, 706
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 474, 654
HpyCH4V TGCA 3 cut(s) 131, 574, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 137, 261
HpyF3I CTNAG 2 cut(s) 38, 117
HpySE526I ACGT 2 cut(s) 474, 654
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 4 cut(s) 23, 331, 346, 567
HspAI GCGC 2 cut(s) 285, 732
KasI GGCGCC 1 cut(s) 731
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
LmnI GCTCC 2 cut(s) 215, 398
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 140, 251
MaeI CTAG 2 cut(s) 650, 680
MaeII ACGT 2 cut(s) 474, 654
MaeIII GTNAC 1 cut(s) 398
MalI GATC 9 cut(s) 224, 277, 302, 311, 512, 516, 529, 558, 740
MboI GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
MboII GAAGA 5 cut(s) 319, 609, 635, 721, 734
MflI RGATCY 2 cut(s) 275, 309
MhlI GDGCHC 2 cut(s) 339, 357
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 195
Mly113I GGCGCC 1 cut(s) 732
MmeI TCCRAC 2 cut(s) 303, 750
MnlI CCTC 7 cut(s) 166, 220, 275, 278, 413, 680, 722
Mox20I TGGCCA 1 cut(s) 195
MreI CGCCGGCG 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 78
MscI TGGCCA 1 cut(s) 195
MseI TTAA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 113, 220
MspI CCGG 4 cut(s) 104, 252, 390, 396
MspR9I CCNGG 4 cut(s) 34, 183, 207, 314
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 4 cut(s) 34, 183, 207, 314
MvnI CGCG 2 cut(s) 287, 351
MwoI GCNNNNNNNGC 3 cut(s) 113, 137, 261
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 1 cut(s) 732
NdeII GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 4 cut(s) 23, 331, 346, 567
NlaIV GGNNCC 4 cut(s) 211, 277, 394, 733
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 398
PctI GAATGC 1 cut(s) 722
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 84, 186, 463
PkrI GCNGC 6 cut(s) 115, 164, 204, 219, 320, 429
PluTI GGCGCC 1 cut(s) 735
PshAI GACNNNNGTC 1 cut(s) 234
Psp6I CCWGG 4 cut(s) 32, 181, 205, 312
PspEI GGTNACC 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 4 cut(s) 32, 181, 205, 312
PspN4I GGNNCC 4 cut(s) 211, 277, 394, 733
PspPI GGNCC 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 275, 309
PvuII CAGCTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 6 cut(s) 114, 163, 203, 218, 319, 428
Sau3AI GATC 9 cut(s) 222, 275, 300, 309, 510, 514, 527, 556, 738
Sau96I GGNCC 1 cut(s) 667
ScrFI CCNGG 4 cut(s) 34, 183, 207, 314
SduI GDGCHC 2 cut(s) 339, 357
SfaNI GCATC 2 cut(s) 140, 251
SfoI GGCGCC 1 cut(s) 733
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 1 cut(s) 667
SmlI CTYRAG 3 cut(s) 157, 626, 698
SmoI CTYRAG 3 cut(s) 157, 626, 698
Sse9I AATT 1 cut(s) 170
SspDI GGCGCC 1 cut(s) 731
SspI AATATT 1 cut(s) 553
SspMI CTAG 2 cut(s) 650, 680
StyD4I CCNGG 4 cut(s) 32, 181, 205, 312
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 477, 657
TaqI TCGA 6 cut(s) 82, 134, 225, 333, 513, 672
TaqII GACCGA 1 cut(s) 273
TasI AATT 1 cut(s) 170
TauI GCSGC 5 cut(s) 165, 205, 220, 321, 430
TfiI GAWTC 3 cut(s) 84, 186, 463
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 667
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 2 cut(s) 650, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.