Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

88992503 .. 88992952

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35748

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTCGACCCCAGCATGGTCCGGGTTCTGGGTCGCTCGGCTTTCCACGACACCGCTCTCACCGGCTTCGGCGACCTGTCGTACCTAGGCGGAGAGTGGCGGCGTGACGTGGCAGCTGAGCTGATCAAGGTGTTGGATATTGATCTTTCATGGAGGTTGCATATTCATCTCGGTTATGTGCTTCTACTTGATGAGATCACGGTGGACCTTGATGTGCTAGTGAGGGCGGACCTGCTCCAGTTCTTGAGGAAGGAATGTGACGAGCGAGGTGCTATGATCGTTTCTCAAGCCCCAAATTGCAGAGAGAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

5.74

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	4 cut(s)	84, 120, 130, 257
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	46, 58
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	2 cut(s)	146, 151
AluI	AGCT	2 cut(s)	146, 151
ApeKI	GCWGC	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	49, 235, 259
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	3 cut(s)	49, 235, 259
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	2 cut(s)	116, 248
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	2 cut(s)	131, 144
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	2 cut(s)	132, 145
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	3 cut(s)	49, 235, 259
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	49, 235, 259
BmrFI	CCNGG	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	251
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	295, 300
BpuMI	CCSGG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 58
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	268
Bse21I	CCTNAGG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	46, 58
BseMII	CTCAG	2 cut(s)	22, 138
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	52, 93
BslI	CCNNNNNNNGG	2 cut(s)	46, 58
Bsp143I	GATC	5 cut(s)	3, 153, 172, 225, 306
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	84, 120, 130, 257
BspCNI	CTCAG	2 cut(s)	21, 139
BspMI	ACCTGC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	5 cut(s)	3, 153, 172, 225, 306
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	8, 147
BstKTI	GATC	5 cut(s)	6, 156, 175, 228, 309
BstMBI	GATC	5 cut(s)	3, 153, 172, 225, 306
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	49, 235, 259
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	31, 46, 180
CviJI	RGCY	5 cut(s)	71, 96, 146, 151, 320
CviKI_1	RGCY	5 cut(s)	71, 96, 146, 151, 320
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	8, 147
DpnI	GATC	5 cut(s)	5, 155, 174, 227, 308
DpnII	GATC	5 cut(s)	3, 153, 172, 225, 306
EciI	GGCGGA	2 cut(s)	135, 272
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	3 cut(s)	49, 235, 259
Eco81I	CCTNAGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	34, 49, 183
FaiI	YATR	6 cut(s)	32, 47, 181, 192, 207, 305
FatI	CATG	3 cut(s)	30, 45, 179
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	131, 144
Fsp4HI	GCNGC	2 cut(s)	131, 144
FspBI	CTAG	2 cut(s)	116, 248
GluI	GCNGC	2 cut(s)	131, 144
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	251
HapII	CCGG	2 cut(s)	52, 93
Hin1II	CATG	3 cut(s)	34, 49, 183
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	13, 339
HpaII	CCGG	2 cut(s)	52, 93
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	37, 235
Hpy188I	TCNGA	2 cut(s)	20, 344
Hpy188III	TCNNGA	2 cut(s)	10, 274
Hpy8I	GTNNAC	2 cut(s)	37, 235
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	190, 330
HpyF3I	CTNAG	2 cut(s)	8, 147
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	34, 49, 183
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	5 cut(s)	3, 153, 172, 225, 306
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	7 cut(s)	44, 55, 65, 106, 119, 275, 281
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	116, 248
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	134, 287
MalI	GATC	5 cut(s)	5, 155, 174, 227, 308
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	5 cut(s)	3, 153, 172, 225, 306
MluCI	AATT	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	14, 17, 177, 246, 270, 290
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	2 cut(s)	52, 93
MspR9I	CCNGG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	5 cut(s)	3, 153, 172, 225, 306
NlaIII	CATG	3 cut(s)	34, 49, 183
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	134, 287
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	132, 145
PspFI	CCCAGC	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	49, 235, 259
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	2 cut(s)	131, 144
Sau3AI	GATC	5 cut(s)	3, 153, 172, 225, 306
Sau96I	GGNCC	3 cut(s)	49, 235, 259
ScrFI	CCNGG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	49, 235, 259
SmlI	CTYRAG	2 cut(s)	274, 315
SmoI	CTYRAG	2 cut(s)	274, 315
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	4 cut(s)	84, 120, 130, 257
SspMI	CTAG	2 cut(s)	116, 248
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	325
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	134, 287
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	134, 287
TspDTI	ATGAA	2 cut(s)	168, 185
VpaK11BI	GGWCC	3 cut(s)	49, 235, 259
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	116, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.