Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Reverse (-)

28320403 .. 28322092

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1203100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTGTGAATCCAAACTCCGAGCCGTCGATCGAGATCAACGGCCTAAAATTCACCTACCCAGGAATCAACGGCCACCCGCCGCCGGGCTCCAAGCCGCTGATCGAGGACTTCAATCTCACCCTCAATGCCGGCGACCGATGCCTCCTCGTCGGATCCAACGGCGCGGGGAAAACCACGATCTTGAAGATCCTGGGCGGCAAGCACATGGTCGAGCCCCACATGGTTCGCGTGCTCGGAAGGTCGGCGTTTCACGACACCGCCTTGACCGGCTCCGGCGACCTCTCGTATCTCGGCGGAGAGTGGCGGCGAGATGTCGCATTCGCCGGGTTTGATGTCCCGATTCAAATGGACGTTTCGGCCGATAAGTTGATCAATGGGGTTGCGGGGATCGACCCACAAAGGAGAGCAGAGCTGATAAAGGTTTTGGATATTGATCTTTCATGGCGGTTGCACAAGGTGTCCGATGGTCAGAGAAGACGAGTGCAAATCTGTATGGGTCTGCTCAAGCCATACAAGGTTCTTCTGCTAGACGAGATAACGGTGGACCTCGATGTGCTAGCAAGAGCTGACCTTCTCAAGTTCTTGAGGAAGGAATGCGAAGAGCGAGGCGCCACGATCATTTATGCTACGCATATATTTGACGGGTTGGAAAATTGGCCCTCGCATATCGCTTATGTTGCGAATGGGAAGTTGCAGCTAGCAATGCCAATGGAGAAAGTTAGGGAGATCTCCAAGTTGTCACTAATGAGGACAGTCGAGAGTTGGCTGAGGAAGGAGCGTGAGGAGGAGAGGAAGAGAAGGAAGGAGAGAAAGGCGAAGGGTCTTCCGGAGTTTGAGCAACCAAATGAGGGAAGCGGTGATGTTCGTTCAGTGAACAATGGTTGGGCAGCTGGACGCCTGAATTCCACCATTGCCGGAGAAGAGAACTTTGTCTTCAGCTCAAACAGAGTTCTCAGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

322

Amino Acids

35.83

Weight (kDa)

8.87

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	36 - 181	5e-16	ABC transporter
AAA_21	PF13304	149 - 212	1.2e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	611
AccII	CGCG	2 cut(s)	167, 231
AccIII	TCCGGA	1 cut(s)	829
AclWI	GGATC	4 cut(s)	150, 163, 184, 398
AcoI	YGGCCR	2 cut(s)	73, 360
AcsI	RAATTY	2 cut(s)	50, 904
AcuI	CTGAAG	1 cut(s)	922
AcyI	GRCGYC	2 cut(s)	612, 898
AdeI	CACNNNGTG	1 cut(s)	460
AfiI	CCNNNNNNNGG	3 cut(s)	85, 86, 851
AgsI	TTSAA	3 cut(s)	115, 187, 347
AjnI	CCWGG	2 cut(s)	61, 192
AluBI	AGCT	5 cut(s)	415, 569, 700, 893, 942
AluI	AGCT	5 cut(s)	415, 569, 700, 893, 942
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	150, 163, 184, 398
Aor13HI	TCCGGA	1 cut(s)	829
AoxI	GGCC	4 cut(s)	43, 73, 360, 659
ApeKI	GCWGC	2 cut(s)	697, 890
ApoI	RAATTY	2 cut(s)	50, 904
AspLEI	GCGC	2 cut(s)	167, 614
AspS9I	GGNCC	2 cut(s)	547, 660
AsuC2I	CCSGG	2 cut(s)	87, 328
AsuHPI	GGTGA	3 cut(s)	46, 112, 872
AsuNHI	GCTAGC	2 cut(s)	559, 700
AvaII	GGWCC	1 cut(s)	547
BamHI	GGATCC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	2 cut(s)	92, 219
BbsI	GAAGAC	3 cut(s)	484, 818, 928
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	709, 902
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	4 cut(s)	10, 58, 88, 178
BciT130I	CCWGG	2 cut(s)	63, 194
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	87, 328
BfaI	CTAG	3 cut(s)	530, 560, 701
BfoI	RGCGCY	1 cut(s)	615
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	6 cut(s)	83, 98, 199, 308, 698, 891
BlsI	GCNGC	6 cut(s)	84, 99, 200, 309, 699, 892
Bme1390I	CCNGG	4 cut(s)	63, 87, 194, 328
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	2 cut(s)	547, 660
BmiI	GGNNCC	4 cut(s)	91, 157, 274, 613
BmrFI	CCNGG	4 cut(s)	63, 87, 194, 328
BmsI	GCATC	1 cut(s)	131
BmtI	GCTAGC	2 cut(s)	563, 704
BpiI	GAAGAC	3 cut(s)	484, 818, 928
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	3 cut(s)	491, 563, 607
BpuMI	CCSGG	2 cut(s)	87, 328
BsaBI	GATNNNNATC	2 cut(s)	35, 435
BsaHI	GRCGYC	2 cut(s)	612, 898
BsaJI	CCNNGG	2 cut(s)	61, 193
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 86, 851
Bse118I	RCCGGY	2 cut(s)	131, 269
Bse3DI	GCAATG	2 cut(s)	711, 912
Bse8I	GATNNNNATC	2 cut(s)	35, 435
BseAI	TCCGGA	1 cut(s)	829
BseBI	CCWGG	2 cut(s)	63, 194
BseDI	CCNNGG	2 cut(s)	61, 193
BseJI	GATNNNNATC	2 cut(s)	35, 435
BseLI	CCNNNNNNNGG	3 cut(s)	85, 86, 851
BseMI	GCAATG	2 cut(s)	711, 912
BseMII	CTCAG	1 cut(s)	761
BseRI	GAGGAG	3 cut(s)	137, 800, 803
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	709, 902
Bsh1236I	CGCG	2 cut(s)	167, 231
Bsh1285I	CGRYCG	3 cut(s)	33, 139, 363
BshFI	GGCC	4 cut(s)	45, 75, 362, 661
BshNI	GGYRCC	1 cut(s)	611
BsiEI	CGRYCG	3 cut(s)	33, 139, 363
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	7 cut(s)	86, 132, 270, 276, 327, 830, 918
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	85, 86, 851
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	2 cut(s)	320, 602
BsnI	GGCC	4 cut(s)	45, 75, 362, 661
Bsp1286I	GDGCHC	3 cut(s)	92, 219, 237
Bsp13I	TCCGGA	1 cut(s)	829
BspANI	GGCC	4 cut(s)	45, 75, 362, 661
BspCNI	CTCAG	1 cut(s)	762
BspEI	TCCGGA	1 cut(s)	829
BspFNI	CGCG	2 cut(s)	167, 231
BspLI	GGNNCC	4 cut(s)	91, 157, 274, 613
BspOI	GCTAGC	2 cut(s)	563, 704
BspPI	GGATC	4 cut(s)	150, 163, 184, 398
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	2 cut(s)	711, 912
BsrFI	RCCGGY	2 cut(s)	131, 269
BssAI	RCCGGY	2 cut(s)	131, 269
BssECI	CCNNGG	2 cut(s)	61, 193
BssNI	GRCGYC	2 cut(s)	612, 898
Bst2UI	CCWGG	2 cut(s)	63, 194
Bst4CI	ACNGT	2 cut(s)	544, 757
Bst6I	CTCTTC	3 cut(s)	597, 791, 918
BstACI	GRCGYC	2 cut(s)	612, 898
BstC8I	GCNNGC	5 cut(s)	133, 203, 233, 561, 702
BstDEI	CTNAG	2 cut(s)	770, 956
BstFNI	CGCG	2 cut(s)	167, 231
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	2 cut(s)	167, 614
BstMCI	CGRYCG	3 cut(s)	33, 139, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 680, 706
BstNI	CCWGG	2 cut(s)	63, 194
BstSCI	CCNGG	4 cut(s)	61, 85, 192, 326
BstUI	CGCG	2 cut(s)	167, 231
BstV1I	GCAGC	2 cut(s)	709, 902
BstV2I	GAAGAC	3 cut(s)	484, 818, 928
BstX2I	RGATCY	3 cut(s)	155, 189, 729
BstYI	RGATCY	3 cut(s)	155, 189, 729
BstZI	CGGCCG	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	45, 75, 362, 661
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	5 cut(s)	133, 203, 233, 561, 702
CfoI	GCGC	2 cut(s)	167, 614
Cfr10I	RCCGGY	2 cut(s)	131, 269
Cfr13I	GGNCC	2 cut(s)	547, 660
CseI	GACGC	1 cut(s)	906
CviAII	CATG	3 cut(s)	208, 223, 444
DdeI	CTNAG	2 cut(s)	770, 956
DinI	GGCGCC	1 cut(s)	613
DraIII	CACNNNGTG	1 cut(s)	460
EaeI	YGGCCR	2 cut(s)	73, 360
EagI	CGGCCG	1 cut(s)	360
Eam1104I	CTCTTC	3 cut(s)	597, 791, 918
EarI	CTCTTC	3 cut(s)	597, 791, 918
EciI	GGCGGA	1 cut(s)	312
EclXI	CGGCCG	1 cut(s)	360
Eco24I	GRGCYC	2 cut(s)	92, 219
Eco47I	GGWCC	1 cut(s)	547
Eco52I	CGGCCG	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	922
EcoRI	GAATTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	61, 192
EcoT38I	GRGCYC	2 cut(s)	92, 219
EgeI	GGCGCC	1 cut(s)	613
EheI	GGCGCC	1 cut(s)	613
FaeI	CATG	3 cut(s)	211, 226, 447
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	207, 222, 443
FauI	CCCGC	3 cut(s)	87, 160, 379
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	6 cut(s)	83, 98, 199, 308, 698, 891
FriOI	GRGCYC	2 cut(s)	92, 219
Fsp4HI	GCNGC	6 cut(s)	83, 98, 199, 308, 698, 891
FspBI	CTAG	3 cut(s)	530, 560, 701
GlaI	GCGC	2 cut(s)	166, 613
GluI	GCNGC	6 cut(s)	83, 98, 199, 308, 698, 891
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	45, 75, 362, 661
HapII	CCGG	7 cut(s)	86, 132, 270, 276, 327, 830, 918
HgaI	GACGC	1 cut(s)	906
HhaI	GCGC	2 cut(s)	167, 614
Hin1I	GRCGYC	2 cut(s)	612, 898
Hin1II	CATG	3 cut(s)	211, 226, 447
Hin6I	GCGC	2 cut(s)	165, 612
HinP1I	GCGC	2 cut(s)	165, 612
HinfI	GANTC	3 cut(s)	10, 66, 343
HpaII	CCGG	7 cut(s)	86, 132, 270, 276, 327, 830, 918
HphI	GGTGA	3 cut(s)	46, 112, 872
Hpy166II	GTNNAC	2 cut(s)	547, 877
Hpy188I	TCNGA	5 cut(s)	22, 155, 239, 466, 474
Hpy188III	TCNNGA	7 cut(s)	34, 184, 254, 340, 586, 760, 830
Hpy8I	GTNNAC	2 cut(s)	547, 877
Hpy99I	CGWCG	2 cut(s)	31, 155
HpyAV	CCTTC	7 cut(s)	234, 584, 586, 769, 795, 799, 814
HpyCH4III	ACNGT	2 cut(s)	544, 757
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	454, 487, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 680, 706
HpyF3I	CTNAG	2 cut(s)	770, 956
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	2 cut(s)	612, 898
Hsp92II	CATG	3 cut(s)	211, 226, 447
HspAI	GCGC	2 cut(s)	165, 612
KasI	GGCGCC	1 cut(s)	611
Kpn2I	TCCGGA	1 cut(s)	829
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	372
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	3 cut(s)	95, 278, 778
Lsp1109I	GCAGC	2 cut(s)	709, 902
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	3 cut(s)	530, 560, 701
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	741
MboII	GAAGA	8 cut(s)	199, 489, 515, 614, 808, 818, 928, 935
MflI	RGATCY	3 cut(s)	155, 189, 729
MhlI	GDGCHC	3 cut(s)	92, 219, 237
MluCI	AATT	3 cut(s)	50, 655, 904
Mly113I	GGCGCC	1 cut(s)	612
MmeI	TCCRAC	3 cut(s)	133, 183, 630
MroI	TCCGGA	1 cut(s)	829
MroNI	GCCGGC	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	100, 893
MspI	CCGG	7 cut(s)	86, 132, 270, 276, 327, 830, 918
MspR9I	CCNGG	4 cut(s)	63, 87, 194, 328
Mva1269I	GAATGC	2 cut(s)	320, 602
MvaI	CCWGG	2 cut(s)	63, 194
MvnI	CGCG	2 cut(s)	167, 231
MwoI	GCNNNNNNNGC	3 cut(s)	141, 680, 706
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	612
NciI	CCSGG	2 cut(s)	87, 328
NgoMIV	GCCGGC	1 cut(s)	131
NheI	GCTAGC	2 cut(s)	559, 700
NlaIII	CATG	3 cut(s)	211, 226, 447
NlaIV	GGNNCC	4 cut(s)	91, 157, 274, 613
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	2 cut(s)	320, 602
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	10, 66, 343
PkrI	GCNGC	6 cut(s)	84, 99, 200, 309, 699, 892
Ple19I	CGATCG	1 cut(s)	33
PluTI	GGCGCC	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	61, 192
PspGI	CCWGG	2 cut(s)	61, 192
PspN4I	GGNNCC	4 cut(s)	91, 157, 274, 613
PspPI	GGNCC	2 cut(s)	547, 660
PsuI	RGATCY	3 cut(s)	155, 189, 729
PvuI	CGATCG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	893
SapI	GCTCTTC	1 cut(s)	597
SatI	GCNGC	6 cut(s)	83, 98, 199, 308, 698, 891
Sau96I	GGNCC	2 cut(s)	547, 660
ScrFI	CCNGG	4 cut(s)	63, 87, 194, 328
SduI	GDGCHC	3 cut(s)	92, 219, 237
SfaNI	GCATC	1 cut(s)	131
SfoI	GGCGCC	1 cut(s)	613
SinI	GGWCC	1 cut(s)	547
SmlI	CTYRAG	3 cut(s)	506, 578, 586
SmoI	CTYRAG	3 cut(s)	506, 578, 586
Sse9I	AATT	3 cut(s)	50, 655, 904
SspDI	GGCGCC	1 cut(s)	611
SspMI	CTAG	3 cut(s)	530, 560, 701
StyD4I	CCNGG	4 cut(s)	61, 85, 192, 326
TaaI	ACNGT	2 cut(s)	544, 757
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	7 cut(s)	29, 33, 105, 213, 393, 552, 759
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	50, 655, 904
TauI	GCSGC	4 cut(s)	85, 100, 201, 310
TfiI	GAWTC	3 cut(s)	10, 66, 343
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	2 cut(s)	697, 890
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	2 cut(s)	50, 904
XspI	CTAG	3 cut(s)	530, 560, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.