Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001882

Physical Location & Seq

Genomic Coordinates Forward (+)

19785093 .. 19785449

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTCTTCCACCGCCACTACTTCGCCGTCTTCGGCGCGGACCCCAACCCGTTCGCGCGCCCCAACAAGGTCATGATCTACGACGATCGCCGGTCCCGCCGCGTCGGCGAGCTCTTGTTCGGTCCGAGGTCGAGTCGGTCGAGCTCCCGCCGCGACCGCATCGTCGTCGTTGTTCTCCACAAGATCTTCGTCTACGATTTCAACGCTTTGAAGCCGTTGGATTCGATTGTGACCGTGGAAAACCCTAAGGGACGTGTTCGCCCCGACGCCAAGCCTCTAATCGACGACTTCTCCCTCACCCTCAACGTCGACGACCGATGCCTCCTCGTTGGATCCAACGGCACGGCAAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

10.08

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02270 AT5G02270
fragaria_vesca	FvH4_6g08040
malus_domestica	MD03G1234700.v1.1 MD04G1190800.v1.1 MD12G1203100.v1.1
prunus_persica	Prupe.6G308800_v2.0.a1
pyrus_communis	pycom12g18950
rosa_chinensis	RchiOBHm_Chr2g0097941 RchiOBHm_Chr3g0457711 RchiOBHm_Chr5g0083331 RchiOBHm_Chr7g0234131
rosa_laevigata	RLG00000019926 RLG00000025192
rosa_multiflora	Rmu_sc0000566.1_g000046 Rmu_sc0001301.1_g000082 Rmu_sc0002068.1_g000007 Rmu_sc0004502.1_g000016 Rmu_sc0005743.1_g000009 Rmu_sc0007131.1_g000011 Rmu_sc0007395.1_g000002 Rmu_sc0028418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370790 Rroxscaffold_6G00421550 Rroxscaffold_7G00180370
rosa_rugosa	Rorug03G0022700 Rorug05G0320000 Rorug06G0006300 Rorug06G0405000
rosa_samantha	Rh2AG292200 Rh2DG120300 Rh2DG432800 Rh3AG083500 Rh3BG086000 Rh3CG086300 Rh3DG086900 Rh4BG183300 Rh6BG113400 Rh6CG111600 Rh6DG101300 Rh7CG459900 Rh7DG392600 Rh7DG481700
rosa_wichuraiana	Rw3G007150 Rw5G007850 Rw7G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccI	GTMKAC	2 cut(s)	192, 309
AccII	CGCG	5 cut(s)	38, 56, 58, 102, 153
AciI	CCGC	7 cut(s)	13, 38, 97, 100, 148, 151, 157
AclWI	GGATC	2 cut(s)	327, 340
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	202, 211
AjiI	CACGTC	1 cut(s)	254
AluBI	AGCT	2 cut(s)	112, 144
AluI	AGCT	2 cut(s)	112, 144
Alw21I	GWGCWC	2 cut(s)	114, 146
AlwI	GGATC	2 cut(s)	327, 340
AspLEI	GCGC	3 cut(s)	38, 58, 60
AspS9I	GGNCC	3 cut(s)	40, 93, 122
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	3 cut(s)	40, 93, 122
AxyI	CCTNAGG	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	114, 146
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	114, 146
BceAI	ACGGC	3 cut(s)	11, 199, 355
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BglI	GCCNNNNNGGC	1 cut(s)	105
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	2 cut(s)	100, 151
BlsI	GCNGC	2 cut(s)	101, 152
Bme18I	GGWCC	3 cut(s)	40, 93, 122
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	40, 93, 122
BmiI	GGNNCC	3 cut(s)	42, 95, 334
BmsI	GCATC	2 cut(s)	168, 308
BpiI	GAAGAC	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	125, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	90
Bse21I	CCTNAGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	125, 234
BseLI	CCNNNNNNNGG	1 cut(s)	67
BsePI	GCGCGC	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	314
Bsh1236I	CGCG	5 cut(s)	38, 56, 58, 102, 153
Bsh1285I	CGRYCG	4 cut(s)	88, 140, 157, 316
BsiEI	CGRYCG	4 cut(s)	88, 140, 157, 316
BsiHKAI	GWGCWC	2 cut(s)	114, 146
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	79, 264
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	79, 264
Bsp1286I	GDGCHC	2 cut(s)	114, 146
Bsp143I	GATC	4 cut(s)	75, 85, 183, 332
BspACI	CCGC	7 cut(s)	13, 38, 97, 100, 148, 151, 157
BspFNI	CGCG	5 cut(s)	38, 56, 58, 102, 153
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	42, 95, 334
BspPI	GGATC	2 cut(s)	327, 340
BsrFI	RCCGGY	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	125, 234
BssHII	GCGCGC	1 cut(s)	56
BssMI	GATC	4 cut(s)	75, 85, 183, 332
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	58, 110
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	234
BstFNI	CGCG	5 cut(s)	38, 56, 58, 102, 153
BstHHI	GCGC	3 cut(s)	38, 58, 60
BstKTI	GATC	4 cut(s)	78, 88, 186, 335
BstMBI	GATC	4 cut(s)	75, 85, 183, 332
BstMCI	CGRYCG	4 cut(s)	88, 140, 157, 316
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 105, 150, 156
BstUI	CGCG	5 cut(s)	38, 56, 58, 102, 153
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	183, 332
BstYI	RGATCY	2 cut(s)	183, 332
Bsu36I	CCTNAGG	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	58, 110
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	3 cut(s)	38, 58, 60
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	40, 93, 122
CpoI	CGGWCCG	1 cut(s)	122
CseI	GACGC	2 cut(s)	91, 275
CspI	CGGWCCG	1 cut(s)	122
CviAII	CATG	2 cut(s)	73, 354
CviJI	RGCY	4 cut(s)	112, 144, 214, 274
CviKI_1	RGCY	4 cut(s)	112, 144, 214, 274
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	4 cut(s)	77, 87, 185, 334
DpnII	GATC	4 cut(s)	75, 85, 183, 332
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Ecl136II	GAGCTC	2 cut(s)	112, 144
Eco24I	GRGCYC	2 cut(s)	114, 146
Eco47I	GGWCC	3 cut(s)	40, 93, 122
Eco53kI	GAGCTC	2 cut(s)	112, 144
Eco81I	CCTNAGG	1 cut(s)	246
EcoICRI	GAGCTC	2 cut(s)	112, 144
EcoT38I	GRGCYC	2 cut(s)	114, 146
FaeI	CATG	2 cut(s)	76, 357
FaiI	YATR	2 cut(s)	74, 355
FaqI	GGGAC	2 cut(s)	79, 264
FatI	CATG	2 cut(s)	72, 353
FauI	CCCGC	2 cut(s)	104, 155
FblI	GTMKAC	2 cut(s)	192, 309
Fnu4HI	GCNGC	2 cut(s)	100, 151
FriOI	GRGCYC	2 cut(s)	114, 146
Fsp4HI	GCNGC	2 cut(s)	100, 151
GlaI	GCGC	3 cut(s)	37, 57, 59
GluI	GCNGC	2 cut(s)	100, 151
HapII	CCGG	1 cut(s)	91
HgaI	GACGC	2 cut(s)	91, 275
HhaI	GCGC	3 cut(s)	38, 58, 60
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	76, 357
Hin6I	GCGC	3 cut(s)	36, 56, 58
HinP1I	GCGC	3 cut(s)	36, 56, 58
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	133, 221
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	193, 310
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	193, 310
Hpy99I	CGWCG	8 cut(s)	86, 107, 167, 170, 269, 287, 311, 314
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	253, 306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 105, 150, 156
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	253, 306
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	76, 357
HspAI	GCGC	3 cut(s)	36, 56, 58
Kzo9I	GATC	4 cut(s)	75, 85, 183, 332
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	1 cut(s)	104
LweI	GCATC	2 cut(s)	168, 308
MaeII	ACGT	2 cut(s)	253, 306
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	77, 87, 185, 334
MboI	GATC	4 cut(s)	75, 85, 183, 332
MboII	GAAGA	2 cut(s)	22, 178
MflI	RGATCY	2 cut(s)	183, 332
MhlI	GDGCHC	2 cut(s)	114, 146
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	198, 310
MnlI	CCTC	6 cut(s)	120, 285, 305, 311, 332, 335
MspI	CCGG	1 cut(s)	91
MvnI	CGCG	5 cut(s)	38, 56, 58, 102, 153
MwoI	GCNNNNNNNGC	4 cut(s)	96, 105, 150, 156
NdeII	GATC	4 cut(s)	75, 85, 183, 332
NlaIII	CATG	2 cut(s)	76, 357
NlaIV	GGNNCC	3 cut(s)	42, 95, 334
NmuCI	GTSAC	1 cut(s)	229
PagI	TCATGA	1 cut(s)	72
PauI	GCGCGC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	101, 152
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	2 cut(s)	114, 146
PspN4I	GGNNCC	3 cut(s)	42, 95, 334
PspPI	GGNCC	3 cut(s)	40, 93, 122
PsuI	RGATCY	2 cut(s)	183, 332
PteI	GCGCGC	1 cut(s)	56
PvuI	CGATCG	1 cut(s)	88
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
SacI	GAGCTC	2 cut(s)	114, 146
SalI	GTCGAC	1 cut(s)	308
SatI	GCNGC	2 cut(s)	100, 151
Sau3AI	GATC	4 cut(s)	75, 85, 183, 332
Sau96I	GGNCC	3 cut(s)	40, 93, 122
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	2 cut(s)	114, 146
SetI	ASST	6 cut(s)	72, 114, 131, 146, 256, 309
SfaNI	GCATC	2 cut(s)	168, 308
SgrDI	CGTCGACG	1 cut(s)	308
SinI	GGWCC	3 cut(s)	40, 93, 122
SsiI	CCGC	7 cut(s)	13, 38, 97, 100, 148, 151, 157
SstI	GAGCTC	2 cut(s)	114, 146
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	256, 309
TaqI	TCGA	5 cut(s)	131, 140, 224, 282, 309
TaqII	GACCGA	3 cut(s)	110, 126, 330
TauI	GCSGC	2 cut(s)	102, 153
TfiI	GAWTC	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	40, 93, 122
XmiI	GTMKAC	2 cut(s)	192, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.